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Genes within 1Mb (chr1:62870957:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -722454 sc-eQTL 4.14e-01 0.0635 0.0777 0.594 B L1
ENSG00000088035 ALG6 -496618 sc-eQTL 9.86e-01 -0.00142 0.0806 0.594 B L1
ENSG00000116641 DOCK7 182571 sc-eQTL 7.28e-01 -0.028 0.0806 0.594 B L1
ENSG00000125703 ATG4C 86825 sc-eQTL 2.97e-01 0.0584 0.0559 0.594 B L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 2.59e-01 -0.101 0.0889 0.594 B L1
ENSG00000162607 USP1 434660 sc-eQTL 9.25e-01 0.00733 0.0774 0.594 B L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.05e-01 -0.148 0.0908 0.594 B L1
ENSG00000079739 PGM1 -722454 sc-eQTL 9.61e-01 0.00328 0.0667 0.594 CD4T L1
ENSG00000088035 ALG6 -496618 sc-eQTL 7.98e-01 -0.0189 0.0736 0.594 CD4T L1
ENSG00000116641 DOCK7 182571 sc-eQTL 6.57e-01 0.0331 0.0745 0.594 CD4T L1
ENSG00000125703 ATG4C 86825 sc-eQTL 9.17e-01 0.00626 0.0602 0.594 CD4T L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 4.02e-01 0.0716 0.0853 0.594 CD4T L1
ENSG00000162607 USP1 434660 sc-eQTL 6.97e-01 0.0227 0.0583 0.594 CD4T L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 6.98e-02 0.139 0.0761 0.594 CD4T L1
ENSG00000079739 PGM1 -722454 sc-eQTL 7.59e-01 0.0227 0.0739 0.594 CD8T L1
ENSG00000088035 ALG6 -496618 sc-eQTL 6.95e-01 -0.032 0.0815 0.594 CD8T L1
ENSG00000116641 DOCK7 182571 sc-eQTL 8.24e-01 -0.0184 0.0826 0.594 CD8T L1
ENSG00000125703 ATG4C 86825 sc-eQTL 3.36e-02 0.166 0.0776 0.594 CD8T L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 7.32e-01 0.03 0.0877 0.594 CD8T L1
ENSG00000162607 USP1 434660 sc-eQTL 4.42e-01 -0.0525 0.0682 0.594 CD8T L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.95e-01 0.0744 0.0873 0.594 CD8T L1
ENSG00000079739 PGM1 -722454 sc-eQTL 4.90e-01 -0.0568 0.0821 0.592 DC L1
ENSG00000088035 ALG6 -496618 sc-eQTL 8.68e-01 0.0141 0.0848 0.592 DC L1
ENSG00000116641 DOCK7 182571 sc-eQTL 8.74e-01 0.0137 0.0869 0.592 DC L1
ENSG00000125703 ATG4C 86825 sc-eQTL 7.85e-01 -0.0186 0.068 0.592 DC L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.49e-01 -0.0182 0.0951 0.592 DC L1
ENSG00000162607 USP1 434660 sc-eQTL 6.48e-01 0.0379 0.083 0.592 DC L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 5.00e-01 -0.0558 0.0827 0.592 DC L1
ENSG00000079739 PGM1 -722454 sc-eQTL 3.09e-01 0.0818 0.0802 0.594 Mono L1
ENSG00000088035 ALG6 -496618 sc-eQTL 1.22e-01 -0.13 0.0834 0.594 Mono L1
ENSG00000116641 DOCK7 182571 sc-eQTL 3.43e-01 0.0769 0.0809 0.594 Mono L1
ENSG00000125703 ATG4C 86825 sc-eQTL 1.82e-01 0.0731 0.0546 0.594 Mono L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 4.71e-01 0.0625 0.0865 0.594 Mono L1
ENSG00000162607 USP1 434660 sc-eQTL 3.90e-01 -0.0611 0.071 0.594 Mono L1
ENSG00000240563 L1TD1 676108 sc-eQTL 5.07e-01 -0.0441 0.0663 0.594 Mono L1
ENSG00000079739 PGM1 -722454 sc-eQTL 3.19e-01 0.069 0.0691 0.594 NK L1
ENSG00000088035 ALG6 -496618 sc-eQTL 8.88e-01 -0.0115 0.0812 0.594 NK L1
ENSG00000116641 DOCK7 182571 sc-eQTL 5.53e-02 0.128 0.0663 0.594 NK L1
ENSG00000125703 ATG4C 86825 sc-eQTL 8.79e-01 -0.0109 0.0718 0.594 NK L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.91e-01 0.0123 0.0893 0.594 NK L1
ENSG00000162607 USP1 434660 sc-eQTL 8.06e-01 -0.0196 0.0798 0.594 NK L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 9.35e-01 -0.0079 0.0969 0.594 NK L1
ENSG00000079739 PGM1 -722454 sc-eQTL 3.20e-01 -0.0779 0.0781 0.594 Other_T L1
ENSG00000088035 ALG6 -496618 sc-eQTL 2.30e-01 0.0943 0.0783 0.594 Other_T L1
ENSG00000116641 DOCK7 182571 sc-eQTL 9.29e-01 0.00721 0.0802 0.594 Other_T L1
ENSG00000125703 ATG4C 86825 sc-eQTL 2.07e-03 0.212 0.0679 0.594 Other_T L1
ENSG00000142856 ITGB3BP -722764 sc-eQTL 2.76e-01 -0.0671 0.0614 0.594 Other_T L1
ENSG00000162607 USP1 434660 sc-eQTL 8.07e-01 -0.0131 0.0534 0.594 Other_T L1
ENSG00000203965 EFCAB7 -652415 sc-eQTL 2.83e-01 0.102 0.0948 0.594 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -722454 sc-eQTL 5.85e-01 -0.0589 0.108 0.592 B_Activated L2
ENSG00000088035 ALG6 -496618 sc-eQTL 3.90e-01 -0.0886 0.103 0.592 B_Activated L2
ENSG00000116641 DOCK7 182571 sc-eQTL 8.41e-01 0.0193 0.096 0.592 B_Activated L2
ENSG00000125703 ATG4C 86825 sc-eQTL 5.45e-01 -0.0611 0.101 0.592 B_Activated L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.04e-02 -0.172 0.0978 0.592 B_Activated L2
ENSG00000162607 USP1 434660 sc-eQTL 9.25e-01 -0.0101 0.107 0.592 B_Activated L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 6.75e-01 0.0392 0.0933 0.592 B_Activated L2
ENSG00000079739 PGM1 -722454 sc-eQTL 6.75e-01 -0.04 0.0952 0.594 B_Intermediate L2
ENSG00000088035 ALG6 -496618 sc-eQTL 6.56e-01 -0.0431 0.0967 0.594 B_Intermediate L2
ENSG00000116641 DOCK7 182571 sc-eQTL 5.26e-01 0.0586 0.0923 0.594 B_Intermediate L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.83e-01 -0.032 0.0782 0.594 B_Intermediate L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.96e-01 0.0122 0.0932 0.594 B_Intermediate L2
ENSG00000162607 USP1 434660 sc-eQTL 5.16e-01 0.0605 0.0929 0.594 B_Intermediate L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.02e-01 -0.151 0.0917 0.594 B_Intermediate L2
ENSG00000079739 PGM1 -722454 sc-eQTL 7.90e-01 -0.0247 0.0928 0.593 B_Memory L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.20e-01 -0.0761 0.0943 0.593 B_Memory L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.29e-01 0.0307 0.0885 0.593 B_Memory L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.07e-01 -0.0433 0.0841 0.593 B_Memory L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 9.09e-01 -0.011 0.0963 0.593 B_Memory L2
ENSG00000162607 USP1 434660 sc-eQTL 2.36e-01 0.115 0.0968 0.593 B_Memory L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 7.59e-01 -0.0293 0.0956 0.593 B_Memory L2
ENSG00000079739 PGM1 -722454 sc-eQTL 6.19e-01 0.0465 0.0934 0.594 B_Naive1 L2
ENSG00000088035 ALG6 -496618 sc-eQTL 2.39e-01 0.11 0.0935 0.594 B_Naive1 L2
ENSG00000116641 DOCK7 182571 sc-eQTL 2.08e-01 -0.113 0.0895 0.594 B_Naive1 L2
ENSG00000125703 ATG4C 86825 sc-eQTL 3.29e-02 0.147 0.0685 0.594 B_Naive1 L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.78e-01 -0.081 0.0917 0.594 B_Naive1 L2
ENSG00000162607 USP1 434660 sc-eQTL 1.45e-01 -0.118 0.0803 0.594 B_Naive1 L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.54e-01 -0.14 0.0975 0.594 B_Naive1 L2
ENSG00000079739 PGM1 -722454 sc-eQTL 2.82e-01 0.0995 0.0923 0.594 B_Naive2 L2
ENSG00000088035 ALG6 -496618 sc-eQTL 3.95e-01 -0.0821 0.0963 0.594 B_Naive2 L2
ENSG00000116641 DOCK7 182571 sc-eQTL 8.75e-01 0.0147 0.0928 0.594 B_Naive2 L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.67e-01 0.0385 0.0893 0.594 B_Naive2 L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 9.65e-01 -0.00421 0.0969 0.594 B_Naive2 L2
ENSG00000162607 USP1 434660 sc-eQTL 8.81e-01 0.0138 0.0922 0.594 B_Naive2 L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 6.84e-01 -0.0393 0.0964 0.594 B_Naive2 L2
ENSG00000079739 PGM1 -722454 sc-eQTL 6.06e-02 -0.174 0.0921 0.589 CD4_CTL L2
ENSG00000088035 ALG6 -496618 sc-eQTL 6.00e-01 0.0515 0.0982 0.589 CD4_CTL L2
ENSG00000116641 DOCK7 182571 sc-eQTL 1.25e-01 0.132 0.0854 0.589 CD4_CTL L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.55e-01 0.0398 0.0888 0.589 CD4_CTL L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 9.64e-02 0.158 0.0944 0.589 CD4_CTL L2
ENSG00000162607 USP1 434660 sc-eQTL 9.39e-01 -0.00694 0.0904 0.589 CD4_CTL L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.02e-01 -0.0932 0.09 0.589 CD4_CTL L2
ENSG00000079739 PGM1 -722454 sc-eQTL 5.68e-01 0.0428 0.0747 0.594 CD4_Naive L2
ENSG00000088035 ALG6 -496618 sc-eQTL 6.88e-01 0.0326 0.0812 0.594 CD4_Naive L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.52e-01 -0.0252 0.0798 0.594 CD4_Naive L2
ENSG00000125703 ATG4C 86825 sc-eQTL 8.41e-01 -0.0142 0.0705 0.594 CD4_Naive L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 9.90e-01 0.00105 0.0862 0.594 CD4_Naive L2
ENSG00000162607 USP1 434660 sc-eQTL 4.75e-01 0.0471 0.0658 0.594 CD4_Naive L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 8.44e-03 0.224 0.0842 0.594 CD4_Naive L2
ENSG00000079739 PGM1 -722454 sc-eQTL 9.35e-01 -0.00638 0.0781 0.594 CD4_TCM L2
ENSG00000088035 ALG6 -496618 sc-eQTL 1.05e-01 -0.147 0.0902 0.594 CD4_TCM L2
ENSG00000116641 DOCK7 182571 sc-eQTL 9.52e-01 -0.00487 0.0804 0.594 CD4_TCM L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.11e-01 0.0398 0.0782 0.594 CD4_TCM L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 2.62e-01 0.103 0.092 0.594 CD4_TCM L2
ENSG00000162607 USP1 434660 sc-eQTL 9.82e-01 0.00166 0.0757 0.594 CD4_TCM L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.90e-01 0.0769 0.0892 0.594 CD4_TCM L2
ENSG00000079739 PGM1 -722454 sc-eQTL 9.58e-01 -0.00488 0.0921 0.594 CD4_TEM L2
ENSG00000088035 ALG6 -496618 sc-eQTL 3.44e-01 -0.0877 0.0924 0.594 CD4_TEM L2
ENSG00000116641 DOCK7 182571 sc-eQTL 9.71e-01 -0.00329 0.0903 0.594 CD4_TEM L2
ENSG00000125703 ATG4C 86825 sc-eQTL 8.80e-01 0.0132 0.0877 0.594 CD4_TEM L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 6.39e-01 0.0425 0.0904 0.594 CD4_TEM L2
ENSG00000162607 USP1 434660 sc-eQTL 5.42e-01 0.0524 0.0856 0.594 CD4_TEM L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.28e-01 -0.143 0.0932 0.594 CD4_TEM L2
ENSG00000079739 PGM1 -722454 sc-eQTL 1.57e-01 0.12 0.0843 0.594 CD8_CTL L2
ENSG00000088035 ALG6 -496618 sc-eQTL 3.73e-01 -0.0802 0.0898 0.594 CD8_CTL L2
ENSG00000116641 DOCK7 182571 sc-eQTL 3.42e-01 0.0813 0.0852 0.594 CD8_CTL L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.13e-02 0.185 0.09 0.594 CD8_CTL L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.29e-01 -0.0204 0.0945 0.594 CD8_CTL L2
ENSG00000162607 USP1 434660 sc-eQTL 8.06e-01 0.0208 0.0847 0.594 CD8_CTL L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 2.09e-01 0.122 0.0965 0.594 CD8_CTL L2
ENSG00000079739 PGM1 -722454 sc-eQTL 6.27e-01 0.0418 0.0857 0.594 CD8_Naive L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.74e-01 -0.0636 0.0887 0.594 CD8_Naive L2
ENSG00000116641 DOCK7 182571 sc-eQTL 6.39e-02 -0.17 0.0911 0.594 CD8_Naive L2
ENSG00000125703 ATG4C 86825 sc-eQTL 1.16e-01 0.138 0.0876 0.594 CD8_Naive L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.32e-01 0.0189 0.0892 0.594 CD8_Naive L2
ENSG00000162607 USP1 434660 sc-eQTL 7.82e-01 -0.0209 0.0754 0.594 CD8_Naive L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 5.22e-01 0.054 0.0841 0.594 CD8_Naive L2
ENSG00000079739 PGM1 -722454 sc-eQTL 3.63e-03 -0.273 0.0928 0.59 CD8_TCM L2
ENSG00000088035 ALG6 -496618 sc-eQTL 6.61e-02 0.176 0.0952 0.59 CD8_TCM L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.27e-01 0.0328 0.0937 0.59 CD8_TCM L2
ENSG00000125703 ATG4C 86825 sc-eQTL 7.71e-01 -0.0279 0.0958 0.59 CD8_TCM L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 4.87e-01 0.0648 0.093 0.59 CD8_TCM L2
ENSG00000162607 USP1 434660 sc-eQTL 8.88e-01 -0.0127 0.0896 0.59 CD8_TCM L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.50e-03 0.274 0.0928 0.59 CD8_TCM L2
ENSG00000079739 PGM1 -722454 sc-eQTL 4.27e-01 0.0784 0.0984 0.603 CD8_TEM L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.76e-02 0.195 0.098 0.603 CD8_TEM L2
ENSG00000116641 DOCK7 182571 sc-eQTL 9.48e-01 0.00622 0.0959 0.603 CD8_TEM L2
ENSG00000125703 ATG4C 86825 sc-eQTL 7.85e-02 0.162 0.0915 0.603 CD8_TEM L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 6.07e-01 0.0514 0.0998 0.603 CD8_TEM L2
ENSG00000162607 USP1 434660 sc-eQTL 2.45e-01 -0.111 0.0949 0.603 CD8_TEM L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 8.44e-01 -0.0191 0.0968 0.603 CD8_TEM L2
ENSG00000079739 PGM1 -722454 sc-eQTL 1.35e-01 -0.133 0.0888 0.593 MAIT L2
ENSG00000088035 ALG6 -496618 sc-eQTL 9.56e-01 0.00491 0.0884 0.593 MAIT L2
ENSG00000116641 DOCK7 182571 sc-eQTL 6.80e-01 -0.035 0.0847 0.593 MAIT L2
ENSG00000125703 ATG4C 86825 sc-eQTL 1.23e-02 0.222 0.088 0.593 MAIT L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 6.72e-01 -0.0379 0.0894 0.593 MAIT L2
ENSG00000162607 USP1 434660 sc-eQTL 6.22e-01 0.0438 0.0887 0.593 MAIT L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 2.81e-01 0.0994 0.0919 0.593 MAIT L2
ENSG00000079739 PGM1 -722454 sc-eQTL 7.93e-01 -0.0239 0.0908 0.591 NK_CD56bright L2
ENSG00000088035 ALG6 -496618 sc-eQTL 9.07e-01 -0.0109 0.0931 0.591 NK_CD56bright L2
ENSG00000116641 DOCK7 182571 sc-eQTL 4.94e-02 -0.158 0.0799 0.591 NK_CD56bright L2
ENSG00000125703 ATG4C 86825 sc-eQTL 1.27e-01 -0.137 0.0896 0.591 NK_CD56bright L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 9.16e-01 0.00994 0.0938 0.591 NK_CD56bright L2
ENSG00000162607 USP1 434660 sc-eQTL 5.71e-01 0.0549 0.0967 0.591 NK_CD56bright L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.41e-01 -0.136 0.0921 0.591 NK_CD56bright L2
ENSG00000079739 PGM1 -722454 sc-eQTL 4.94e-01 -0.0492 0.0718 0.593 NK_CD56dim L2
ENSG00000088035 ALG6 -496618 sc-eQTL 6.24e-01 -0.0447 0.0912 0.593 NK_CD56dim L2
ENSG00000116641 DOCK7 182571 sc-eQTL 1.07e-01 0.128 0.0789 0.593 NK_CD56dim L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.62e-01 -0.0353 0.0806 0.593 NK_CD56dim L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.53e-01 -0.017 0.0917 0.593 NK_CD56dim L2
ENSG00000162607 USP1 434660 sc-eQTL 8.99e-01 -0.0113 0.089 0.593 NK_CD56dim L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 8.01e-01 0.025 0.0991 0.593 NK_CD56dim L2
ENSG00000079739 PGM1 -722454 sc-eQTL 2.40e-01 0.113 0.0962 0.598 NK_HLA L2
ENSG00000088035 ALG6 -496618 sc-eQTL 2.78e-01 -0.109 0.0998 0.598 NK_HLA L2
ENSG00000116641 DOCK7 182571 sc-eQTL 4.30e-01 0.0605 0.0765 0.598 NK_HLA L2
ENSG00000125703 ATG4C 86825 sc-eQTL 1.25e-01 0.136 0.0885 0.598 NK_HLA L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.14e-01 0.0221 0.0935 0.598 NK_HLA L2
ENSG00000162607 USP1 434660 sc-eQTL 9.45e-01 0.00673 0.0979 0.598 NK_HLA L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.09e-01 0.0905 0.0888 0.598 NK_HLA L2
ENSG00000079739 PGM1 -722454 sc-eQTL 1.64e-01 0.109 0.0777 0.593 NK_cytokine L2
ENSG00000088035 ALG6 -496618 sc-eQTL 8.24e-02 0.153 0.0875 0.593 NK_cytokine L2
ENSG00000116641 DOCK7 182571 sc-eQTL 5.87e-02 0.154 0.081 0.593 NK_cytokine L2
ENSG00000125703 ATG4C 86825 sc-eQTL 7.10e-01 0.0311 0.0835 0.593 NK_cytokine L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.15e-01 -0.0202 0.0865 0.593 NK_cytokine L2
ENSG00000162607 USP1 434660 sc-eQTL 6.74e-01 -0.0384 0.091 0.593 NK_cytokine L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 3.83e-01 0.0805 0.092 0.593 NK_cytokine L2
ENSG00000079739 PGM1 -722454 sc-eQTL 6.88e-01 0.0419 0.104 0.596 PB L2
ENSG00000088035 ALG6 -496618 sc-eQTL 8.15e-01 -0.0257 0.109 0.596 PB L2
ENSG00000116641 DOCK7 182571 sc-eQTL 8.57e-01 -0.0212 0.117 0.596 PB L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.63e-01 0.075 0.102 0.596 PB L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 7.89e-01 -0.0273 0.102 0.596 PB L2
ENSG00000162607 USP1 434660 sc-eQTL 8.09e-01 0.0245 0.101 0.596 PB L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 5.98e-01 0.0591 0.112 0.596 PB L2
ENSG00000079739 PGM1 -722454 sc-eQTL 7.46e-01 0.0274 0.0844 0.593 Pro_T L2
ENSG00000088035 ALG6 -496618 sc-eQTL 7.28e-01 0.0299 0.0859 0.593 Pro_T L2
ENSG00000116641 DOCK7 182571 sc-eQTL 2.24e-01 0.105 0.0859 0.593 Pro_T L2
ENSG00000125703 ATG4C 86825 sc-eQTL 6.12e-01 0.0384 0.0754 0.593 Pro_T L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.34e-02 -0.16 0.0749 0.593 Pro_T L2
ENSG00000162607 USP1 434660 sc-eQTL 7.15e-01 0.019 0.052 0.593 Pro_T L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 1.08e-01 0.141 0.0874 0.593 Pro_T L2
ENSG00000079739 PGM1 -722454 sc-eQTL 8.81e-01 0.0135 0.0897 0.594 Treg L2
ENSG00000088035 ALG6 -496618 sc-eQTL 8.43e-01 0.019 0.0959 0.594 Treg L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.83e-01 0.0243 0.088 0.594 Treg L2
ENSG00000125703 ATG4C 86825 sc-eQTL 8.20e-01 0.0205 0.0899 0.594 Treg L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 2.77e-01 0.102 0.0938 0.594 Treg L2
ENSG00000162607 USP1 434660 sc-eQTL 6.61e-01 -0.04 0.091 0.594 Treg L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 9.40e-01 0.00675 0.09 0.594 Treg L2
ENSG00000079739 PGM1 -722454 sc-eQTL 4.46e-01 -0.0674 0.0883 0.59 cDC L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.65e-02 -0.178 0.0887 0.59 cDC L2
ENSG00000116641 DOCK7 182571 sc-eQTL 4.12e-01 0.0721 0.0878 0.59 cDC L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.95e-01 -0.0521 0.0763 0.59 cDC L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 7.56e-01 0.0301 0.0968 0.59 cDC L2
ENSG00000162607 USP1 434660 sc-eQTL 6.88e-01 0.0346 0.0862 0.59 cDC L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 8.55e-01 0.0142 0.0778 0.59 cDC L2
ENSG00000079739 PGM1 -722454 sc-eQTL 1.99e-01 0.107 0.0828 0.594 cMono_IL1B L2
ENSG00000088035 ALG6 -496618 sc-eQTL 7.67e-02 -0.147 0.0826 0.594 cMono_IL1B L2
ENSG00000116641 DOCK7 182571 sc-eQTL 5.17e-01 0.057 0.0877 0.594 cMono_IL1B L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.02e-01 0.0517 0.0616 0.594 cMono_IL1B L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 5.13e-01 0.0572 0.0874 0.594 cMono_IL1B L2
ENSG00000162607 USP1 434660 sc-eQTL 5.46e-01 -0.0466 0.0771 0.594 cMono_IL1B L2
ENSG00000240563 L1TD1 676108 sc-eQTL 8.30e-01 -0.0167 0.0775 0.594 cMono_IL1B L2
ENSG00000079739 PGM1 -722454 sc-eQTL 4.40e-01 0.0711 0.0919 0.594 cMono_S100A L2
ENSG00000088035 ALG6 -496618 sc-eQTL 2.82e-01 -0.1 0.093 0.594 cMono_S100A L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.35e-01 0.0293 0.0864 0.594 cMono_S100A L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.71e-01 0.0539 0.0747 0.594 cMono_S100A L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.81e-01 0.0739 0.0843 0.594 cMono_S100A L2
ENSG00000162607 USP1 434660 sc-eQTL 6.22e-01 -0.0428 0.0868 0.594 cMono_S100A L2
ENSG00000240563 L1TD1 676108 sc-eQTL 5.60e-01 0.0422 0.0722 0.594 cMono_S100A L2
ENSG00000079739 PGM1 -722454 sc-eQTL 3.70e-01 -0.0952 0.106 0.594 gdT L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.58e-01 -0.0842 0.113 0.594 gdT L2
ENSG00000116641 DOCK7 182571 sc-eQTL 5.10e-01 0.0734 0.111 0.594 gdT L2
ENSG00000125703 ATG4C 86825 sc-eQTL 4.36e-01 -0.0827 0.106 0.594 gdT L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.91e-01 -0.0968 0.112 0.594 gdT L2
ENSG00000162607 USP1 434660 sc-eQTL 2.20e-01 -0.131 0.106 0.594 gdT L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 9.00e-01 -0.0139 0.111 0.594 gdT L2
ENSG00000079739 PGM1 -722454 sc-eQTL 5.38e-01 0.0563 0.0913 0.596 intMono L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.54e-01 0.0639 0.085 0.596 intMono L2
ENSG00000116641 DOCK7 182571 sc-eQTL 5.11e-01 0.0572 0.0869 0.596 intMono L2
ENSG00000125703 ATG4C 86825 sc-eQTL 8.58e-01 -0.0149 0.083 0.596 intMono L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 6.31e-01 0.0439 0.0914 0.596 intMono L2
ENSG00000162607 USP1 434660 sc-eQTL 5.22e-01 -0.0596 0.0929 0.596 intMono L2
ENSG00000240563 L1TD1 676108 sc-eQTL 4.09e-01 -0.0565 0.0683 0.596 intMono L2
ENSG00000079739 PGM1 -722454 sc-eQTL 7.67e-01 -0.0253 0.0852 0.6 ncMono L2
ENSG00000088035 ALG6 -496618 sc-eQTL 3.53e-01 0.0869 0.0934 0.6 ncMono L2
ENSG00000116641 DOCK7 182571 sc-eQTL 9.77e-01 -0.00261 0.0921 0.6 ncMono L2
ENSG00000125703 ATG4C 86825 sc-eQTL 3.17e-01 0.086 0.0859 0.6 ncMono L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.48e-01 0.0845 0.0898 0.6 ncMono L2
ENSG00000162607 USP1 434660 sc-eQTL 8.26e-01 -0.0202 0.092 0.6 ncMono L2
ENSG00000240563 L1TD1 676108 sc-eQTL 3.27e-01 -0.064 0.0651 0.6 ncMono L2
ENSG00000079739 PGM1 -722454 sc-eQTL 5.27e-01 -0.0643 0.101 0.593 pDC L2
ENSG00000088035 ALG6 -496618 sc-eQTL 4.35e-02 0.198 0.0975 0.593 pDC L2
ENSG00000116641 DOCK7 182571 sc-eQTL 7.12e-01 -0.0373 0.101 0.593 pDC L2
ENSG00000125703 ATG4C 86825 sc-eQTL 3.98e-01 0.0766 0.0903 0.593 pDC L2
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.27e-02 -0.176 0.101 0.593 pDC L2
ENSG00000162607 USP1 434660 sc-eQTL 2.39e-01 0.122 0.103 0.593 pDC L2
ENSG00000203965 EFCAB7 -652415 sc-eQTL 8.04e-01 -0.0224 0.0899 0.593 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -722454 sc-eQTL 5.88e-01 -0.0478 0.0881 0.594 B_Memory LOneK1K
ENSG00000088035 ALG6 -496618 sc-eQTL 2.61e-01 -0.11 0.0972 0.594 B_Memory LOneK1K
ENSG00000116641 DOCK7 182571 sc-eQTL 2.53e-01 0.0967 0.0844 0.594 B_Memory LOneK1K
ENSG00000125703 ATG4C 86825 sc-eQTL 4.76e-01 -0.0488 0.0683 0.594 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -722764 sc-eQTL 5.18e-01 -0.0581 0.0898 0.594 B_Memory LOneK1K
ENSG00000162607 USP1 434660 sc-eQTL 1.57e-01 0.123 0.0869 0.594 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -652415 sc-eQTL 2.28e-01 -0.113 0.0934 0.594 B_Memory LOneK1K
ENSG00000079739 PGM1 -722454 sc-eQTL 3.65e-01 0.0822 0.0905 0.594 B_Naive LOneK1K
ENSG00000088035 ALG6 -496618 sc-eQTL 4.08e-01 0.0773 0.0932 0.594 B_Naive LOneK1K
ENSG00000116641 DOCK7 182571 sc-eQTL 4.51e-01 -0.0657 0.0871 0.594 B_Naive LOneK1K
ENSG00000125703 ATG4C 86825 sc-eQTL 1.45e-02 0.162 0.0656 0.594 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.97e-01 -0.0798 0.0939 0.594 B_Naive LOneK1K
ENSG00000162607 USP1 434660 sc-eQTL 3.36e-01 -0.0778 0.0806 0.594 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -652415 sc-eQTL 2.16e-01 -0.117 0.0942 0.594 B_Naive LOneK1K
ENSG00000079739 PGM1 -722454 sc-eQTL 2.94e-01 0.089 0.0845 0.594 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -496618 sc-eQTL 6.10e-02 -0.153 0.0814 0.594 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 182571 sc-eQTL 4.91e-01 0.0569 0.0825 0.594 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 86825 sc-eQTL 1.95e-01 0.074 0.0569 0.594 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.40e-01 0.0807 0.0843 0.594 CD14_Mono LOneK1K
ENSG00000162607 USP1 434660 sc-eQTL 3.58e-01 -0.0664 0.072 0.594 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 676108 sc-eQTL 7.54e-01 0.0246 0.0782 0.594 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -722454 sc-eQTL 5.17e-01 0.0525 0.0807 0.595 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -496618 sc-eQTL 2.01e-01 0.117 0.0914 0.595 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 182571 sc-eQTL 8.19e-01 0.0208 0.0908 0.595 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 86825 sc-eQTL 6.76e-01 0.0324 0.0774 0.595 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -722764 sc-eQTL 3.20e-01 0.0894 0.0897 0.595 CD16_Mono LOneK1K
ENSG00000162607 USP1 434660 sc-eQTL 2.53e-01 -0.0965 0.0842 0.595 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 676108 sc-eQTL 1.10e-01 -0.0919 0.0572 0.595 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -722454 sc-eQTL 3.54e-01 0.0653 0.0702 0.593 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -496618 sc-eQTL 9.44e-01 0.00591 0.0845 0.593 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 182571 sc-eQTL 8.62e-03 0.197 0.0745 0.593 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 86825 sc-eQTL 9.55e-01 -0.00429 0.0756 0.593 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -722764 sc-eQTL 8.89e-01 0.0125 0.0896 0.593 NK_CD56dim LOneK1K
ENSG00000162607 USP1 434660 sc-eQTL 5.02e-01 -0.0547 0.0812 0.593 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -652415 sc-eQTL 5.06e-01 0.0659 0.0988 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 182589 eQTL 1.23e-10 0.141 0.0216 0.0 0.0 0.383
ENSG00000125703 ATG4C 86825 eQTL 5.35e-05 0.0675 0.0166 0.00161 0.00187 0.383
ENSG00000132855 ANGPTL3 273470 pQTL 0.0018 0.0912 0.0292 0.0 0.0 0.391
ENSG00000142856 ITGB3BP -722764 eQTL 0.00159 -0.0921 0.0291 0.0 0.0 0.383
ENSG00000162607 USP1 434660 eQTL 0.00094 0.0424 0.0128 0.0 0.0 0.383

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 182589 5.08e-06 5.64e-06 6.54e-07 3.37e-06 1.62e-06 1.56e-06 6.29e-06 1.1e-06 5e-06 2.76e-06 6.72e-06 3.12e-06 8.72e-06 1.75e-06 1.12e-06 3.99e-06 2.24e-06 3.95e-06 1.47e-06 1.51e-06 2.6e-06 5.09e-06 4.42e-06 1.76e-06 8.52e-06 1.94e-06 2.3e-06 1.76e-06 4.79e-06 4.87e-06 2.62e-06 5.55e-07 7.36e-07 2.33e-06 2.07e-06 1.12e-06 1.04e-06 5.46e-07 1.2e-06 7.33e-07 7.35e-07 7.2e-06 7.18e-07 1.5e-07 6.37e-07 1.07e-06 1.06e-06 6.81e-07 4.23e-07
ENSG00000125703 ATG4C 86825 1.2e-05 1.29e-05 2.57e-06 8.21e-06 2.33e-06 6.16e-06 1.53e-05 2.14e-06 1.22e-05 6.24e-06 1.6e-05 6.79e-06 2.18e-05 4.75e-06 3.97e-06 8.42e-06 7.09e-06 1.06e-05 3.52e-06 3.53e-06 6.48e-06 1.2e-05 1.12e-05 4.11e-06 2.18e-05 4.65e-06 7.12e-06 5.86e-06 1.42e-05 1.15e-05 8.2e-06 1.01e-06 1.33e-06 4.07e-06 5.84e-06 2.85e-06 1.71e-06 2.18e-06 2.73e-06 1.92e-06 1.14e-06 1.63e-05 2.22e-06 2.85e-07 9.99e-07 2.35e-06 2.02e-06 8.65e-07 4.56e-07
ENSG00000142856 ITGB3BP -722764 7.3e-07 4.78e-07 1.12e-07 3.87e-07 1.07e-07 2.08e-07 5.01e-07 9.26e-08 3.62e-07 2.16e-07 5.29e-07 3.3e-07 7.19e-07 1.1e-07 1.57e-07 1.96e-07 2.07e-07 3.58e-07 1.81e-07 1.43e-07 1.91e-07 2.96e-07 3.02e-07 1.23e-07 6.87e-07 2.36e-07 2.43e-07 2.59e-07 2.78e-07 4.3e-07 2.6e-07 6.37e-08 5.77e-08 1.56e-07 3.05e-07 8.32e-08 1.01e-07 9.46e-08 6.49e-08 2.28e-08 8.29e-08 4.04e-07 2.47e-08 5.54e-09 1.01e-07 1.35e-08 8.24e-08 1.79e-08 5.15e-08