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Genes within 1Mb (chr1:62871663:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -721748 sc-eQTL 4.14e-01 0.0635 0.0777 0.594 B L1
ENSG00000088035 ALG6 -495912 sc-eQTL 9.86e-01 -0.00142 0.0806 0.594 B L1
ENSG00000116641 DOCK7 183277 sc-eQTL 7.28e-01 -0.028 0.0806 0.594 B L1
ENSG00000125703 ATG4C 87531 sc-eQTL 2.97e-01 0.0584 0.0559 0.594 B L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 2.59e-01 -0.101 0.0889 0.594 B L1
ENSG00000162607 USP1 435366 sc-eQTL 9.25e-01 0.00733 0.0774 0.594 B L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.05e-01 -0.148 0.0908 0.594 B L1
ENSG00000079739 PGM1 -721748 sc-eQTL 9.61e-01 0.00328 0.0667 0.594 CD4T L1
ENSG00000088035 ALG6 -495912 sc-eQTL 7.98e-01 -0.0189 0.0736 0.594 CD4T L1
ENSG00000116641 DOCK7 183277 sc-eQTL 6.57e-01 0.0331 0.0745 0.594 CD4T L1
ENSG00000125703 ATG4C 87531 sc-eQTL 9.17e-01 0.00626 0.0602 0.594 CD4T L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 4.02e-01 0.0716 0.0853 0.594 CD4T L1
ENSG00000162607 USP1 435366 sc-eQTL 6.97e-01 0.0227 0.0583 0.594 CD4T L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 6.98e-02 0.139 0.0761 0.594 CD4T L1
ENSG00000079739 PGM1 -721748 sc-eQTL 7.59e-01 0.0227 0.0739 0.594 CD8T L1
ENSG00000088035 ALG6 -495912 sc-eQTL 6.95e-01 -0.032 0.0815 0.594 CD8T L1
ENSG00000116641 DOCK7 183277 sc-eQTL 8.24e-01 -0.0184 0.0826 0.594 CD8T L1
ENSG00000125703 ATG4C 87531 sc-eQTL 3.36e-02 0.166 0.0776 0.594 CD8T L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 7.32e-01 0.03 0.0877 0.594 CD8T L1
ENSG00000162607 USP1 435366 sc-eQTL 4.42e-01 -0.0525 0.0682 0.594 CD8T L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.95e-01 0.0744 0.0873 0.594 CD8T L1
ENSG00000079739 PGM1 -721748 sc-eQTL 4.90e-01 -0.0568 0.0821 0.592 DC L1
ENSG00000088035 ALG6 -495912 sc-eQTL 8.68e-01 0.0141 0.0848 0.592 DC L1
ENSG00000116641 DOCK7 183277 sc-eQTL 8.74e-01 0.0137 0.0869 0.592 DC L1
ENSG00000125703 ATG4C 87531 sc-eQTL 7.85e-01 -0.0186 0.068 0.592 DC L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.49e-01 -0.0182 0.0951 0.592 DC L1
ENSG00000162607 USP1 435366 sc-eQTL 6.48e-01 0.0379 0.083 0.592 DC L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 5.00e-01 -0.0558 0.0827 0.592 DC L1
ENSG00000079739 PGM1 -721748 sc-eQTL 3.09e-01 0.0818 0.0802 0.594 Mono L1
ENSG00000088035 ALG6 -495912 sc-eQTL 1.22e-01 -0.13 0.0834 0.594 Mono L1
ENSG00000116641 DOCK7 183277 sc-eQTL 3.43e-01 0.0769 0.0809 0.594 Mono L1
ENSG00000125703 ATG4C 87531 sc-eQTL 1.82e-01 0.0731 0.0546 0.594 Mono L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 4.71e-01 0.0625 0.0865 0.594 Mono L1
ENSG00000162607 USP1 435366 sc-eQTL 3.90e-01 -0.0611 0.071 0.594 Mono L1
ENSG00000240563 L1TD1 676814 sc-eQTL 5.07e-01 -0.0441 0.0663 0.594 Mono L1
ENSG00000079739 PGM1 -721748 sc-eQTL 3.19e-01 0.069 0.0691 0.594 NK L1
ENSG00000088035 ALG6 -495912 sc-eQTL 8.88e-01 -0.0115 0.0812 0.594 NK L1
ENSG00000116641 DOCK7 183277 sc-eQTL 5.53e-02 0.128 0.0663 0.594 NK L1
ENSG00000125703 ATG4C 87531 sc-eQTL 8.79e-01 -0.0109 0.0718 0.594 NK L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.91e-01 0.0123 0.0893 0.594 NK L1
ENSG00000162607 USP1 435366 sc-eQTL 8.06e-01 -0.0196 0.0798 0.594 NK L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 9.35e-01 -0.0079 0.0969 0.594 NK L1
ENSG00000079739 PGM1 -721748 sc-eQTL 3.20e-01 -0.0779 0.0781 0.594 Other_T L1
ENSG00000088035 ALG6 -495912 sc-eQTL 2.30e-01 0.0943 0.0783 0.594 Other_T L1
ENSG00000116641 DOCK7 183277 sc-eQTL 9.29e-01 0.00721 0.0802 0.594 Other_T L1
ENSG00000125703 ATG4C 87531 sc-eQTL 2.07e-03 0.212 0.0679 0.594 Other_T L1
ENSG00000142856 ITGB3BP -722058 sc-eQTL 2.76e-01 -0.0671 0.0614 0.594 Other_T L1
ENSG00000162607 USP1 435366 sc-eQTL 8.07e-01 -0.0131 0.0534 0.594 Other_T L1
ENSG00000203965 EFCAB7 -651709 sc-eQTL 2.83e-01 0.102 0.0948 0.594 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -721748 sc-eQTL 5.85e-01 -0.0589 0.108 0.592 B_Activated L2
ENSG00000088035 ALG6 -495912 sc-eQTL 3.90e-01 -0.0886 0.103 0.592 B_Activated L2
ENSG00000116641 DOCK7 183277 sc-eQTL 8.41e-01 0.0193 0.096 0.592 B_Activated L2
ENSG00000125703 ATG4C 87531 sc-eQTL 5.45e-01 -0.0611 0.101 0.592 B_Activated L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.04e-02 -0.172 0.0978 0.592 B_Activated L2
ENSG00000162607 USP1 435366 sc-eQTL 9.25e-01 -0.0101 0.107 0.592 B_Activated L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 6.75e-01 0.0392 0.0933 0.592 B_Activated L2
ENSG00000079739 PGM1 -721748 sc-eQTL 6.75e-01 -0.04 0.0952 0.594 B_Intermediate L2
ENSG00000088035 ALG6 -495912 sc-eQTL 6.56e-01 -0.0431 0.0967 0.594 B_Intermediate L2
ENSG00000116641 DOCK7 183277 sc-eQTL 5.26e-01 0.0586 0.0923 0.594 B_Intermediate L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.83e-01 -0.032 0.0782 0.594 B_Intermediate L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.96e-01 0.0122 0.0932 0.594 B_Intermediate L2
ENSG00000162607 USP1 435366 sc-eQTL 5.16e-01 0.0605 0.0929 0.594 B_Intermediate L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.02e-01 -0.151 0.0917 0.594 B_Intermediate L2
ENSG00000079739 PGM1 -721748 sc-eQTL 7.90e-01 -0.0247 0.0928 0.593 B_Memory L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.20e-01 -0.0761 0.0943 0.593 B_Memory L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.29e-01 0.0307 0.0885 0.593 B_Memory L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.07e-01 -0.0433 0.0841 0.593 B_Memory L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 9.09e-01 -0.011 0.0963 0.593 B_Memory L2
ENSG00000162607 USP1 435366 sc-eQTL 2.36e-01 0.115 0.0968 0.593 B_Memory L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 7.59e-01 -0.0293 0.0956 0.593 B_Memory L2
ENSG00000079739 PGM1 -721748 sc-eQTL 6.19e-01 0.0465 0.0934 0.594 B_Naive1 L2
ENSG00000088035 ALG6 -495912 sc-eQTL 2.39e-01 0.11 0.0935 0.594 B_Naive1 L2
ENSG00000116641 DOCK7 183277 sc-eQTL 2.08e-01 -0.113 0.0895 0.594 B_Naive1 L2
ENSG00000125703 ATG4C 87531 sc-eQTL 3.29e-02 0.147 0.0685 0.594 B_Naive1 L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.78e-01 -0.081 0.0917 0.594 B_Naive1 L2
ENSG00000162607 USP1 435366 sc-eQTL 1.45e-01 -0.118 0.0803 0.594 B_Naive1 L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.54e-01 -0.14 0.0975 0.594 B_Naive1 L2
ENSG00000079739 PGM1 -721748 sc-eQTL 2.82e-01 0.0995 0.0923 0.594 B_Naive2 L2
ENSG00000088035 ALG6 -495912 sc-eQTL 3.95e-01 -0.0821 0.0963 0.594 B_Naive2 L2
ENSG00000116641 DOCK7 183277 sc-eQTL 8.75e-01 0.0147 0.0928 0.594 B_Naive2 L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.67e-01 0.0385 0.0893 0.594 B_Naive2 L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 9.65e-01 -0.00421 0.0969 0.594 B_Naive2 L2
ENSG00000162607 USP1 435366 sc-eQTL 8.81e-01 0.0138 0.0922 0.594 B_Naive2 L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 6.84e-01 -0.0393 0.0964 0.594 B_Naive2 L2
ENSG00000079739 PGM1 -721748 sc-eQTL 6.06e-02 -0.174 0.0921 0.589 CD4_CTL L2
ENSG00000088035 ALG6 -495912 sc-eQTL 6.00e-01 0.0515 0.0982 0.589 CD4_CTL L2
ENSG00000116641 DOCK7 183277 sc-eQTL 1.25e-01 0.132 0.0854 0.589 CD4_CTL L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.55e-01 0.0398 0.0888 0.589 CD4_CTL L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 9.64e-02 0.158 0.0944 0.589 CD4_CTL L2
ENSG00000162607 USP1 435366 sc-eQTL 9.39e-01 -0.00694 0.0904 0.589 CD4_CTL L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.02e-01 -0.0932 0.09 0.589 CD4_CTL L2
ENSG00000079739 PGM1 -721748 sc-eQTL 5.68e-01 0.0428 0.0747 0.594 CD4_Naive L2
ENSG00000088035 ALG6 -495912 sc-eQTL 6.88e-01 0.0326 0.0812 0.594 CD4_Naive L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.52e-01 -0.0252 0.0798 0.594 CD4_Naive L2
ENSG00000125703 ATG4C 87531 sc-eQTL 8.41e-01 -0.0142 0.0705 0.594 CD4_Naive L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 9.90e-01 0.00105 0.0862 0.594 CD4_Naive L2
ENSG00000162607 USP1 435366 sc-eQTL 4.75e-01 0.0471 0.0658 0.594 CD4_Naive L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 8.44e-03 0.224 0.0842 0.594 CD4_Naive L2
ENSG00000079739 PGM1 -721748 sc-eQTL 9.35e-01 -0.00638 0.0781 0.594 CD4_TCM L2
ENSG00000088035 ALG6 -495912 sc-eQTL 1.05e-01 -0.147 0.0902 0.594 CD4_TCM L2
ENSG00000116641 DOCK7 183277 sc-eQTL 9.52e-01 -0.00487 0.0804 0.594 CD4_TCM L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.11e-01 0.0398 0.0782 0.594 CD4_TCM L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 2.62e-01 0.103 0.092 0.594 CD4_TCM L2
ENSG00000162607 USP1 435366 sc-eQTL 9.82e-01 0.00166 0.0757 0.594 CD4_TCM L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.90e-01 0.0769 0.0892 0.594 CD4_TCM L2
ENSG00000079739 PGM1 -721748 sc-eQTL 9.58e-01 -0.00488 0.0921 0.594 CD4_TEM L2
ENSG00000088035 ALG6 -495912 sc-eQTL 3.44e-01 -0.0877 0.0924 0.594 CD4_TEM L2
ENSG00000116641 DOCK7 183277 sc-eQTL 9.71e-01 -0.00329 0.0903 0.594 CD4_TEM L2
ENSG00000125703 ATG4C 87531 sc-eQTL 8.80e-01 0.0132 0.0877 0.594 CD4_TEM L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 6.39e-01 0.0425 0.0904 0.594 CD4_TEM L2
ENSG00000162607 USP1 435366 sc-eQTL 5.42e-01 0.0524 0.0856 0.594 CD4_TEM L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.28e-01 -0.143 0.0932 0.594 CD4_TEM L2
ENSG00000079739 PGM1 -721748 sc-eQTL 1.57e-01 0.12 0.0843 0.594 CD8_CTL L2
ENSG00000088035 ALG6 -495912 sc-eQTL 3.73e-01 -0.0802 0.0898 0.594 CD8_CTL L2
ENSG00000116641 DOCK7 183277 sc-eQTL 3.42e-01 0.0813 0.0852 0.594 CD8_CTL L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.13e-02 0.185 0.09 0.594 CD8_CTL L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.29e-01 -0.0204 0.0945 0.594 CD8_CTL L2
ENSG00000162607 USP1 435366 sc-eQTL 8.06e-01 0.0208 0.0847 0.594 CD8_CTL L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 2.09e-01 0.122 0.0965 0.594 CD8_CTL L2
ENSG00000079739 PGM1 -721748 sc-eQTL 6.27e-01 0.0418 0.0857 0.594 CD8_Naive L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.74e-01 -0.0636 0.0887 0.594 CD8_Naive L2
ENSG00000116641 DOCK7 183277 sc-eQTL 6.39e-02 -0.17 0.0911 0.594 CD8_Naive L2
ENSG00000125703 ATG4C 87531 sc-eQTL 1.16e-01 0.138 0.0876 0.594 CD8_Naive L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.32e-01 0.0189 0.0892 0.594 CD8_Naive L2
ENSG00000162607 USP1 435366 sc-eQTL 7.82e-01 -0.0209 0.0754 0.594 CD8_Naive L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 5.22e-01 0.054 0.0841 0.594 CD8_Naive L2
ENSG00000079739 PGM1 -721748 sc-eQTL 3.63e-03 -0.273 0.0928 0.59 CD8_TCM L2
ENSG00000088035 ALG6 -495912 sc-eQTL 6.61e-02 0.176 0.0952 0.59 CD8_TCM L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.27e-01 0.0328 0.0937 0.59 CD8_TCM L2
ENSG00000125703 ATG4C 87531 sc-eQTL 7.71e-01 -0.0279 0.0958 0.59 CD8_TCM L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 4.87e-01 0.0648 0.093 0.59 CD8_TCM L2
ENSG00000162607 USP1 435366 sc-eQTL 8.88e-01 -0.0127 0.0896 0.59 CD8_TCM L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.50e-03 0.274 0.0928 0.59 CD8_TCM L2
ENSG00000079739 PGM1 -721748 sc-eQTL 4.27e-01 0.0784 0.0984 0.603 CD8_TEM L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.76e-02 0.195 0.098 0.603 CD8_TEM L2
ENSG00000116641 DOCK7 183277 sc-eQTL 9.48e-01 0.00622 0.0959 0.603 CD8_TEM L2
ENSG00000125703 ATG4C 87531 sc-eQTL 7.85e-02 0.162 0.0915 0.603 CD8_TEM L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 6.07e-01 0.0514 0.0998 0.603 CD8_TEM L2
ENSG00000162607 USP1 435366 sc-eQTL 2.45e-01 -0.111 0.0949 0.603 CD8_TEM L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 8.44e-01 -0.0191 0.0968 0.603 CD8_TEM L2
ENSG00000079739 PGM1 -721748 sc-eQTL 1.35e-01 -0.133 0.0888 0.593 MAIT L2
ENSG00000088035 ALG6 -495912 sc-eQTL 9.56e-01 0.00491 0.0884 0.593 MAIT L2
ENSG00000116641 DOCK7 183277 sc-eQTL 6.80e-01 -0.035 0.0847 0.593 MAIT L2
ENSG00000125703 ATG4C 87531 sc-eQTL 1.23e-02 0.222 0.088 0.593 MAIT L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 6.72e-01 -0.0379 0.0894 0.593 MAIT L2
ENSG00000162607 USP1 435366 sc-eQTL 6.22e-01 0.0438 0.0887 0.593 MAIT L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 2.81e-01 0.0994 0.0919 0.593 MAIT L2
ENSG00000079739 PGM1 -721748 sc-eQTL 7.93e-01 -0.0239 0.0908 0.591 NK_CD56bright L2
ENSG00000088035 ALG6 -495912 sc-eQTL 9.07e-01 -0.0109 0.0931 0.591 NK_CD56bright L2
ENSG00000116641 DOCK7 183277 sc-eQTL 4.94e-02 -0.158 0.0799 0.591 NK_CD56bright L2
ENSG00000125703 ATG4C 87531 sc-eQTL 1.27e-01 -0.137 0.0896 0.591 NK_CD56bright L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 9.16e-01 0.00994 0.0938 0.591 NK_CD56bright L2
ENSG00000162607 USP1 435366 sc-eQTL 5.71e-01 0.0549 0.0967 0.591 NK_CD56bright L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.41e-01 -0.136 0.0921 0.591 NK_CD56bright L2
ENSG00000079739 PGM1 -721748 sc-eQTL 4.94e-01 -0.0492 0.0718 0.593 NK_CD56dim L2
ENSG00000088035 ALG6 -495912 sc-eQTL 6.24e-01 -0.0447 0.0912 0.593 NK_CD56dim L2
ENSG00000116641 DOCK7 183277 sc-eQTL 1.07e-01 0.128 0.0789 0.593 NK_CD56dim L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.62e-01 -0.0353 0.0806 0.593 NK_CD56dim L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.53e-01 -0.017 0.0917 0.593 NK_CD56dim L2
ENSG00000162607 USP1 435366 sc-eQTL 8.99e-01 -0.0113 0.089 0.593 NK_CD56dim L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 8.01e-01 0.025 0.0991 0.593 NK_CD56dim L2
ENSG00000079739 PGM1 -721748 sc-eQTL 2.40e-01 0.113 0.0962 0.598 NK_HLA L2
ENSG00000088035 ALG6 -495912 sc-eQTL 2.78e-01 -0.109 0.0998 0.598 NK_HLA L2
ENSG00000116641 DOCK7 183277 sc-eQTL 4.30e-01 0.0605 0.0765 0.598 NK_HLA L2
ENSG00000125703 ATG4C 87531 sc-eQTL 1.25e-01 0.136 0.0885 0.598 NK_HLA L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.14e-01 0.0221 0.0935 0.598 NK_HLA L2
ENSG00000162607 USP1 435366 sc-eQTL 9.45e-01 0.00673 0.0979 0.598 NK_HLA L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.09e-01 0.0905 0.0888 0.598 NK_HLA L2
ENSG00000079739 PGM1 -721748 sc-eQTL 1.64e-01 0.109 0.0777 0.593 NK_cytokine L2
ENSG00000088035 ALG6 -495912 sc-eQTL 8.24e-02 0.153 0.0875 0.593 NK_cytokine L2
ENSG00000116641 DOCK7 183277 sc-eQTL 5.87e-02 0.154 0.081 0.593 NK_cytokine L2
ENSG00000125703 ATG4C 87531 sc-eQTL 7.10e-01 0.0311 0.0835 0.593 NK_cytokine L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.15e-01 -0.0202 0.0865 0.593 NK_cytokine L2
ENSG00000162607 USP1 435366 sc-eQTL 6.74e-01 -0.0384 0.091 0.593 NK_cytokine L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 3.83e-01 0.0805 0.092 0.593 NK_cytokine L2
ENSG00000079739 PGM1 -721748 sc-eQTL 6.88e-01 0.0419 0.104 0.596 PB L2
ENSG00000088035 ALG6 -495912 sc-eQTL 8.15e-01 -0.0257 0.109 0.596 PB L2
ENSG00000116641 DOCK7 183277 sc-eQTL 8.57e-01 -0.0212 0.117 0.596 PB L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.63e-01 0.075 0.102 0.596 PB L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 7.89e-01 -0.0273 0.102 0.596 PB L2
ENSG00000162607 USP1 435366 sc-eQTL 8.09e-01 0.0245 0.101 0.596 PB L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 5.98e-01 0.0591 0.112 0.596 PB L2
ENSG00000079739 PGM1 -721748 sc-eQTL 7.46e-01 0.0274 0.0844 0.593 Pro_T L2
ENSG00000088035 ALG6 -495912 sc-eQTL 7.28e-01 0.0299 0.0859 0.593 Pro_T L2
ENSG00000116641 DOCK7 183277 sc-eQTL 2.24e-01 0.105 0.0859 0.593 Pro_T L2
ENSG00000125703 ATG4C 87531 sc-eQTL 6.12e-01 0.0384 0.0754 0.593 Pro_T L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.34e-02 -0.16 0.0749 0.593 Pro_T L2
ENSG00000162607 USP1 435366 sc-eQTL 7.15e-01 0.019 0.052 0.593 Pro_T L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 1.08e-01 0.141 0.0874 0.593 Pro_T L2
ENSG00000079739 PGM1 -721748 sc-eQTL 8.81e-01 0.0135 0.0897 0.594 Treg L2
ENSG00000088035 ALG6 -495912 sc-eQTL 8.43e-01 0.019 0.0959 0.594 Treg L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.83e-01 0.0243 0.088 0.594 Treg L2
ENSG00000125703 ATG4C 87531 sc-eQTL 8.20e-01 0.0205 0.0899 0.594 Treg L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 2.77e-01 0.102 0.0938 0.594 Treg L2
ENSG00000162607 USP1 435366 sc-eQTL 6.61e-01 -0.04 0.091 0.594 Treg L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 9.40e-01 0.00675 0.09 0.594 Treg L2
ENSG00000079739 PGM1 -721748 sc-eQTL 4.46e-01 -0.0674 0.0883 0.59 cDC L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.65e-02 -0.178 0.0887 0.59 cDC L2
ENSG00000116641 DOCK7 183277 sc-eQTL 4.12e-01 0.0721 0.0878 0.59 cDC L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.95e-01 -0.0521 0.0763 0.59 cDC L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 7.56e-01 0.0301 0.0968 0.59 cDC L2
ENSG00000162607 USP1 435366 sc-eQTL 6.88e-01 0.0346 0.0862 0.59 cDC L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 8.55e-01 0.0142 0.0778 0.59 cDC L2
ENSG00000079739 PGM1 -721748 sc-eQTL 1.99e-01 0.107 0.0828 0.594 cMono_IL1B L2
ENSG00000088035 ALG6 -495912 sc-eQTL 7.67e-02 -0.147 0.0826 0.594 cMono_IL1B L2
ENSG00000116641 DOCK7 183277 sc-eQTL 5.17e-01 0.057 0.0877 0.594 cMono_IL1B L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.02e-01 0.0517 0.0616 0.594 cMono_IL1B L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 5.13e-01 0.0572 0.0874 0.594 cMono_IL1B L2
ENSG00000162607 USP1 435366 sc-eQTL 5.46e-01 -0.0466 0.0771 0.594 cMono_IL1B L2
ENSG00000240563 L1TD1 676814 sc-eQTL 8.30e-01 -0.0167 0.0775 0.594 cMono_IL1B L2
ENSG00000079739 PGM1 -721748 sc-eQTL 4.40e-01 0.0711 0.0919 0.594 cMono_S100A L2
ENSG00000088035 ALG6 -495912 sc-eQTL 2.82e-01 -0.1 0.093 0.594 cMono_S100A L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.35e-01 0.0293 0.0864 0.594 cMono_S100A L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.71e-01 0.0539 0.0747 0.594 cMono_S100A L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.81e-01 0.0739 0.0843 0.594 cMono_S100A L2
ENSG00000162607 USP1 435366 sc-eQTL 6.22e-01 -0.0428 0.0868 0.594 cMono_S100A L2
ENSG00000240563 L1TD1 676814 sc-eQTL 5.60e-01 0.0422 0.0722 0.594 cMono_S100A L2
ENSG00000079739 PGM1 -721748 sc-eQTL 3.70e-01 -0.0952 0.106 0.594 gdT L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.58e-01 -0.0842 0.113 0.594 gdT L2
ENSG00000116641 DOCK7 183277 sc-eQTL 5.10e-01 0.0734 0.111 0.594 gdT L2
ENSG00000125703 ATG4C 87531 sc-eQTL 4.36e-01 -0.0827 0.106 0.594 gdT L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.91e-01 -0.0968 0.112 0.594 gdT L2
ENSG00000162607 USP1 435366 sc-eQTL 2.20e-01 -0.131 0.106 0.594 gdT L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 9.00e-01 -0.0139 0.111 0.594 gdT L2
ENSG00000079739 PGM1 -721748 sc-eQTL 5.38e-01 0.0563 0.0913 0.596 intMono L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.54e-01 0.0639 0.085 0.596 intMono L2
ENSG00000116641 DOCK7 183277 sc-eQTL 5.11e-01 0.0572 0.0869 0.596 intMono L2
ENSG00000125703 ATG4C 87531 sc-eQTL 8.58e-01 -0.0149 0.083 0.596 intMono L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 6.31e-01 0.0439 0.0914 0.596 intMono L2
ENSG00000162607 USP1 435366 sc-eQTL 5.22e-01 -0.0596 0.0929 0.596 intMono L2
ENSG00000240563 L1TD1 676814 sc-eQTL 4.09e-01 -0.0565 0.0683 0.596 intMono L2
ENSG00000079739 PGM1 -721748 sc-eQTL 7.67e-01 -0.0253 0.0852 0.6 ncMono L2
ENSG00000088035 ALG6 -495912 sc-eQTL 3.53e-01 0.0869 0.0934 0.6 ncMono L2
ENSG00000116641 DOCK7 183277 sc-eQTL 9.77e-01 -0.00261 0.0921 0.6 ncMono L2
ENSG00000125703 ATG4C 87531 sc-eQTL 3.17e-01 0.086 0.0859 0.6 ncMono L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.48e-01 0.0845 0.0898 0.6 ncMono L2
ENSG00000162607 USP1 435366 sc-eQTL 8.26e-01 -0.0202 0.092 0.6 ncMono L2
ENSG00000240563 L1TD1 676814 sc-eQTL 3.27e-01 -0.064 0.0651 0.6 ncMono L2
ENSG00000079739 PGM1 -721748 sc-eQTL 5.27e-01 -0.0643 0.101 0.593 pDC L2
ENSG00000088035 ALG6 -495912 sc-eQTL 4.35e-02 0.198 0.0975 0.593 pDC L2
ENSG00000116641 DOCK7 183277 sc-eQTL 7.12e-01 -0.0373 0.101 0.593 pDC L2
ENSG00000125703 ATG4C 87531 sc-eQTL 3.98e-01 0.0766 0.0903 0.593 pDC L2
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.27e-02 -0.176 0.101 0.593 pDC L2
ENSG00000162607 USP1 435366 sc-eQTL 2.39e-01 0.122 0.103 0.593 pDC L2
ENSG00000203965 EFCAB7 -651709 sc-eQTL 8.04e-01 -0.0224 0.0899 0.593 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -721748 sc-eQTL 5.88e-01 -0.0478 0.0881 0.594 B_Memory LOneK1K
ENSG00000088035 ALG6 -495912 sc-eQTL 2.61e-01 -0.11 0.0972 0.594 B_Memory LOneK1K
ENSG00000116641 DOCK7 183277 sc-eQTL 2.53e-01 0.0967 0.0844 0.594 B_Memory LOneK1K
ENSG00000125703 ATG4C 87531 sc-eQTL 4.76e-01 -0.0488 0.0683 0.594 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -722058 sc-eQTL 5.18e-01 -0.0581 0.0898 0.594 B_Memory LOneK1K
ENSG00000162607 USP1 435366 sc-eQTL 1.57e-01 0.123 0.0869 0.594 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -651709 sc-eQTL 2.28e-01 -0.113 0.0934 0.594 B_Memory LOneK1K
ENSG00000079739 PGM1 -721748 sc-eQTL 3.65e-01 0.0822 0.0905 0.594 B_Naive LOneK1K
ENSG00000088035 ALG6 -495912 sc-eQTL 4.08e-01 0.0773 0.0932 0.594 B_Naive LOneK1K
ENSG00000116641 DOCK7 183277 sc-eQTL 4.51e-01 -0.0657 0.0871 0.594 B_Naive LOneK1K
ENSG00000125703 ATG4C 87531 sc-eQTL 1.45e-02 0.162 0.0656 0.594 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.97e-01 -0.0798 0.0939 0.594 B_Naive LOneK1K
ENSG00000162607 USP1 435366 sc-eQTL 3.36e-01 -0.0778 0.0806 0.594 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -651709 sc-eQTL 2.16e-01 -0.117 0.0942 0.594 B_Naive LOneK1K
ENSG00000079739 PGM1 -721748 sc-eQTL 2.94e-01 0.089 0.0845 0.594 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -495912 sc-eQTL 6.10e-02 -0.153 0.0814 0.594 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 183277 sc-eQTL 4.91e-01 0.0569 0.0825 0.594 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 87531 sc-eQTL 1.95e-01 0.074 0.0569 0.594 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.40e-01 0.0807 0.0843 0.594 CD14_Mono LOneK1K
ENSG00000162607 USP1 435366 sc-eQTL 3.58e-01 -0.0664 0.072 0.594 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 676814 sc-eQTL 7.54e-01 0.0246 0.0782 0.594 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -721748 sc-eQTL 5.17e-01 0.0525 0.0807 0.595 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -495912 sc-eQTL 2.01e-01 0.117 0.0914 0.595 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 183277 sc-eQTL 8.19e-01 0.0208 0.0908 0.595 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 87531 sc-eQTL 6.76e-01 0.0324 0.0774 0.595 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -722058 sc-eQTL 3.20e-01 0.0894 0.0897 0.595 CD16_Mono LOneK1K
ENSG00000162607 USP1 435366 sc-eQTL 2.53e-01 -0.0965 0.0842 0.595 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 676814 sc-eQTL 1.10e-01 -0.0919 0.0572 0.595 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -721748 sc-eQTL 3.54e-01 0.0653 0.0702 0.593 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -495912 sc-eQTL 9.44e-01 0.00591 0.0845 0.593 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 183277 sc-eQTL 8.62e-03 0.197 0.0745 0.593 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 87531 sc-eQTL 9.55e-01 -0.00429 0.0756 0.593 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -722058 sc-eQTL 8.89e-01 0.0125 0.0896 0.593 NK_CD56dim LOneK1K
ENSG00000162607 USP1 435366 sc-eQTL 5.02e-01 -0.0547 0.0812 0.593 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -651709 sc-eQTL 5.06e-01 0.0659 0.0988 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 183295 eQTL 1.11e-10 0.141 0.0216 0.0 0.0 0.385
ENSG00000125703 ATG4C 87531 eQTL 5.54e-05 0.0673 0.0166 0.00157 0.00181 0.385
ENSG00000132855 ANGPTL3 274176 pQTL 0.00125 0.0943 0.0292 0.0 0.0 0.392
ENSG00000142856 ITGB3BP -722058 eQTL 0.00283 -0.0871 0.0291 0.0 0.0 0.385
ENSG00000162607 USP1 435366 eQTL 0.000752 0.0432 0.0128 0.0 0.0 0.385

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 183295 3.59e-06 3.14e-06 6.05e-07 1.97e-06 8.7e-07 8.07e-07 2.31e-06 1e-06 2.47e-06 1.43e-06 3e-06 1.86e-06 4.9e-06 1.41e-06 9.15e-07 1.99e-06 1.58e-06 2.12e-06 1.53e-06 1.2e-06 1.53e-06 3.37e-06 3.01e-06 1.8e-06 4.11e-06 1.23e-06 1.6e-06 1.74e-06 3.17e-06 2.49e-06 2.06e-06 4.73e-07 5.88e-07 1.68e-06 1.91e-06 9.53e-07 9.08e-07 4.65e-07 1.27e-06 3.63e-07 4.03e-07 4.11e-06 5.41e-07 1.95e-07 3.81e-07 3.64e-07 8.3e-07 2.23e-07 1.76e-07
ENSG00000125703 ATG4C 87531 7.03e-06 8.23e-06 1.3e-06 4e-06 2.16e-06 3.28e-06 9.6e-06 1.8e-06 6.19e-06 4.33e-06 9.18e-06 4.5e-06 1.15e-05 3.61e-06 1.83e-06 5.68e-06 3.68e-06 4.99e-06 2.66e-06 2.59e-06 4.51e-06 7.66e-06 6.55e-06 3.08e-06 1.15e-05 3.09e-06 4.22e-06 2.99e-06 7.5e-06 7.65e-06 4.13e-06 8.78e-07 1.22e-06 3e-06 3.49e-06 2.21e-06 1.71e-06 1.74e-06 2.01e-06 9.75e-07 9.41e-07 8.47e-06 1.09e-06 1.76e-07 7.53e-07 1.32e-06 1.19e-06 7.55e-07 4.89e-07
ENSG00000142856 ITGB3BP -722058 3.53e-07 1.7e-07 6.57e-08 2.24e-07 1.07e-07 8.4e-08 2.24e-07 5.84e-08 1.89e-07 1.05e-07 1.83e-07 1.52e-07 2.55e-07 8.44e-08 6.27e-08 9.48e-08 5.42e-08 2.04e-07 7.36e-08 6.16e-08 1.24e-07 1.76e-07 1.68e-07 4.17e-08 2.37e-07 1.56e-07 1.29e-07 1.28e-07 1.39e-07 1.33e-07 1.22e-07 4.61e-08 3.65e-08 1.02e-07 6.25e-08 3.18e-08 4.84e-08 7.68e-08 5.84e-08 6.67e-08 5.1e-08 1.59e-07 3.08e-08 7.51e-09 3.87e-08 6.83e-09 7.61e-08 2.1e-09 4.69e-08