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Genes within 1Mb (chr1:62889202:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -704209 sc-eQTL 2.92e-01 -0.0828 0.0784 0.37 B L1
ENSG00000088035 ALG6 -478373 sc-eQTL 3.90e-01 -0.0701 0.0813 0.37 B L1
ENSG00000116641 DOCK7 200816 sc-eQTL 4.47e-01 0.0619 0.0814 0.37 B L1
ENSG00000125703 ATG4C 105070 sc-eQTL 2.28e-01 -0.0683 0.0564 0.37 B L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 1.35e-01 0.135 0.0896 0.37 B L1
ENSG00000162607 USP1 452905 sc-eQTL 6.93e-01 0.0309 0.0782 0.37 B L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.89e-02 0.167 0.0916 0.37 B L1
ENSG00000079739 PGM1 -704209 sc-eQTL 8.07e-01 0.0165 0.0672 0.37 CD4T L1
ENSG00000088035 ALG6 -478373 sc-eQTL 3.20e-01 0.0738 0.074 0.37 CD4T L1
ENSG00000116641 DOCK7 200816 sc-eQTL 9.58e-01 0.00393 0.0751 0.37 CD4T L1
ENSG00000125703 ATG4C 105070 sc-eQTL 6.19e-01 0.0302 0.0606 0.37 CD4T L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.19e-01 0.00881 0.086 0.37 CD4T L1
ENSG00000162607 USP1 452905 sc-eQTL 2.92e-01 -0.0619 0.0587 0.37 CD4T L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 1.49e-01 -0.111 0.0768 0.37 CD4T L1
ENSG00000079739 PGM1 -704209 sc-eQTL 5.57e-01 0.0438 0.0743 0.37 CD8T L1
ENSG00000088035 ALG6 -478373 sc-eQTL 6.20e-01 0.0407 0.082 0.37 CD8T L1
ENSG00000116641 DOCK7 200816 sc-eQTL 4.22e-01 0.0667 0.083 0.37 CD8T L1
ENSG00000125703 ATG4C 105070 sc-eQTL 2.01e-02 -0.183 0.0779 0.37 CD8T L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 8.19e-01 -0.0202 0.0883 0.37 CD8T L1
ENSG00000162607 USP1 452905 sc-eQTL 9.68e-01 -0.00277 0.0688 0.37 CD8T L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.07e-01 -0.0453 0.0879 0.37 CD8T L1
ENSG00000079739 PGM1 -704209 sc-eQTL 8.34e-01 0.0173 0.0827 0.376 DC L1
ENSG00000088035 ALG6 -478373 sc-eQTL 7.25e-01 -0.0301 0.0853 0.376 DC L1
ENSG00000116641 DOCK7 200816 sc-eQTL 9.84e-01 -0.0018 0.0875 0.376 DC L1
ENSG00000125703 ATG4C 105070 sc-eQTL 6.44e-01 0.0317 0.0684 0.376 DC L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.62e-01 0.00458 0.0957 0.376 DC L1
ENSG00000162607 USP1 452905 sc-eQTL 7.71e-01 -0.0244 0.0835 0.376 DC L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 4.53e-01 0.0626 0.0831 0.376 DC L1
ENSG00000079739 PGM1 -704209 sc-eQTL 4.43e-01 -0.0619 0.0806 0.37 Mono L1
ENSG00000088035 ALG6 -478373 sc-eQTL 6.72e-02 0.154 0.0836 0.37 Mono L1
ENSG00000116641 DOCK7 200816 sc-eQTL 8.42e-01 -0.0162 0.0814 0.37 Mono L1
ENSG00000125703 ATG4C 105070 sc-eQTL 7.11e-01 -0.0204 0.055 0.37 Mono L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.60e-01 -0.00436 0.087 0.37 Mono L1
ENSG00000162607 USP1 452905 sc-eQTL 4.25e-01 0.057 0.0713 0.37 Mono L1
ENSG00000240563 L1TD1 694353 sc-eQTL 7.90e-01 0.0178 0.0667 0.37 Mono L1
ENSG00000079739 PGM1 -704209 sc-eQTL 5.79e-01 -0.0386 0.0696 0.371 NK L1
ENSG00000088035 ALG6 -478373 sc-eQTL 7.99e-01 -0.0208 0.0816 0.371 NK L1
ENSG00000116641 DOCK7 200816 sc-eQTL 5.03e-01 -0.0451 0.0671 0.371 NK L1
ENSG00000125703 ATG4C 105070 sc-eQTL 5.89e-01 -0.039 0.0721 0.371 NK L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 5.29e-01 0.0565 0.0896 0.371 NK L1
ENSG00000162607 USP1 452905 sc-eQTL 4.08e-01 -0.0664 0.08 0.371 NK L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 4.19e-01 0.0787 0.0973 0.371 NK L1
ENSG00000079739 PGM1 -704209 sc-eQTL 1.94e-01 0.102 0.0783 0.37 Other_T L1
ENSG00000088035 ALG6 -478373 sc-eQTL 3.58e-01 -0.0726 0.0788 0.37 Other_T L1
ENSG00000116641 DOCK7 200816 sc-eQTL 8.81e-01 -0.0121 0.0806 0.37 Other_T L1
ENSG00000125703 ATG4C 105070 sc-eQTL 1.00e-02 -0.179 0.0687 0.37 Other_T L1
ENSG00000142856 ITGB3BP -704519 sc-eQTL 1.08e-01 0.0993 0.0615 0.37 Other_T L1
ENSG00000162607 USP1 452905 sc-eQTL 9.03e-01 -0.00656 0.0537 0.37 Other_T L1
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.74e-01 -0.0152 0.0955 0.37 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -704209 sc-eQTL 4.79e-01 0.0757 0.107 0.367 B_Activated L2
ENSG00000088035 ALG6 -478373 sc-eQTL 5.08e-01 0.0679 0.102 0.367 B_Activated L2
ENSG00000116641 DOCK7 200816 sc-eQTL 7.98e-01 0.0245 0.0953 0.367 B_Activated L2
ENSG00000125703 ATG4C 105070 sc-eQTL 8.53e-02 0.172 0.0994 0.367 B_Activated L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 2.89e-02 0.213 0.0966 0.367 B_Activated L2
ENSG00000162607 USP1 452905 sc-eQTL 6.60e-01 0.0467 0.106 0.367 B_Activated L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.20e-01 0.0211 0.0927 0.367 B_Activated L2
ENSG00000079739 PGM1 -704209 sc-eQTL 8.11e-01 0.023 0.0965 0.369 B_Intermediate L2
ENSG00000088035 ALG6 -478373 sc-eQTL 8.81e-01 -0.0146 0.098 0.369 B_Intermediate L2
ENSG00000116641 DOCK7 200816 sc-eQTL 7.63e-01 0.0283 0.0936 0.369 B_Intermediate L2
ENSG00000125703 ATG4C 105070 sc-eQTL 8.14e-01 0.0187 0.0792 0.369 B_Intermediate L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 6.25e-01 -0.0461 0.0943 0.369 B_Intermediate L2
ENSG00000162607 USP1 452905 sc-eQTL 4.74e-01 -0.0675 0.0941 0.369 B_Intermediate L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 2.42e-01 0.109 0.0932 0.369 B_Intermediate L2
ENSG00000079739 PGM1 -704209 sc-eQTL 9.23e-01 0.009 0.0935 0.371 B_Memory L2
ENSG00000088035 ALG6 -478373 sc-eQTL 2.85e-01 0.102 0.0948 0.371 B_Memory L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.93e-01 -0.0478 0.0891 0.371 B_Memory L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.23e-01 0.03 0.0847 0.371 B_Memory L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 8.71e-01 0.0157 0.097 0.371 B_Memory L2
ENSG00000162607 USP1 452905 sc-eQTL 1.02e-01 -0.16 0.0972 0.371 B_Memory L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 5.88e-02 0.181 0.0955 0.371 B_Memory L2
ENSG00000079739 PGM1 -704209 sc-eQTL 4.75e-01 -0.0676 0.0945 0.37 B_Naive1 L2
ENSG00000088035 ALG6 -478373 sc-eQTL 2.72e-01 -0.104 0.0947 0.37 B_Naive1 L2
ENSG00000116641 DOCK7 200816 sc-eQTL 3.74e-01 0.081 0.0908 0.37 B_Naive1 L2
ENSG00000125703 ATG4C 105070 sc-eQTL 3.94e-02 -0.144 0.0694 0.37 B_Naive1 L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 2.44e-01 0.108 0.0927 0.37 B_Naive1 L2
ENSG00000162607 USP1 452905 sc-eQTL 8.50e-02 0.14 0.0812 0.37 B_Naive1 L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 5.21e-02 0.192 0.0983 0.37 B_Naive1 L2
ENSG00000079739 PGM1 -704209 sc-eQTL 5.64e-01 -0.054 0.0934 0.369 B_Naive2 L2
ENSG00000088035 ALG6 -478373 sc-eQTL 6.55e-01 -0.0436 0.0974 0.369 B_Naive2 L2
ENSG00000116641 DOCK7 200816 sc-eQTL 7.97e-01 0.0242 0.0937 0.369 B_Naive2 L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.32e-01 -0.0309 0.0902 0.369 B_Naive2 L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 7.72e-01 0.0283 0.0978 0.369 B_Naive2 L2
ENSG00000162607 USP1 452905 sc-eQTL 5.30e-01 0.0585 0.0931 0.369 B_Naive2 L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.31e-01 -0.0467 0.0973 0.369 B_Naive2 L2
ENSG00000079739 PGM1 -704209 sc-eQTL 1.76e-02 0.224 0.0935 0.377 CD4_CTL L2
ENSG00000088035 ALG6 -478373 sc-eQTL 7.77e-01 -0.0284 0.1 0.377 CD4_CTL L2
ENSG00000116641 DOCK7 200816 sc-eQTL 2.46e-01 -0.102 0.0874 0.377 CD4_CTL L2
ENSG00000125703 ATG4C 105070 sc-eQTL 5.32e-01 -0.0567 0.0907 0.377 CD4_CTL L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.20e-01 -0.00972 0.097 0.377 CD4_CTL L2
ENSG00000162607 USP1 452905 sc-eQTL 6.54e-01 -0.0414 0.0923 0.377 CD4_CTL L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 1.21e-01 0.143 0.0917 0.377 CD4_CTL L2
ENSG00000079739 PGM1 -704209 sc-eQTL 9.97e-01 -0.000296 0.0754 0.37 CD4_Naive L2
ENSG00000088035 ALG6 -478373 sc-eQTL 7.27e-01 0.0286 0.0819 0.37 CD4_Naive L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.28e-01 0.0508 0.0804 0.37 CD4_Naive L2
ENSG00000125703 ATG4C 105070 sc-eQTL 8.11e-01 0.0171 0.0711 0.37 CD4_Naive L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.94e-01 0.0741 0.0868 0.37 CD4_Naive L2
ENSG00000162607 USP1 452905 sc-eQTL 3.09e-01 -0.0676 0.0662 0.37 CD4_Naive L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.45e-02 -0.149 0.0857 0.37 CD4_Naive L2
ENSG00000079739 PGM1 -704209 sc-eQTL 7.80e-01 -0.0221 0.0789 0.37 CD4_TCM L2
ENSG00000088035 ALG6 -478373 sc-eQTL 1.11e-01 0.146 0.091 0.37 CD4_TCM L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.49e-01 0.0487 0.0811 0.37 CD4_TCM L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.26e-01 0.0277 0.079 0.37 CD4_TCM L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 2.09e-01 -0.117 0.0928 0.37 CD4_TCM L2
ENSG00000162607 USP1 452905 sc-eQTL 4.44e-01 -0.0584 0.0763 0.37 CD4_TCM L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 1.45e-01 -0.131 0.0897 0.37 CD4_TCM L2
ENSG00000079739 PGM1 -704209 sc-eQTL 6.94e-01 0.0367 0.093 0.37 CD4_TEM L2
ENSG00000088035 ALG6 -478373 sc-eQTL 2.43e-01 0.109 0.0932 0.37 CD4_TEM L2
ENSG00000116641 DOCK7 200816 sc-eQTL 8.04e-01 0.0226 0.0911 0.37 CD4_TEM L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.01e-01 0.034 0.0885 0.37 CD4_TEM L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.20e-01 0.00915 0.0913 0.37 CD4_TEM L2
ENSG00000162607 USP1 452905 sc-eQTL 7.35e-01 -0.0293 0.0865 0.37 CD4_TEM L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 1.26e-01 0.145 0.0941 0.37 CD4_TEM L2
ENSG00000079739 PGM1 -704209 sc-eQTL 6.92e-01 -0.0339 0.0855 0.37 CD8_CTL L2
ENSG00000088035 ALG6 -478373 sc-eQTL 4.93e-01 0.0624 0.0909 0.37 CD8_CTL L2
ENSG00000116641 DOCK7 200816 sc-eQTL 3.95e-01 0.0735 0.0862 0.37 CD8_CTL L2
ENSG00000125703 ATG4C 105070 sc-eQTL 1.44e-02 -0.224 0.0906 0.37 CD8_CTL L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.18e-01 0.0954 0.0953 0.37 CD8_CTL L2
ENSG00000162607 USP1 452905 sc-eQTL 3.74e-01 -0.076 0.0854 0.37 CD8_CTL L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 3.52e-01 -0.0911 0.0977 0.37 CD8_CTL L2
ENSG00000079739 PGM1 -704209 sc-eQTL 8.94e-01 0.0115 0.0866 0.37 CD8_Naive L2
ENSG00000088035 ALG6 -478373 sc-eQTL 4.62e-01 0.0659 0.0895 0.37 CD8_Naive L2
ENSG00000116641 DOCK7 200816 sc-eQTL 1.86e-01 0.122 0.0922 0.37 CD8_Naive L2
ENSG00000125703 ATG4C 105070 sc-eQTL 2.39e-02 -0.2 0.0879 0.37 CD8_Naive L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.10e-01 -0.0102 0.0901 0.37 CD8_Naive L2
ENSG00000162607 USP1 452905 sc-eQTL 9.97e-01 -0.000273 0.0761 0.37 CD8_Naive L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.45e-01 -0.0166 0.0849 0.37 CD8_Naive L2
ENSG00000079739 PGM1 -704209 sc-eQTL 6.71e-02 0.175 0.0949 0.368 CD8_TCM L2
ENSG00000088035 ALG6 -478373 sc-eQTL 2.34e-01 -0.115 0.0965 0.368 CD8_TCM L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.86e-01 -0.0515 0.0945 0.368 CD8_TCM L2
ENSG00000125703 ATG4C 105070 sc-eQTL 3.56e-01 0.0893 0.0965 0.368 CD8_TCM L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.29e-01 -0.00836 0.094 0.368 CD8_TCM L2
ENSG00000162607 USP1 452905 sc-eQTL 9.79e-01 -0.00238 0.0904 0.368 CD8_TCM L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 4.32e-03 -0.271 0.0938 0.368 CD8_TCM L2
ENSG00000079739 PGM1 -704209 sc-eQTL 6.06e-01 -0.0514 0.0995 0.358 CD8_TEM L2
ENSG00000088035 ALG6 -478373 sc-eQTL 8.20e-02 -0.173 0.0991 0.358 CD8_TEM L2
ENSG00000116641 DOCK7 200816 sc-eQTL 4.45e-01 -0.074 0.0967 0.358 CD8_TEM L2
ENSG00000125703 ATG4C 105070 sc-eQTL 2.27e-02 -0.211 0.0919 0.358 CD8_TEM L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 1.13e-01 -0.16 0.1 0.358 CD8_TEM L2
ENSG00000162607 USP1 452905 sc-eQTL 1.87e-01 0.127 0.0957 0.358 CD8_TEM L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 5.70e-01 0.0556 0.0976 0.358 CD8_TEM L2
ENSG00000079739 PGM1 -704209 sc-eQTL 7.97e-02 0.159 0.0901 0.37 MAIT L2
ENSG00000088035 ALG6 -478373 sc-eQTL 6.13e-01 -0.0455 0.0898 0.37 MAIT L2
ENSG00000116641 DOCK7 200816 sc-eQTL 9.82e-01 0.00192 0.0861 0.37 MAIT L2
ENSG00000125703 ATG4C 105070 sc-eQTL 9.21e-02 -0.153 0.0901 0.37 MAIT L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.37e-01 0.0873 0.0907 0.37 MAIT L2
ENSG00000162607 USP1 452905 sc-eQTL 6.68e-01 0.0388 0.0902 0.37 MAIT L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.35e-01 -0.0444 0.0936 0.37 MAIT L2
ENSG00000079739 PGM1 -704209 sc-eQTL 7.59e-01 0.0277 0.0901 0.371 NK_CD56bright L2
ENSG00000088035 ALG6 -478373 sc-eQTL 5.41e-01 0.0565 0.0923 0.371 NK_CD56bright L2
ENSG00000116641 DOCK7 200816 sc-eQTL 4.40e-02 0.161 0.0792 0.371 NK_CD56bright L2
ENSG00000125703 ATG4C 105070 sc-eQTL 1.68e-01 0.123 0.089 0.371 NK_CD56bright L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 7.17e-01 0.0338 0.0931 0.371 NK_CD56bright L2
ENSG00000162607 USP1 452905 sc-eQTL 7.68e-01 0.0283 0.096 0.371 NK_CD56bright L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 1.86e-01 0.121 0.0915 0.371 NK_CD56bright L2
ENSG00000079739 PGM1 -704209 sc-eQTL 4.98e-01 0.0488 0.0719 0.373 NK_CD56dim L2
ENSG00000088035 ALG6 -478373 sc-eQTL 7.25e-01 0.0322 0.0912 0.373 NK_CD56dim L2
ENSG00000116641 DOCK7 200816 sc-eQTL 3.45e-01 -0.075 0.0792 0.373 NK_CD56dim L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.91e-01 0.0215 0.0806 0.373 NK_CD56dim L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 4.29e-01 0.0726 0.0916 0.373 NK_CD56dim L2
ENSG00000162607 USP1 452905 sc-eQTL 4.44e-01 -0.0682 0.0889 0.373 NK_CD56dim L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.36e-01 0.0205 0.0991 0.373 NK_CD56dim L2
ENSG00000079739 PGM1 -704209 sc-eQTL 5.70e-01 -0.0561 0.0985 0.368 NK_HLA L2
ENSG00000088035 ALG6 -478373 sc-eQTL 4.28e-01 0.0811 0.102 0.368 NK_HLA L2
ENSG00000116641 DOCK7 200816 sc-eQTL 8.09e-01 -0.0189 0.0781 0.368 NK_HLA L2
ENSG00000125703 ATG4C 105070 sc-eQTL 1.54e-02 -0.219 0.0895 0.368 NK_HLA L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 8.43e-01 -0.019 0.0954 0.368 NK_HLA L2
ENSG00000162607 USP1 452905 sc-eQTL 4.64e-01 -0.0732 0.0997 0.368 NK_HLA L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 8.80e-01 -0.0138 0.0909 0.368 NK_HLA L2
ENSG00000079739 PGM1 -704209 sc-eQTL 4.36e-01 -0.0616 0.0789 0.373 NK_cytokine L2
ENSG00000088035 ALG6 -478373 sc-eQTL 3.47e-02 -0.188 0.0884 0.373 NK_cytokine L2
ENSG00000116641 DOCK7 200816 sc-eQTL 8.33e-01 -0.0175 0.0827 0.373 NK_cytokine L2
ENSG00000125703 ATG4C 105070 sc-eQTL 4.62e-01 -0.0622 0.0845 0.373 NK_cytokine L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 4.29e-01 0.0693 0.0875 0.373 NK_cytokine L2
ENSG00000162607 USP1 452905 sc-eQTL 8.99e-01 0.0117 0.0922 0.373 NK_cytokine L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 9.67e-01 -0.00393 0.0934 0.373 NK_cytokine L2
ENSG00000079739 PGM1 -704209 sc-eQTL 5.83e-01 0.0599 0.109 0.359 PB L2
ENSG00000088035 ALG6 -478373 sc-eQTL 8.72e-01 -0.0184 0.114 0.359 PB L2
ENSG00000116641 DOCK7 200816 sc-eQTL 4.12e-01 -0.1 0.122 0.359 PB L2
ENSG00000125703 ATG4C 105070 sc-eQTL 5.17e-01 -0.0691 0.106 0.359 PB L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 7.85e-01 0.0292 0.106 0.359 PB L2
ENSG00000162607 USP1 452905 sc-eQTL 9.28e-01 -0.00966 0.106 0.359 PB L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 5.73e-01 -0.0659 0.117 0.359 PB L2
ENSG00000079739 PGM1 -704209 sc-eQTL 3.09e-01 -0.088 0.0863 0.367 Pro_T L2
ENSG00000088035 ALG6 -478373 sc-eQTL 4.96e-01 0.0599 0.0879 0.367 Pro_T L2
ENSG00000116641 DOCK7 200816 sc-eQTL 8.00e-01 -0.0224 0.0883 0.367 Pro_T L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.00e-01 -0.0298 0.0773 0.367 Pro_T L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.08e-02 0.167 0.0767 0.367 Pro_T L2
ENSG00000162607 USP1 452905 sc-eQTL 9.18e-01 0.0055 0.0533 0.367 Pro_T L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 7.15e-01 -0.0329 0.09 0.367 Pro_T L2
ENSG00000079739 PGM1 -704209 sc-eQTL 8.24e-01 -0.0202 0.0906 0.37 Treg L2
ENSG00000088035 ALG6 -478373 sc-eQTL 7.97e-01 0.0249 0.0969 0.37 Treg L2
ENSG00000116641 DOCK7 200816 sc-eQTL 9.36e-01 -0.00714 0.089 0.37 Treg L2
ENSG00000125703 ATG4C 105070 sc-eQTL 6.95e-01 -0.0357 0.0909 0.37 Treg L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.88e-01 -0.0821 0.0949 0.37 Treg L2
ENSG00000162607 USP1 452905 sc-eQTL 5.15e-01 0.0599 0.0919 0.37 Treg L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.10e-01 0.0464 0.0909 0.37 Treg L2
ENSG00000079739 PGM1 -704209 sc-eQTL 3.53e-01 0.0823 0.0883 0.38 cDC L2
ENSG00000088035 ALG6 -478373 sc-eQTL 6.26e-02 0.167 0.0889 0.38 cDC L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.78e-01 -0.049 0.088 0.38 cDC L2
ENSG00000125703 ATG4C 105070 sc-eQTL 5.28e-01 0.0484 0.0764 0.38 cDC L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.53e-01 -0.0901 0.0968 0.38 cDC L2
ENSG00000162607 USP1 452905 sc-eQTL 6.78e-01 -0.0359 0.0863 0.38 cDC L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 7.56e-01 0.0242 0.0779 0.38 cDC L2
ENSG00000079739 PGM1 -704209 sc-eQTL 4.61e-01 -0.062 0.0839 0.37 cMono_IL1B L2
ENSG00000088035 ALG6 -478373 sc-eQTL 5.86e-02 0.158 0.0834 0.37 cMono_IL1B L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.70e-01 -0.0503 0.0886 0.37 cMono_IL1B L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.65e-01 -0.0186 0.0623 0.37 cMono_IL1B L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 6.41e-01 0.0413 0.0883 0.37 cMono_IL1B L2
ENSG00000162607 USP1 452905 sc-eQTL 4.15e-01 0.0635 0.0778 0.37 cMono_IL1B L2
ENSG00000240563 L1TD1 694353 sc-eQTL 9.78e-01 0.0022 0.0782 0.37 cMono_IL1B L2
ENSG00000079739 PGM1 -704209 sc-eQTL 2.73e-01 -0.102 0.0925 0.37 cMono_S100A L2
ENSG00000088035 ALG6 -478373 sc-eQTL 3.75e-01 0.0834 0.0939 0.37 cMono_S100A L2
ENSG00000116641 DOCK7 200816 sc-eQTL 2.94e-01 0.0916 0.087 0.37 cMono_S100A L2
ENSG00000125703 ATG4C 105070 sc-eQTL 7.14e-01 -0.0277 0.0755 0.37 cMono_S100A L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 6.61e-01 -0.0374 0.0851 0.37 cMono_S100A L2
ENSG00000162607 USP1 452905 sc-eQTL 8.04e-01 -0.0218 0.0876 0.37 cMono_S100A L2
ENSG00000240563 L1TD1 694353 sc-eQTL 2.51e-01 -0.0837 0.0727 0.37 cMono_S100A L2
ENSG00000079739 PGM1 -704209 sc-eQTL 6.81e-01 0.0442 0.107 0.37 gdT L2
ENSG00000088035 ALG6 -478373 sc-eQTL 8.37e-01 0.0236 0.114 0.37 gdT L2
ENSG00000116641 DOCK7 200816 sc-eQTL 8.34e-01 0.0236 0.112 0.37 gdT L2
ENSG00000125703 ATG4C 105070 sc-eQTL 9.42e-01 0.00777 0.107 0.37 gdT L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 8.40e-02 0.196 0.113 0.37 gdT L2
ENSG00000162607 USP1 452905 sc-eQTL 6.06e-01 0.0556 0.108 0.37 gdT L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 9.61e-01 -0.00547 0.112 0.37 gdT L2
ENSG00000079739 PGM1 -704209 sc-eQTL 7.99e-01 -0.0238 0.0931 0.369 intMono L2
ENSG00000088035 ALG6 -478373 sc-eQTL 4.67e-01 -0.063 0.0866 0.369 intMono L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.00e-01 -0.0598 0.0884 0.369 intMono L2
ENSG00000125703 ATG4C 105070 sc-eQTL 8.35e-01 0.0176 0.0845 0.369 intMono L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 4.33e-01 -0.073 0.093 0.369 intMono L2
ENSG00000162607 USP1 452905 sc-eQTL 2.80e-01 0.102 0.0944 0.369 intMono L2
ENSG00000240563 L1TD1 694353 sc-eQTL 4.80e-01 0.0492 0.0696 0.369 intMono L2
ENSG00000079739 PGM1 -704209 sc-eQTL 5.90e-01 0.0461 0.0855 0.371 ncMono L2
ENSG00000088035 ALG6 -478373 sc-eQTL 6.84e-01 -0.0382 0.0939 0.371 ncMono L2
ENSG00000116641 DOCK7 200816 sc-eQTL 5.07e-01 0.0614 0.0924 0.371 ncMono L2
ENSG00000125703 ATG4C 105070 sc-eQTL 6.82e-01 -0.0354 0.0863 0.371 ncMono L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 6.52e-01 -0.0408 0.0903 0.371 ncMono L2
ENSG00000162607 USP1 452905 sc-eQTL 9.15e-01 0.0099 0.0923 0.371 ncMono L2
ENSG00000240563 L1TD1 694353 sc-eQTL 2.71e-01 0.072 0.0653 0.371 ncMono L2
ENSG00000079739 PGM1 -704209 sc-eQTL 7.45e-01 -0.0332 0.102 0.373 pDC L2
ENSG00000088035 ALG6 -478373 sc-eQTL 1.56e-02 -0.238 0.0973 0.373 pDC L2
ENSG00000116641 DOCK7 200816 sc-eQTL 6.52e-01 0.0457 0.101 0.373 pDC L2
ENSG00000125703 ATG4C 105070 sc-eQTL 3.53e-01 -0.0843 0.0906 0.373 pDC L2
ENSG00000142856 ITGB3BP -704519 sc-eQTL 1.34e-01 0.153 0.101 0.373 pDC L2
ENSG00000162607 USP1 452905 sc-eQTL 2.84e-01 -0.111 0.104 0.373 pDC L2
ENSG00000203965 EFCAB7 -634170 sc-eQTL 6.78e-01 0.0376 0.0902 0.373 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -704209 sc-eQTL 5.87e-01 0.0483 0.0887 0.37 B_Memory LOneK1K
ENSG00000088035 ALG6 -478373 sc-eQTL 5.18e-01 0.0635 0.0981 0.37 B_Memory LOneK1K
ENSG00000116641 DOCK7 200816 sc-eQTL 5.13e-01 -0.0558 0.0851 0.37 B_Memory LOneK1K
ENSG00000125703 ATG4C 105070 sc-eQTL 2.99e-01 0.0716 0.0687 0.37 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -704519 sc-eQTL 4.62e-01 0.0666 0.0904 0.37 B_Memory LOneK1K
ENSG00000162607 USP1 452905 sc-eQTL 2.81e-01 -0.0946 0.0876 0.37 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -634170 sc-eQTL 7.35e-02 0.168 0.0936 0.37 B_Memory LOneK1K
ENSG00000079739 PGM1 -704209 sc-eQTL 4.65e-01 -0.067 0.0915 0.37 B_Naive LOneK1K
ENSG00000088035 ALG6 -478373 sc-eQTL 2.32e-01 -0.113 0.094 0.37 B_Naive LOneK1K
ENSG00000116641 DOCK7 200816 sc-eQTL 2.99e-01 0.0915 0.0878 0.37 B_Naive LOneK1K
ENSG00000125703 ATG4C 105070 sc-eQTL 1.54e-02 -0.162 0.0663 0.37 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -704519 sc-eQTL 1.73e-01 0.129 0.0946 0.37 B_Naive LOneK1K
ENSG00000162607 USP1 452905 sc-eQTL 1.54e-01 0.116 0.0812 0.37 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -634170 sc-eQTL 2.14e-01 0.119 0.0951 0.37 B_Naive LOneK1K
ENSG00000079739 PGM1 -704209 sc-eQTL 3.64e-01 -0.0775 0.0853 0.37 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -478373 sc-eQTL 6.00e-02 0.155 0.0821 0.37 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 200816 sc-eQTL 9.70e-01 -0.00314 0.0833 0.37 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 105070 sc-eQTL 5.57e-01 -0.0339 0.0576 0.37 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -704519 sc-eQTL 9.15e-01 -0.00914 0.0852 0.37 CD14_Mono LOneK1K
ENSG00000162607 USP1 452905 sc-eQTL 5.03e-01 0.0488 0.0727 0.37 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 694353 sc-eQTL 5.55e-01 -0.0467 0.0789 0.37 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -704209 sc-eQTL 7.63e-01 0.0247 0.0818 0.371 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -478373 sc-eQTL 6.89e-01 -0.0372 0.0929 0.371 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 200816 sc-eQTL 9.93e-01 -0.000797 0.0919 0.371 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 105070 sc-eQTL 7.35e-01 -0.0265 0.0783 0.371 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -704519 sc-eQTL 3.56e-01 -0.084 0.0908 0.371 CD16_Mono LOneK1K
ENSG00000162607 USP1 452905 sc-eQTL 1.81e-01 0.114 0.0851 0.371 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 694353 sc-eQTL 2.43e-01 0.068 0.0581 0.371 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -704209 sc-eQTL 7.03e-01 -0.027 0.0706 0.373 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -478373 sc-eQTL 6.23e-01 -0.0417 0.0847 0.373 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 200816 sc-eQTL 3.23e-01 -0.0751 0.0758 0.373 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 105070 sc-eQTL 5.58e-01 -0.0444 0.0757 0.373 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -704519 sc-eQTL 5.45e-01 0.0544 0.0898 0.373 NK_CD56dim LOneK1K
ENSG00000162607 USP1 452905 sc-eQTL 6.35e-01 -0.0387 0.0815 0.373 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -634170 sc-eQTL 7.41e-01 0.0328 0.0992 0.373 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 200834 eQTL 5.6e-06 -0.101 0.0222 0.0 0.0 0.355
ENSG00000125703 ATG4C 105070 eQTL 0.000201 -0.0631 0.0169 0.0 0.0 0.355
ENSG00000142856 ITGB3BP -704519 eQTL 0.0048 0.0837 0.0296 0.0 0.0 0.355
ENSG00000162607 USP1 452905 eQTL 0.000611 -0.0446 0.013 0.0 0.0 0.355

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 200834 2.23e-06 2.58e-06 3.23e-07 1.63e-06 6.17e-07 7.84e-07 1.56e-06 6.75e-07 1.85e-06 8.92e-07 2.11e-06 1.33e-06 3.49e-06 1.11e-06 9.3e-07 1.65e-06 1.06e-06 2.17e-06 9.43e-07 1.26e-06 1.1e-06 2.82e-06 2.15e-06 9.91e-07 3.16e-06 1.36e-06 1.28e-06 1.64e-06 1.91e-06 1.79e-06 1.29e-06 3.27e-07 5.43e-07 1.24e-06 1.02e-06 9.71e-07 7.72e-07 4.1e-07 1.14e-06 3.97e-07 2.4e-07 2.99e-06 4.14e-07 1.99e-07 2.73e-07 3.15e-07 8.41e-07 2.44e-07 1.53e-07
ENSG00000125703 ATG4C 105070 5.07e-06 5.12e-06 6.57e-07 3.38e-06 1.74e-06 1.54e-06 6.46e-06 1.18e-06 4.83e-06 2.82e-06 6.52e-06 3.27e-06 8.29e-06 1.76e-06 9e-07 3.78e-06 1.93e-06 3.93e-06 1.58e-06 1.71e-06 2.82e-06 5.45e-06 4.74e-06 2.01e-06 8.24e-06 2.11e-06 2.68e-06 1.8e-06 5.45e-06 5.45e-06 2.64e-06 4.84e-07 8.25e-07 2.43e-06 1.96e-06 1.46e-06 1.12e-06 5.14e-07 1.29e-06 7.61e-07 9.55e-07 6.66e-06 4.9e-07 1.61e-07 7.73e-07 1.06e-06 1.04e-06 6.95e-07 6.2e-07
ENSG00000142856 ITGB3BP -704519 3.27e-07 1.59e-07 6.86e-08 2.26e-07 1.08e-07 7.75e-08 2.4e-07 6.2e-08 1.89e-07 1.05e-07 1.86e-07 1.59e-07 2.38e-07 8.15e-08 6.6e-08 9.35e-08 5.42e-08 2.04e-07 7.36e-08 6.02e-08 1.24e-07 1.81e-07 1.69e-07 4.27e-08 2.37e-07 1.51e-07 1.25e-07 1.36e-07 1.39e-07 1.36e-07 1.22e-07 4.85e-08 4.37e-08 9.5e-08 5.65e-08 3.24e-08 3.91e-08 7.49e-08 6.33e-08 6.31e-08 4.53e-08 1.59e-07 3.4e-08 7.47e-09 3.87e-08 6.53e-09 7.26e-08 2.13e-09 4.83e-08