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Genes within 1Mb (chr1:62875174:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -718237 sc-eQTL 3.04e-01 0.0814 0.079 0.607 B L1
ENSG00000088035 ALG6 -492401 sc-eQTL 8.29e-01 0.0177 0.082 0.607 B L1
ENSG00000116641 DOCK7 186788 sc-eQTL 8.00e-01 -0.0208 0.082 0.607 B L1
ENSG00000125703 ATG4C 91042 sc-eQTL 2.23e-01 0.0694 0.0568 0.607 B L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 2.07e-01 -0.114 0.0904 0.607 B L1
ENSG00000162607 USP1 438877 sc-eQTL 7.86e-01 -0.0214 0.0788 0.607 B L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.22e-01 -0.144 0.0925 0.607 B L1
ENSG00000079739 PGM1 -718237 sc-eQTL 7.43e-01 -0.0223 0.0679 0.607 CD4T L1
ENSG00000088035 ALG6 -492401 sc-eQTL 9.23e-01 -0.00729 0.075 0.607 CD4T L1
ENSG00000116641 DOCK7 186788 sc-eQTL 7.50e-01 0.0242 0.0759 0.607 CD4T L1
ENSG00000125703 ATG4C 91042 sc-eQTL 9.15e-01 -0.00657 0.0613 0.607 CD4T L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.32e-01 0.0544 0.0869 0.607 CD4T L1
ENSG00000162607 USP1 438877 sc-eQTL 6.41e-01 0.0278 0.0594 0.607 CD4T L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 9.06e-02 0.132 0.0776 0.607 CD4T L1
ENSG00000079739 PGM1 -718237 sc-eQTL 7.16e-01 0.0275 0.0755 0.607 CD8T L1
ENSG00000088035 ALG6 -492401 sc-eQTL 5.85e-01 -0.0454 0.0832 0.607 CD8T L1
ENSG00000116641 DOCK7 186788 sc-eQTL 8.52e-01 -0.0158 0.0843 0.607 CD8T L1
ENSG00000125703 ATG4C 91042 sc-eQTL 9.92e-03 0.205 0.0788 0.607 CD8T L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.77e-01 0.0139 0.0896 0.607 CD8T L1
ENSG00000162607 USP1 438877 sc-eQTL 5.31e-01 -0.0437 0.0697 0.607 CD8T L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 4.21e-01 0.0718 0.0891 0.607 CD8T L1
ENSG00000079739 PGM1 -718237 sc-eQTL 6.38e-01 -0.0398 0.0845 0.606 DC L1
ENSG00000088035 ALG6 -492401 sc-eQTL 9.79e-01 0.00229 0.0873 0.606 DC L1
ENSG00000116641 DOCK7 186788 sc-eQTL 8.49e-01 0.0171 0.0894 0.606 DC L1
ENSG00000125703 ATG4C 91042 sc-eQTL 9.12e-01 -0.00775 0.07 0.606 DC L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 9.12e-01 -0.0108 0.0978 0.606 DC L1
ENSG00000162607 USP1 438877 sc-eQTL 7.03e-01 0.0326 0.0854 0.606 DC L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 5.65e-01 -0.049 0.0851 0.606 DC L1
ENSG00000079739 PGM1 -718237 sc-eQTL 5.07e-01 0.0544 0.0818 0.607 Mono L1
ENSG00000088035 ALG6 -492401 sc-eQTL 7.89e-02 -0.15 0.0848 0.607 Mono L1
ENSG00000116641 DOCK7 186788 sc-eQTL 5.98e-01 0.0436 0.0826 0.607 Mono L1
ENSG00000125703 ATG4C 91042 sc-eQTL 2.74e-01 0.0611 0.0557 0.607 Mono L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.09e-01 0.0583 0.0881 0.607 Mono L1
ENSG00000162607 USP1 438877 sc-eQTL 3.26e-01 -0.0712 0.0723 0.607 Mono L1
ENSG00000240563 L1TD1 680325 sc-eQTL 3.90e-01 -0.0581 0.0675 0.607 Mono L1
ENSG00000079739 PGM1 -718237 sc-eQTL 2.67e-01 0.0782 0.0703 0.607 NK L1
ENSG00000088035 ALG6 -492401 sc-eQTL 7.80e-01 -0.0232 0.0827 0.607 NK L1
ENSG00000116641 DOCK7 186788 sc-eQTL 9.29e-02 0.114 0.0677 0.607 NK L1
ENSG00000125703 ATG4C 91042 sc-eQTL 8.94e-01 0.00972 0.0732 0.607 NK L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.98e-01 -0.0117 0.0909 0.607 NK L1
ENSG00000162607 USP1 438877 sc-eQTL 9.01e-01 0.0101 0.0813 0.607 NK L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 7.96e-01 -0.0256 0.0987 0.607 NK L1
ENSG00000079739 PGM1 -718237 sc-eQTL 1.81e-01 -0.107 0.08 0.607 Other_T L1
ENSG00000088035 ALG6 -492401 sc-eQTL 3.74e-01 0.0717 0.0805 0.607 Other_T L1
ENSG00000116641 DOCK7 186788 sc-eQTL 9.52e-01 0.00499 0.0824 0.607 Other_T L1
ENSG00000125703 ATG4C 91042 sc-eQTL 3.31e-03 0.208 0.0699 0.607 Other_T L1
ENSG00000142856 ITGB3BP -718547 sc-eQTL 2.22e-01 -0.0772 0.063 0.607 Other_T L1
ENSG00000162607 USP1 438877 sc-eQTL 7.38e-01 -0.0184 0.0548 0.607 Other_T L1
ENSG00000203965 EFCAB7 -648198 sc-eQTL 2.39e-01 0.115 0.0972 0.607 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -718237 sc-eQTL 6.64e-01 -0.0473 0.109 0.602 B_Activated L2
ENSG00000088035 ALG6 -492401 sc-eQTL 5.08e-01 -0.069 0.104 0.602 B_Activated L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.94e-01 -0.0007 0.097 0.602 B_Activated L2
ENSG00000125703 ATG4C 91042 sc-eQTL 5.04e-01 -0.0682 0.102 0.602 B_Activated L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.22e-02 -0.193 0.0986 0.602 B_Activated L2
ENSG00000162607 USP1 438877 sc-eQTL 8.19e-01 -0.0248 0.108 0.602 B_Activated L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 5.61e-01 0.0549 0.0942 0.602 B_Activated L2
ENSG00000079739 PGM1 -718237 sc-eQTL 5.85e-01 -0.0532 0.0974 0.607 B_Intermediate L2
ENSG00000088035 ALG6 -492401 sc-eQTL 8.42e-01 -0.0197 0.099 0.607 B_Intermediate L2
ENSG00000116641 DOCK7 186788 sc-eQTL 5.39e-01 0.0581 0.0944 0.607 B_Intermediate L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.32e-01 -0.0383 0.08 0.607 B_Intermediate L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.45e-01 0.0187 0.0953 0.607 B_Intermediate L2
ENSG00000162607 USP1 438877 sc-eQTL 5.59e-01 0.0556 0.0951 0.607 B_Intermediate L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.82e-01 -0.126 0.094 0.607 B_Intermediate L2
ENSG00000079739 PGM1 -718237 sc-eQTL 9.57e-01 -0.00516 0.0952 0.606 B_Memory L2
ENSG00000088035 ALG6 -492401 sc-eQTL 5.11e-01 -0.0636 0.0966 0.606 B_Memory L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.48e-01 0.0292 0.0907 0.606 B_Memory L2
ENSG00000125703 ATG4C 91042 sc-eQTL 3.82e-01 -0.0753 0.0861 0.606 B_Memory L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.70e-01 -0.0162 0.0987 0.606 B_Memory L2
ENSG00000162607 USP1 438877 sc-eQTL 2.39e-01 0.117 0.0992 0.606 B_Memory L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 4.73e-01 -0.0704 0.0978 0.606 B_Memory L2
ENSG00000079739 PGM1 -718237 sc-eQTL 3.88e-01 0.0821 0.095 0.607 B_Naive1 L2
ENSG00000088035 ALG6 -492401 sc-eQTL 2.24e-01 0.116 0.0952 0.607 B_Naive1 L2
ENSG00000116641 DOCK7 186788 sc-eQTL 3.18e-01 -0.0914 0.0913 0.607 B_Naive1 L2
ENSG00000125703 ATG4C 91042 sc-eQTL 2.84e-02 0.154 0.0697 0.607 B_Naive1 L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.15e-01 -0.0939 0.0933 0.607 B_Naive1 L2
ENSG00000162607 USP1 438877 sc-eQTL 1.19e-01 -0.128 0.0818 0.607 B_Naive1 L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.29e-01 -0.151 0.0992 0.607 B_Naive1 L2
ENSG00000079739 PGM1 -718237 sc-eQTL 1.73e-01 0.129 0.0941 0.607 B_Naive2 L2
ENSG00000088035 ALG6 -492401 sc-eQTL 6.40e-01 -0.0462 0.0985 0.607 B_Naive2 L2
ENSG00000116641 DOCK7 186788 sc-eQTL 8.07e-01 0.0231 0.0947 0.607 B_Naive2 L2
ENSG00000125703 ATG4C 91042 sc-eQTL 4.69e-01 0.066 0.0911 0.607 B_Naive2 L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.94e-01 -0.0132 0.0989 0.607 B_Naive2 L2
ENSG00000162607 USP1 438877 sc-eQTL 7.40e-01 -0.0312 0.0941 0.607 B_Naive2 L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 8.87e-01 -0.014 0.0984 0.607 B_Naive2 L2
ENSG00000079739 PGM1 -718237 sc-eQTL 6.31e-02 -0.177 0.0946 0.602 CD4_CTL L2
ENSG00000088035 ALG6 -492401 sc-eQTL 6.72e-01 0.0428 0.101 0.602 CD4_CTL L2
ENSG00000116641 DOCK7 186788 sc-eQTL 1.11e-01 0.14 0.0877 0.602 CD4_CTL L2
ENSG00000125703 ATG4C 91042 sc-eQTL 5.33e-01 0.057 0.0912 0.602 CD4_CTL L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 1.13e-01 0.154 0.097 0.602 CD4_CTL L2
ENSG00000162607 USP1 438877 sc-eQTL 9.64e-01 0.00425 0.0929 0.602 CD4_CTL L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.73e-01 -0.126 0.0923 0.602 CD4_CTL L2
ENSG00000079739 PGM1 -718237 sc-eQTL 8.99e-01 0.0097 0.0761 0.607 CD4_Naive L2
ENSG00000088035 ALG6 -492401 sc-eQTL 5.20e-01 0.0533 0.0826 0.607 CD4_Naive L2
ENSG00000116641 DOCK7 186788 sc-eQTL 5.99e-01 -0.0428 0.0812 0.607 CD4_Naive L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.57e-01 -0.032 0.0718 0.607 CD4_Naive L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 7.33e-01 -0.03 0.0878 0.607 CD4_Naive L2
ENSG00000162607 USP1 438877 sc-eQTL 4.06e-01 0.0557 0.067 0.607 CD4_Naive L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.43e-02 0.212 0.086 0.607 CD4_Naive L2
ENSG00000079739 PGM1 -718237 sc-eQTL 9.80e-01 0.00196 0.0797 0.607 CD4_TCM L2
ENSG00000088035 ALG6 -492401 sc-eQTL 7.27e-02 -0.166 0.0918 0.607 CD4_TCM L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.05e-01 -0.00976 0.082 0.607 CD4_TCM L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.95e-01 0.0313 0.0798 0.607 CD4_TCM L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 1.64e-01 0.131 0.0937 0.607 CD4_TCM L2
ENSG00000162607 USP1 438877 sc-eQTL 8.82e-01 -0.0115 0.0772 0.607 CD4_TCM L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 3.35e-01 0.0877 0.0909 0.607 CD4_TCM L2
ENSG00000079739 PGM1 -718237 sc-eQTL 8.12e-01 -0.0223 0.094 0.607 CD4_TEM L2
ENSG00000088035 ALG6 -492401 sc-eQTL 3.31e-01 -0.0918 0.0943 0.607 CD4_TEM L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.57e-01 -0.00492 0.0921 0.607 CD4_TEM L2
ENSG00000125703 ATG4C 91042 sc-eQTL 9.07e-01 0.0105 0.0895 0.607 CD4_TEM L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 7.81e-01 0.0257 0.0924 0.607 CD4_TEM L2
ENSG00000162607 USP1 438877 sc-eQTL 5.17e-01 0.0567 0.0874 0.607 CD4_TEM L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.92e-01 -0.125 0.0953 0.607 CD4_TEM L2
ENSG00000079739 PGM1 -718237 sc-eQTL 1.71e-01 0.118 0.0861 0.607 CD8_CTL L2
ENSG00000088035 ALG6 -492401 sc-eQTL 2.91e-01 -0.097 0.0917 0.607 CD8_CTL L2
ENSG00000116641 DOCK7 186788 sc-eQTL 2.46e-01 0.101 0.087 0.607 CD8_CTL L2
ENSG00000125703 ATG4C 91042 sc-eQTL 2.13e-02 0.213 0.0917 0.607 CD8_CTL L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 6.71e-01 -0.0411 0.0965 0.607 CD8_CTL L2
ENSG00000162607 USP1 438877 sc-eQTL 6.24e-01 0.0424 0.0865 0.607 CD8_CTL L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 2.79e-01 0.107 0.0987 0.607 CD8_CTL L2
ENSG00000079739 PGM1 -718237 sc-eQTL 6.34e-01 0.0417 0.0875 0.607 CD8_Naive L2
ENSG00000088035 ALG6 -492401 sc-eQTL 3.49e-01 -0.0848 0.0904 0.607 CD8_Naive L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.56e-02 -0.166 0.093 0.607 CD8_Naive L2
ENSG00000125703 ATG4C 91042 sc-eQTL 8.63e-02 0.154 0.0893 0.607 CD8_Naive L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 9.20e-01 0.00918 0.0911 0.607 CD8_Naive L2
ENSG00000162607 USP1 438877 sc-eQTL 8.64e-01 -0.0132 0.077 0.607 CD8_Naive L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 4.29e-01 0.0679 0.0857 0.607 CD8_Naive L2
ENSG00000079739 PGM1 -718237 sc-eQTL 4.64e-03 -0.272 0.095 0.604 CD8_TCM L2
ENSG00000088035 ALG6 -492401 sc-eQTL 1.11e-01 0.156 0.0975 0.604 CD8_TCM L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.26e-01 0.0336 0.0958 0.604 CD8_TCM L2
ENSG00000125703 ATG4C 91042 sc-eQTL 8.53e-01 -0.0182 0.098 0.604 CD8_TCM L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.11e-01 0.0627 0.0951 0.604 CD8_TCM L2
ENSG00000162607 USP1 438877 sc-eQTL 9.04e-01 -0.0111 0.0916 0.604 CD8_TCM L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.30e-02 0.24 0.0955 0.604 CD8_TCM L2
ENSG00000079739 PGM1 -718237 sc-eQTL 4.90e-01 0.0693 0.1 0.616 CD8_TEM L2
ENSG00000088035 ALG6 -492401 sc-eQTL 2.40e-02 0.226 0.0993 0.616 CD8_TEM L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.04e-01 0.0118 0.0975 0.616 CD8_TEM L2
ENSG00000125703 ATG4C 91042 sc-eQTL 3.56e-02 0.196 0.0927 0.616 CD8_TEM L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 6.91e-01 0.0403 0.101 0.616 CD8_TEM L2
ENSG00000162607 USP1 438877 sc-eQTL 3.05e-01 -0.0992 0.0966 0.616 CD8_TEM L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 8.92e-01 -0.0134 0.0984 0.616 CD8_TEM L2
ENSG00000079739 PGM1 -718237 sc-eQTL 1.19e-01 -0.143 0.091 0.606 MAIT L2
ENSG00000088035 ALG6 -492401 sc-eQTL 9.99e-01 -9.46e-05 0.0906 0.606 MAIT L2
ENSG00000116641 DOCK7 186788 sc-eQTL 6.94e-01 -0.0342 0.0868 0.606 MAIT L2
ENSG00000125703 ATG4C 91042 sc-eQTL 2.07e-02 0.211 0.0904 0.606 MAIT L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.30e-01 -0.0577 0.0916 0.606 MAIT L2
ENSG00000162607 USP1 438877 sc-eQTL 5.18e-01 0.0588 0.0909 0.606 MAIT L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 3.01e-01 0.0977 0.0942 0.606 MAIT L2
ENSG00000079739 PGM1 -718237 sc-eQTL 6.71e-01 -0.0394 0.0927 0.604 NK_CD56bright L2
ENSG00000088035 ALG6 -492401 sc-eQTL 8.25e-01 -0.021 0.0951 0.604 NK_CD56bright L2
ENSG00000116641 DOCK7 186788 sc-eQTL 1.31e-01 -0.124 0.0819 0.604 NK_CD56bright L2
ENSG00000125703 ATG4C 91042 sc-eQTL 3.09e-01 -0.0937 0.0918 0.604 NK_CD56bright L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 7.67e-01 0.0285 0.0958 0.604 NK_CD56bright L2
ENSG00000162607 USP1 438877 sc-eQTL 5.23e-01 0.0632 0.0987 0.604 NK_CD56bright L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.81e-01 -0.126 0.0941 0.604 NK_CD56bright L2
ENSG00000079739 PGM1 -718237 sc-eQTL 6.52e-01 -0.033 0.0731 0.606 NK_CD56dim L2
ENSG00000088035 ALG6 -492401 sc-eQTL 5.24e-01 -0.0592 0.0927 0.606 NK_CD56dim L2
ENSG00000116641 DOCK7 186788 sc-eQTL 2.09e-01 0.101 0.0805 0.606 NK_CD56dim L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.64e-01 -0.0356 0.082 0.606 NK_CD56dim L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.25e-01 -0.0593 0.0933 0.606 NK_CD56dim L2
ENSG00000162607 USP1 438877 sc-eQTL 8.78e-01 0.0139 0.0905 0.606 NK_CD56dim L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 7.35e-01 0.0342 0.101 0.606 NK_CD56dim L2
ENSG00000079739 PGM1 -718237 sc-eQTL 3.75e-01 0.0873 0.0983 0.61 NK_HLA L2
ENSG00000088035 ALG6 -492401 sc-eQTL 1.78e-01 -0.137 0.102 0.61 NK_HLA L2
ENSG00000116641 DOCK7 186788 sc-eQTL 6.73e-01 0.033 0.078 0.61 NK_HLA L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.58e-02 0.167 0.09 0.61 NK_HLA L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 9.46e-01 -0.00642 0.0953 0.61 NK_HLA L2
ENSG00000162607 USP1 438877 sc-eQTL 7.68e-01 0.0295 0.0997 0.61 NK_HLA L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 4.75e-01 0.0649 0.0907 0.61 NK_HLA L2
ENSG00000079739 PGM1 -718237 sc-eQTL 1.54e-01 0.113 0.0791 0.606 NK_cytokine L2
ENSG00000088035 ALG6 -492401 sc-eQTL 7.69e-02 0.158 0.0891 0.606 NK_cytokine L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.47e-02 0.139 0.0827 0.606 NK_cytokine L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.23e-01 0.0419 0.0851 0.606 NK_cytokine L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 7.06e-01 -0.0333 0.0881 0.606 NK_cytokine L2
ENSG00000162607 USP1 438877 sc-eQTL 9.85e-01 -0.00176 0.0927 0.606 NK_cytokine L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 5.40e-01 0.0577 0.0938 0.606 NK_cytokine L2
ENSG00000079739 PGM1 -718237 sc-eQTL 9.40e-01 0.0082 0.109 0.607 PB L2
ENSG00000088035 ALG6 -492401 sc-eQTL 8.60e-01 0.0201 0.114 0.607 PB L2
ENSG00000116641 DOCK7 186788 sc-eQTL 8.78e-01 -0.0188 0.122 0.607 PB L2
ENSG00000125703 ATG4C 91042 sc-eQTL 4.43e-01 0.0817 0.106 0.607 PB L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.26e-01 -0.0234 0.106 0.607 PB L2
ENSG00000162607 USP1 438877 sc-eQTL 8.20e-01 0.0242 0.106 0.607 PB L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 7.72e-01 0.0338 0.116 0.607 PB L2
ENSG00000079739 PGM1 -718237 sc-eQTL 7.78e-01 0.0243 0.0863 0.607 Pro_T L2
ENSG00000088035 ALG6 -492401 sc-eQTL 9.03e-01 -0.0107 0.0878 0.607 Pro_T L2
ENSG00000116641 DOCK7 186788 sc-eQTL 2.63e-01 0.0986 0.0878 0.607 Pro_T L2
ENSG00000125703 ATG4C 91042 sc-eQTL 9.26e-01 0.00714 0.0771 0.607 Pro_T L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.86e-02 -0.159 0.0765 0.607 Pro_T L2
ENSG00000162607 USP1 438877 sc-eQTL 6.56e-01 0.0237 0.0532 0.607 Pro_T L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 1.05e-01 0.146 0.0893 0.607 Pro_T L2
ENSG00000079739 PGM1 -718237 sc-eQTL 6.89e-01 0.0367 0.0917 0.607 Treg L2
ENSG00000088035 ALG6 -492401 sc-eQTL 7.39e-01 0.0327 0.098 0.607 Treg L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.12e-01 0.0333 0.09 0.607 Treg L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.52e-01 0.0415 0.092 0.607 Treg L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.46e-01 0.0907 0.096 0.607 Treg L2
ENSG00000162607 USP1 438877 sc-eQTL 6.77e-01 -0.0388 0.0931 0.607 Treg L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 8.40e-01 -0.0186 0.0921 0.607 Treg L2
ENSG00000079739 PGM1 -718237 sc-eQTL 3.98e-01 -0.0767 0.0904 0.602 cDC L2
ENSG00000088035 ALG6 -492401 sc-eQTL 7.55e-02 -0.163 0.0911 0.602 cDC L2
ENSG00000116641 DOCK7 186788 sc-eQTL 4.78e-01 0.0641 0.0901 0.602 cDC L2
ENSG00000125703 ATG4C 91042 sc-eQTL 5.29e-01 -0.0493 0.0782 0.602 cDC L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 5.38e-01 0.0612 0.0992 0.602 cDC L2
ENSG00000162607 USP1 438877 sc-eQTL 6.46e-01 0.0406 0.0883 0.602 cDC L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 8.12e-01 0.019 0.0797 0.602 cDC L2
ENSG00000079739 PGM1 -718237 sc-eQTL 2.56e-01 0.0963 0.0846 0.607 cMono_IL1B L2
ENSG00000088035 ALG6 -492401 sc-eQTL 4.61e-02 -0.169 0.0842 0.607 cMono_IL1B L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.46e-01 0.029 0.0896 0.607 cMono_IL1B L2
ENSG00000125703 ATG4C 91042 sc-eQTL 3.87e-01 0.0546 0.0629 0.607 cMono_IL1B L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 4.71e-01 0.0644 0.0892 0.607 cMono_IL1B L2
ENSG00000162607 USP1 438877 sc-eQTL 5.16e-01 -0.0512 0.0787 0.607 cMono_IL1B L2
ENSG00000240563 L1TD1 680325 sc-eQTL 7.11e-01 -0.0293 0.0791 0.607 cMono_IL1B L2
ENSG00000079739 PGM1 -718237 sc-eQTL 5.40e-01 0.0577 0.0939 0.607 cMono_S100A L2
ENSG00000088035 ALG6 -492401 sc-eQTL 2.19e-01 -0.117 0.0949 0.607 cMono_S100A L2
ENSG00000116641 DOCK7 186788 sc-eQTL 9.95e-01 0.000594 0.0883 0.607 cMono_S100A L2
ENSG00000125703 ATG4C 91042 sc-eQTL 7.78e-01 0.0215 0.0764 0.607 cMono_S100A L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 4.18e-01 0.0698 0.0861 0.607 cMono_S100A L2
ENSG00000162607 USP1 438877 sc-eQTL 5.54e-01 -0.0525 0.0887 0.607 cMono_S100A L2
ENSG00000240563 L1TD1 680325 sc-eQTL 2.80e-01 0.0797 0.0736 0.607 cMono_S100A L2
ENSG00000079739 PGM1 -718237 sc-eQTL 3.29e-01 -0.105 0.107 0.612 gdT L2
ENSG00000088035 ALG6 -492401 sc-eQTL 3.60e-01 -0.105 0.115 0.612 gdT L2
ENSG00000116641 DOCK7 186788 sc-eQTL 4.06e-01 0.0937 0.112 0.612 gdT L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.02e-01 -0.0562 0.108 0.612 gdT L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.51e-01 -0.107 0.114 0.612 gdT L2
ENSG00000162607 USP1 438877 sc-eQTL 1.80e-01 -0.145 0.108 0.612 gdT L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 7.62e-01 0.0341 0.112 0.612 gdT L2
ENSG00000079739 PGM1 -718237 sc-eQTL 5.88e-01 0.0507 0.0934 0.609 intMono L2
ENSG00000088035 ALG6 -492401 sc-eQTL 3.98e-01 0.0737 0.0869 0.609 intMono L2
ENSG00000116641 DOCK7 186788 sc-eQTL 5.87e-01 0.0484 0.0889 0.609 intMono L2
ENSG00000125703 ATG4C 91042 sc-eQTL 6.93e-01 -0.0335 0.0849 0.609 intMono L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 4.81e-01 0.0659 0.0934 0.609 intMono L2
ENSG00000162607 USP1 438877 sc-eQTL 5.91e-01 -0.0511 0.095 0.609 intMono L2
ENSG00000240563 L1TD1 680325 sc-eQTL 3.51e-01 -0.0653 0.0698 0.609 intMono L2
ENSG00000079739 PGM1 -718237 sc-eQTL 4.92e-01 -0.0601 0.0873 0.613 ncMono L2
ENSG00000088035 ALG6 -492401 sc-eQTL 3.36e-01 0.0924 0.0959 0.613 ncMono L2
ENSG00000116641 DOCK7 186788 sc-eQTL 8.33e-01 -0.0199 0.0945 0.613 ncMono L2
ENSG00000125703 ATG4C 91042 sc-eQTL 3.39e-01 0.0844 0.0881 0.613 ncMono L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 6.56e-01 0.0412 0.0923 0.613 ncMono L2
ENSG00000162607 USP1 438877 sc-eQTL 9.45e-01 -0.00657 0.0944 0.613 ncMono L2
ENSG00000240563 L1TD1 680325 sc-eQTL 3.13e-01 -0.0675 0.0668 0.613 ncMono L2
ENSG00000079739 PGM1 -718237 sc-eQTL 9.67e-01 -0.00435 0.105 0.61 pDC L2
ENSG00000088035 ALG6 -492401 sc-eQTL 5.51e-02 0.196 0.102 0.61 pDC L2
ENSG00000116641 DOCK7 186788 sc-eQTL 7.58e-01 -0.0324 0.105 0.61 pDC L2
ENSG00000125703 ATG4C 91042 sc-eQTL 2.55e-01 0.107 0.0938 0.61 pDC L2
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.63e-02 -0.181 0.105 0.61 pDC L2
ENSG00000162607 USP1 438877 sc-eQTL 3.33e-01 0.104 0.107 0.61 pDC L2
ENSG00000203965 EFCAB7 -648198 sc-eQTL 6.88e-01 -0.0376 0.0935 0.61 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -718237 sc-eQTL 5.69e-01 -0.0513 0.0899 0.607 B_Memory LOneK1K
ENSG00000088035 ALG6 -492401 sc-eQTL 3.94e-01 -0.0849 0.0993 0.607 B_Memory LOneK1K
ENSG00000116641 DOCK7 186788 sc-eQTL 2.41e-01 0.101 0.0861 0.607 B_Memory LOneK1K
ENSG00000125703 ATG4C 91042 sc-eQTL 3.61e-01 -0.0638 0.0697 0.607 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -718547 sc-eQTL 4.67e-01 -0.0667 0.0916 0.607 B_Memory LOneK1K
ENSG00000162607 USP1 438877 sc-eQTL 2.54e-01 0.102 0.0888 0.607 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -648198 sc-eQTL 2.03e-01 -0.122 0.0952 0.607 B_Memory LOneK1K
ENSG00000079739 PGM1 -718237 sc-eQTL 1.81e-01 0.123 0.092 0.607 B_Naive LOneK1K
ENSG00000088035 ALG6 -492401 sc-eQTL 3.13e-01 0.0959 0.0949 0.607 B_Naive LOneK1K
ENSG00000116641 DOCK7 186788 sc-eQTL 5.91e-01 -0.0477 0.0887 0.607 B_Naive LOneK1K
ENSG00000125703 ATG4C 91042 sc-eQTL 6.31e-03 0.184 0.0666 0.607 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.27e-01 -0.094 0.0956 0.607 B_Naive LOneK1K
ENSG00000162607 USP1 438877 sc-eQTL 2.03e-01 -0.105 0.082 0.607 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -648198 sc-eQTL 2.67e-01 -0.107 0.096 0.607 B_Naive LOneK1K
ENSG00000079739 PGM1 -718237 sc-eQTL 4.28e-01 0.0686 0.0863 0.607 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -492401 sc-eQTL 3.36e-02 -0.177 0.0828 0.607 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 186788 sc-eQTL 7.62e-01 0.0255 0.0843 0.607 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 91042 sc-eQTL 3.02e-01 0.0602 0.0581 0.607 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -718547 sc-eQTL 3.42e-01 0.082 0.086 0.607 CD14_Mono LOneK1K
ENSG00000162607 USP1 438877 sc-eQTL 2.76e-01 -0.0802 0.0734 0.607 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 680325 sc-eQTL 7.12e-01 0.0295 0.0798 0.607 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -718237 sc-eQTL 7.45e-01 0.027 0.0828 0.608 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -492401 sc-eQTL 1.64e-01 0.131 0.0936 0.608 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 186788 sc-eQTL 9.37e-01 0.00733 0.0931 0.608 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 91042 sc-eQTL 7.89e-01 0.0212 0.0793 0.608 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -718547 sc-eQTL 4.41e-01 0.0711 0.092 0.608 CD16_Mono LOneK1K
ENSG00000162607 USP1 438877 sc-eQTL 3.20e-01 -0.0861 0.0864 0.608 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 680325 sc-eQTL 9.40e-02 -0.0987 0.0587 0.608 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -718237 sc-eQTL 3.27e-01 0.0704 0.0716 0.606 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -492401 sc-eQTL 9.99e-01 -8.33e-05 0.0861 0.606 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 186788 sc-eQTL 3.38e-02 0.163 0.0763 0.606 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 91042 sc-eQTL 9.84e-01 0.00154 0.077 0.606 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -718547 sc-eQTL 8.20e-01 -0.0207 0.0913 0.606 NK_CD56dim LOneK1K
ENSG00000162607 USP1 438877 sc-eQTL 7.08e-01 -0.031 0.0828 0.606 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -648198 sc-eQTL 6.58e-01 0.0447 0.101 0.606 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 186806 eQTL 1.37e-06 0.108 0.0223 0.0 0.0 0.359
ENSG00000125703 ATG4C 91042 eQTL 3.37e-05 0.0708 0.017 0.00252 0.0029 0.359
ENSG00000132855 ANGPTL3 277687 pQTL 0.0305 0.0643 0.0297 0.0 0.0 0.367
ENSG00000142856 ITGB3BP -718547 eQTL 0.00323 -0.0878 0.0297 0.0 0.0 0.359
ENSG00000162607 USP1 438877 eQTL 0.00102 0.043 0.0131 0.0 0.0 0.359

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 186806 5.01e-06 5.79e-06 6.48e-07 3.39e-06 1.32e-06 1.64e-06 5.71e-06 1.04e-06 4.95e-06 2.4e-06 5.99e-06 3.36e-06 9.42e-06 1.86e-06 1.23e-06 3.81e-06 1.89e-06 3.71e-06 1.55e-06 1.21e-06 2.9e-06 4.95e-06 4.43e-06 1.65e-06 8.16e-06 1.76e-06 2.49e-06 1.81e-06 4.46e-06 4.34e-06 2.57e-06 4.96e-07 5.05e-07 1.64e-06 1.95e-06 9.61e-07 1.06e-06 4.39e-07 9.82e-07 7.42e-07 7.46e-07 7.11e-06 4.37e-07 1.55e-07 3.75e-07 6.75e-07 9.33e-07 4.42e-07 1.94e-07
ENSG00000125703 ATG4C 91042 1.1e-05 1.29e-05 1.93e-06 7.89e-06 2.48e-06 5.16e-06 1.38e-05 2.15e-06 1.14e-05 5.47e-06 1.45e-05 6.53e-06 2.31e-05 4.89e-06 3.58e-06 6.93e-06 6.49e-06 9.52e-06 2.98e-06 3.09e-06 6.06e-06 1.06e-05 1.07e-05 3.73e-06 2.1e-05 4.49e-06 5.98e-06 4.99e-06 1.24e-05 1.03e-05 7.97e-06 1.06e-06 1.23e-06 3.69e-06 5.84e-06 2.79e-06 1.8e-06 1.99e-06 2.26e-06 1.54e-06 1.11e-06 1.68e-05 1.63e-06 1.92e-07 8.27e-07 1.78e-06 1.73e-06 7.13e-07 4.54e-07
ENSG00000142856 ITGB3BP -718547 5.37e-07 3.11e-07 7.87e-08 3.05e-07 1.07e-07 1.25e-07 3.7e-07 6.12e-08 2.53e-07 1.21e-07 2.62e-07 2.22e-07 5.39e-07 9.15e-08 9.2e-08 1.13e-07 8.64e-08 2.56e-07 8.93e-08 8.25e-08 1.39e-07 2.09e-07 2.2e-07 7.36e-08 3.55e-07 1.76e-07 1.31e-07 1.61e-07 1.58e-07 2.52e-07 1.78e-07 6.31e-08 4.93e-08 1.18e-07 1.97e-07 4.68e-08 9.11e-08 7.98e-08 6.01e-08 2.56e-08 1.23e-07 2.72e-07 2.28e-08 1.8e-08 5.84e-08 8.59e-09 8.93e-08 3.09e-09 4.83e-08
ENSG00000162607 USP1 438877 1.26e-06 9.53e-07 3.35e-07 9.43e-07 1.81e-07 4.63e-07 1.24e-06 2.64e-07 1.2e-06 3.89e-07 1.35e-06 6.08e-07 2.01e-06 2.9e-07 4.38e-07 6.36e-07 8.26e-07 5.68e-07 5.26e-07 6.99e-07 3.35e-07 9.57e-07 7.76e-07 5.86e-07 1.94e-06 3.02e-07 6.3e-07 6e-07 9.65e-07 1.2e-06 5.67e-07 2.61e-07 2.31e-07 5.78e-07 5.63e-07 3.21e-07 5.03e-07 2.38e-07 4.75e-07 2.97e-07 2.59e-07 1.62e-06 5.04e-08 5.68e-08 1.69e-07 7.77e-08 1.8e-07 8.25e-08 6.12e-08