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Genes within 1Mb (chr1:62844156:T:TG):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -749255 sc-eQTL 3.41e-01 0.0764 0.0801 0.613 B L1
ENSG00000088035 ALG6 -523419 sc-eQTL 8.34e-01 -0.0174 0.0831 0.613 B L1
ENSG00000116641 DOCK7 155770 sc-eQTL 8.29e-01 -0.0179 0.0831 0.613 B L1
ENSG00000125703 ATG4C 60024 sc-eQTL 2.47e-01 0.0669 0.0576 0.613 B L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 1.88e-01 -0.121 0.0916 0.613 B L1
ENSG00000162607 USP1 407859 sc-eQTL 7.97e-01 -0.0205 0.0798 0.613 B L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 1.49e-01 -0.136 0.0937 0.613 B L1
ENSG00000079739 PGM1 -749255 sc-eQTL 8.81e-01 0.0103 0.0688 0.613 CD4T L1
ENSG00000088035 ALG6 -523419 sc-eQTL 9.34e-01 -0.00625 0.0759 0.613 CD4T L1
ENSG00000116641 DOCK7 155770 sc-eQTL 6.09e-01 0.0394 0.0768 0.613 CD4T L1
ENSG00000125703 ATG4C 60024 sc-eQTL 7.31e-01 0.0214 0.062 0.613 CD4T L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 5.37e-01 0.0544 0.088 0.613 CD4T L1
ENSG00000162607 USP1 407859 sc-eQTL 8.08e-01 0.0147 0.0602 0.613 CD4T L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 5.59e-02 0.151 0.0784 0.613 CD4T L1
ENSG00000079739 PGM1 -749255 sc-eQTL 7.27e-01 0.0267 0.0764 0.613 CD8T L1
ENSG00000088035 ALG6 -523419 sc-eQTL 6.10e-01 -0.043 0.0842 0.613 CD8T L1
ENSG00000116641 DOCK7 155770 sc-eQTL 9.47e-01 0.00567 0.0853 0.613 CD8T L1
ENSG00000125703 ATG4C 60024 sc-eQTL 1.24e-02 0.201 0.0798 0.613 CD8T L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 7.90e-01 0.0242 0.0906 0.613 CD8T L1
ENSG00000162607 USP1 407859 sc-eQTL 5.95e-01 -0.0376 0.0706 0.613 CD8T L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.67e-01 0.0658 0.0902 0.613 CD8T L1
ENSG00000079739 PGM1 -749255 sc-eQTL 5.78e-01 -0.0483 0.0867 0.615 DC L1
ENSG00000088035 ALG6 -523419 sc-eQTL 9.73e-01 -0.00302 0.0896 0.615 DC L1
ENSG00000116641 DOCK7 155770 sc-eQTL 9.24e-01 0.00877 0.0918 0.615 DC L1
ENSG00000125703 ATG4C 60024 sc-eQTL 7.67e-01 -0.0213 0.0718 0.615 DC L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.98e-01 0.000273 0.1 0.615 DC L1
ENSG00000162607 USP1 407859 sc-eQTL 7.21e-01 0.0313 0.0876 0.615 DC L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.34e-01 -0.0684 0.0873 0.615 DC L1
ENSG00000079739 PGM1 -749255 sc-eQTL 4.82e-01 0.0583 0.0828 0.613 Mono L1
ENSG00000088035 ALG6 -523419 sc-eQTL 9.71e-02 -0.143 0.0859 0.613 Mono L1
ENSG00000116641 DOCK7 155770 sc-eQTL 3.36e-01 0.0805 0.0835 0.613 Mono L1
ENSG00000125703 ATG4C 60024 sc-eQTL 2.19e-01 0.0694 0.0563 0.613 Mono L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.90e-01 0.0768 0.0892 0.613 Mono L1
ENSG00000162607 USP1 407859 sc-eQTL 5.35e-01 -0.0456 0.0733 0.613 Mono L1
ENSG00000240563 L1TD1 649307 sc-eQTL 2.41e-01 -0.0803 0.0682 0.613 Mono L1
ENSG00000079739 PGM1 -749255 sc-eQTL 3.99e-01 0.0609 0.0722 0.616 NK L1
ENSG00000088035 ALG6 -523419 sc-eQTL 7.74e-01 -0.0244 0.0847 0.616 NK L1
ENSG00000116641 DOCK7 155770 sc-eQTL 7.99e-02 0.122 0.0693 0.616 NK L1
ENSG00000125703 ATG4C 60024 sc-eQTL 8.24e-01 0.0167 0.075 0.616 NK L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.83e-01 -0.00196 0.0932 0.616 NK L1
ENSG00000162607 USP1 407859 sc-eQTL 9.77e-01 0.00237 0.0833 0.616 NK L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 7.31e-01 -0.0348 0.101 0.616 NK L1
ENSG00000079739 PGM1 -749255 sc-eQTL 2.65e-01 -0.0896 0.0801 0.613 Other_T L1
ENSG00000088035 ALG6 -523419 sc-eQTL 2.47e-01 0.0935 0.0805 0.613 Other_T L1
ENSG00000116641 DOCK7 155770 sc-eQTL 6.12e-01 0.0418 0.0824 0.613 Other_T L1
ENSG00000125703 ATG4C 60024 sc-eQTL 5.71e-03 0.196 0.0701 0.613 Other_T L1
ENSG00000142856 ITGB3BP -749565 sc-eQTL 2.55e-01 -0.072 0.0631 0.613 Other_T L1
ENSG00000162607 USP1 407859 sc-eQTL 7.51e-01 -0.0174 0.0548 0.613 Other_T L1
ENSG00000203965 EFCAB7 -679216 sc-eQTL 2.63e-01 0.109 0.0974 0.613 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -749255 sc-eQTL 7.96e-01 -0.0285 0.11 0.61 B_Activated L2
ENSG00000088035 ALG6 -523419 sc-eQTL 5.14e-01 -0.069 0.105 0.61 B_Activated L2
ENSG00000116641 DOCK7 155770 sc-eQTL 9.11e-01 -0.011 0.0983 0.61 B_Activated L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.22e-01 -0.051 0.103 0.61 B_Activated L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.45e-02 -0.212 0.0997 0.61 B_Activated L2
ENSG00000162607 USP1 407859 sc-eQTL 9.97e-01 0.000478 0.109 0.61 B_Activated L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 5.23e-01 0.0611 0.0955 0.61 B_Activated L2
ENSG00000079739 PGM1 -749255 sc-eQTL 4.26e-01 -0.0783 0.0982 0.614 B_Intermediate L2
ENSG00000088035 ALG6 -523419 sc-eQTL 8.59e-01 -0.0178 0.0999 0.614 B_Intermediate L2
ENSG00000116641 DOCK7 155770 sc-eQTL 5.29e-01 0.0602 0.0953 0.614 B_Intermediate L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.43e-01 -0.0375 0.0807 0.614 B_Intermediate L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.48e-01 -0.00624 0.0962 0.614 B_Intermediate L2
ENSG00000162607 USP1 407859 sc-eQTL 8.08e-01 0.0234 0.0961 0.614 B_Intermediate L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 2.58e-01 -0.108 0.095 0.614 B_Intermediate L2
ENSG00000079739 PGM1 -749255 sc-eQTL 9.82e-01 0.00216 0.0962 0.612 B_Memory L2
ENSG00000088035 ALG6 -523419 sc-eQTL 7.18e-01 -0.0353 0.0978 0.612 B_Memory L2
ENSG00000116641 DOCK7 155770 sc-eQTL 4.06e-01 0.0763 0.0916 0.612 B_Memory L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.26e-01 -0.0426 0.0872 0.612 B_Memory L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 8.14e-01 -0.0235 0.0998 0.612 B_Memory L2
ENSG00000162607 USP1 407859 sc-eQTL 3.70e-01 0.0903 0.1 0.612 B_Memory L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 9.08e-01 -0.0115 0.0991 0.612 B_Memory L2
ENSG00000079739 PGM1 -749255 sc-eQTL 3.46e-01 0.0909 0.0962 0.613 B_Naive1 L2
ENSG00000088035 ALG6 -523419 sc-eQTL 4.61e-01 0.0714 0.0966 0.613 B_Naive1 L2
ENSG00000116641 DOCK7 155770 sc-eQTL 2.55e-01 -0.105 0.0924 0.613 B_Naive1 L2
ENSG00000125703 ATG4C 60024 sc-eQTL 2.80e-02 0.156 0.0706 0.613 B_Naive1 L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 2.95e-01 -0.0993 0.0945 0.613 B_Naive1 L2
ENSG00000162607 USP1 407859 sc-eQTL 2.01e-01 -0.106 0.083 0.613 B_Naive1 L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 1.14e-01 -0.159 0.1 0.613 B_Naive1 L2
ENSG00000079739 PGM1 -749255 sc-eQTL 1.84e-01 0.127 0.0953 0.614 B_Naive2 L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.83e-01 -0.0872 0.0996 0.614 B_Naive2 L2
ENSG00000116641 DOCK7 155770 sc-eQTL 6.74e-01 0.0404 0.0959 0.614 B_Naive2 L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.97e-01 0.036 0.0923 0.614 B_Naive2 L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 8.03e-01 -0.025 0.1 0.614 B_Naive2 L2
ENSG00000162607 USP1 407859 sc-eQTL 6.33e-01 -0.0456 0.0953 0.614 B_Naive2 L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 8.96e-01 -0.013 0.0997 0.614 B_Naive2 L2
ENSG00000079739 PGM1 -749255 sc-eQTL 3.18e-02 -0.207 0.0956 0.607 CD4_CTL L2
ENSG00000088035 ALG6 -523419 sc-eQTL 8.81e-01 0.0153 0.102 0.607 CD4_CTL L2
ENSG00000116641 DOCK7 155770 sc-eQTL 1.43e-01 0.131 0.0889 0.607 CD4_CTL L2
ENSG00000125703 ATG4C 60024 sc-eQTL 5.40e-01 0.0567 0.0924 0.607 CD4_CTL L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 6.41e-02 0.182 0.098 0.607 CD4_CTL L2
ENSG00000162607 USP1 407859 sc-eQTL 9.94e-01 -0.000684 0.0941 0.607 CD4_CTL L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 2.44e-01 -0.109 0.0936 0.607 CD4_CTL L2
ENSG00000079739 PGM1 -749255 sc-eQTL 5.83e-01 0.0424 0.077 0.613 CD4_Naive L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.89e-01 0.0722 0.0835 0.613 CD4_Naive L2
ENSG00000116641 DOCK7 155770 sc-eQTL 7.06e-01 -0.031 0.0822 0.613 CD4_Naive L2
ENSG00000125703 ATG4C 60024 sc-eQTL 8.60e-01 -0.0128 0.0727 0.613 CD4_Naive L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 7.45e-01 -0.0289 0.0888 0.613 CD4_Naive L2
ENSG00000162607 USP1 407859 sc-eQTL 4.45e-01 0.0519 0.0678 0.613 CD4_Naive L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 7.87e-03 0.233 0.0868 0.613 CD4_Naive L2
ENSG00000079739 PGM1 -749255 sc-eQTL 6.41e-01 0.0376 0.0805 0.613 CD4_TCM L2
ENSG00000088035 ALG6 -523419 sc-eQTL 5.04e-02 -0.182 0.0927 0.613 CD4_TCM L2
ENSG00000116641 DOCK7 155770 sc-eQTL 8.61e-01 -0.0146 0.0829 0.613 CD4_TCM L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.40e-01 0.0377 0.0807 0.613 CD4_TCM L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 2.33e-01 0.114 0.0949 0.613 CD4_TCM L2
ENSG00000162607 USP1 407859 sc-eQTL 6.39e-01 -0.0367 0.078 0.613 CD4_TCM L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 3.04e-01 0.0946 0.0919 0.613 CD4_TCM L2
ENSG00000079739 PGM1 -749255 sc-eQTL 8.11e-01 0.0227 0.0948 0.613 CD4_TEM L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.43e-01 -0.0903 0.0951 0.613 CD4_TEM L2
ENSG00000116641 DOCK7 155770 sc-eQTL 8.99e-01 0.0118 0.0929 0.613 CD4_TEM L2
ENSG00000125703 ATG4C 60024 sc-eQTL 4.24e-01 0.0721 0.0901 0.613 CD4_TEM L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 8.28e-01 0.0203 0.0931 0.613 CD4_TEM L2
ENSG00000162607 USP1 407859 sc-eQTL 5.28e-01 0.0557 0.0881 0.613 CD4_TEM L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 3.12e-01 -0.0976 0.0962 0.613 CD4_TEM L2
ENSG00000079739 PGM1 -749255 sc-eQTL 1.70e-01 0.119 0.0863 0.613 CD8_CTL L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.25e-01 -0.0907 0.092 0.613 CD8_CTL L2
ENSG00000116641 DOCK7 155770 sc-eQTL 1.52e-01 0.125 0.0871 0.613 CD8_CTL L2
ENSG00000125703 ATG4C 60024 sc-eQTL 1.48e-02 0.226 0.0918 0.613 CD8_CTL L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 7.12e-01 -0.0358 0.0968 0.613 CD8_CTL L2
ENSG00000162607 USP1 407859 sc-eQTL 7.29e-01 0.03 0.0867 0.613 CD8_CTL L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.43e-01 0.0762 0.0991 0.613 CD8_CTL L2
ENSG00000079739 PGM1 -749255 sc-eQTL 7.07e-01 0.0333 0.0883 0.613 CD8_Naive L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.28e-01 -0.0895 0.0912 0.613 CD8_Naive L2
ENSG00000116641 DOCK7 155770 sc-eQTL 3.90e-02 -0.194 0.0936 0.613 CD8_Naive L2
ENSG00000125703 ATG4C 60024 sc-eQTL 1.33e-01 0.136 0.0903 0.613 CD8_Naive L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 7.44e-01 0.03 0.0919 0.613 CD8_Naive L2
ENSG00000162607 USP1 407859 sc-eQTL 9.61e-01 0.00377 0.0777 0.613 CD8_Naive L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.62e-01 0.0638 0.0865 0.613 CD8_Naive L2
ENSG00000079739 PGM1 -749255 sc-eQTL 8.74e-03 -0.257 0.0969 0.611 CD8_TCM L2
ENSG00000088035 ALG6 -523419 sc-eQTL 1.79e-01 0.134 0.0994 0.611 CD8_TCM L2
ENSG00000116641 DOCK7 155770 sc-eQTL 7.44e-01 0.0319 0.0974 0.611 CD8_TCM L2
ENSG00000125703 ATG4C 60024 sc-eQTL 8.90e-01 -0.0139 0.0997 0.611 CD8_TCM L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.49e-01 0.0908 0.0966 0.611 CD8_TCM L2
ENSG00000162607 USP1 407859 sc-eQTL 9.96e-01 -0.000478 0.0932 0.611 CD8_TCM L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 1.59e-02 0.236 0.0972 0.611 CD8_TCM L2
ENSG00000079739 PGM1 -749255 sc-eQTL 3.81e-01 0.0887 0.101 0.619 CD8_TEM L2
ENSG00000088035 ALG6 -523419 sc-eQTL 4.05e-02 0.207 0.1 0.619 CD8_TEM L2
ENSG00000116641 DOCK7 155770 sc-eQTL 7.89e-01 0.0264 0.0984 0.619 CD8_TEM L2
ENSG00000125703 ATG4C 60024 sc-eQTL 7.34e-02 0.169 0.0938 0.619 CD8_TEM L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 4.65e-01 0.0748 0.102 0.619 CD8_TEM L2
ENSG00000162607 USP1 407859 sc-eQTL 2.84e-01 -0.105 0.0974 0.619 CD8_TEM L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 9.09e-01 0.0114 0.0993 0.619 CD8_TEM L2
ENSG00000079739 PGM1 -749255 sc-eQTL 1.97e-01 -0.12 0.0923 0.61 MAIT L2
ENSG00000088035 ALG6 -523419 sc-eQTL 6.61e-01 0.0403 0.0917 0.61 MAIT L2
ENSG00000116641 DOCK7 155770 sc-eQTL 9.87e-01 -0.00143 0.0879 0.61 MAIT L2
ENSG00000125703 ATG4C 60024 sc-eQTL 3.80e-02 0.192 0.0918 0.61 MAIT L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 5.54e-01 -0.055 0.0928 0.61 MAIT L2
ENSG00000162607 USP1 407859 sc-eQTL 3.32e-01 0.0894 0.092 0.61 MAIT L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 2.66e-01 0.106 0.0954 0.61 MAIT L2
ENSG00000079739 PGM1 -749255 sc-eQTL 6.64e-01 -0.0413 0.095 0.613 NK_CD56bright L2
ENSG00000088035 ALG6 -523419 sc-eQTL 7.48e-01 -0.0314 0.0974 0.613 NK_CD56bright L2
ENSG00000116641 DOCK7 155770 sc-eQTL 2.77e-01 -0.0917 0.0841 0.613 NK_CD56bright L2
ENSG00000125703 ATG4C 60024 sc-eQTL 4.65e-01 -0.069 0.0942 0.613 NK_CD56bright L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.35e-01 -0.008 0.0982 0.613 NK_CD56bright L2
ENSG00000162607 USP1 407859 sc-eQTL 4.90e-01 0.07 0.101 0.613 NK_CD56bright L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 1.62e-01 -0.135 0.0964 0.613 NK_CD56bright L2
ENSG00000079739 PGM1 -749255 sc-eQTL 4.31e-01 -0.0591 0.075 0.614 NK_CD56dim L2
ENSG00000088035 ALG6 -523419 sc-eQTL 4.19e-01 -0.077 0.0951 0.614 NK_CD56dim L2
ENSG00000116641 DOCK7 155770 sc-eQTL 1.52e-01 0.118 0.0825 0.614 NK_CD56dim L2
ENSG00000125703 ATG4C 60024 sc-eQTL 5.75e-01 -0.0472 0.0841 0.614 NK_CD56dim L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 6.22e-01 -0.0473 0.0957 0.614 NK_CD56dim L2
ENSG00000162607 USP1 407859 sc-eQTL 9.31e-01 0.00808 0.0929 0.614 NK_CD56dim L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 8.63e-01 0.0179 0.103 0.614 NK_CD56dim L2
ENSG00000079739 PGM1 -749255 sc-eQTL 3.34e-01 0.0973 0.101 0.619 NK_HLA L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.29e-01 -0.102 0.104 0.619 NK_HLA L2
ENSG00000116641 DOCK7 155770 sc-eQTL 8.05e-01 0.0197 0.0799 0.619 NK_HLA L2
ENSG00000125703 ATG4C 60024 sc-eQTL 1.29e-01 0.141 0.0924 0.619 NK_HLA L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.91e-01 0.00109 0.0976 0.619 NK_HLA L2
ENSG00000162607 USP1 407859 sc-eQTL 8.08e-01 0.0248 0.102 0.619 NK_HLA L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 5.50e-01 0.0556 0.0928 0.619 NK_HLA L2
ENSG00000079739 PGM1 -749255 sc-eQTL 1.80e-01 0.109 0.0809 0.614 NK_cytokine L2
ENSG00000088035 ALG6 -523419 sc-eQTL 6.76e-02 0.167 0.0911 0.614 NK_cytokine L2
ENSG00000116641 DOCK7 155770 sc-eQTL 1.60e-01 0.119 0.0846 0.614 NK_cytokine L2
ENSG00000125703 ATG4C 60024 sc-eQTL 4.88e-01 0.0604 0.0869 0.614 NK_cytokine L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 7.75e-01 -0.0258 0.0901 0.614 NK_cytokine L2
ENSG00000162607 USP1 407859 sc-eQTL 9.35e-01 0.0077 0.0947 0.614 NK_cytokine L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.85e-01 0.067 0.0959 0.614 NK_cytokine L2
ENSG00000079739 PGM1 -749255 sc-eQTL 9.13e-01 0.0119 0.109 0.615 PB L2
ENSG00000088035 ALG6 -523419 sc-eQTL 8.67e-01 0.0192 0.114 0.615 PB L2
ENSG00000116641 DOCK7 155770 sc-eQTL 7.04e-01 -0.0465 0.122 0.615 PB L2
ENSG00000125703 ATG4C 60024 sc-eQTL 3.67e-01 0.0961 0.106 0.615 PB L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 6.26e-01 -0.0519 0.106 0.615 PB L2
ENSG00000162607 USP1 407859 sc-eQTL 8.19e-01 0.0242 0.106 0.615 PB L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 7.45e-01 0.038 0.117 0.615 PB L2
ENSG00000079739 PGM1 -749255 sc-eQTL 9.91e-01 0.000926 0.0867 0.613 Pro_T L2
ENSG00000088035 ALG6 -523419 sc-eQTL 9.64e-01 0.00403 0.0882 0.613 Pro_T L2
ENSG00000116641 DOCK7 155770 sc-eQTL 3.36e-01 0.0853 0.0883 0.613 Pro_T L2
ENSG00000125703 ATG4C 60024 sc-eQTL 9.31e-01 0.00674 0.0775 0.613 Pro_T L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 4.01e-02 -0.159 0.077 0.613 Pro_T L2
ENSG00000162607 USP1 407859 sc-eQTL 6.70e-01 0.0228 0.0534 0.613 Pro_T L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 1.86e-01 0.119 0.0899 0.613 Pro_T L2
ENSG00000079739 PGM1 -749255 sc-eQTL 8.97e-01 0.012 0.0921 0.613 Treg L2
ENSG00000088035 ALG6 -523419 sc-eQTL 7.19e-01 0.0355 0.0985 0.613 Treg L2
ENSG00000116641 DOCK7 155770 sc-eQTL 4.59e-01 0.067 0.0903 0.613 Treg L2
ENSG00000125703 ATG4C 60024 sc-eQTL 4.95e-01 0.0631 0.0923 0.613 Treg L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 2.71e-01 0.106 0.0964 0.613 Treg L2
ENSG00000162607 USP1 407859 sc-eQTL 6.14e-01 -0.0472 0.0935 0.613 Treg L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 6.95e-01 -0.0362 0.0924 0.613 Treg L2
ENSG00000079739 PGM1 -749255 sc-eQTL 4.04e-01 -0.0774 0.0925 0.61 cDC L2
ENSG00000088035 ALG6 -523419 sc-eQTL 7.61e-02 -0.166 0.0931 0.61 cDC L2
ENSG00000116641 DOCK7 155770 sc-eQTL 4.95e-01 0.063 0.0921 0.61 cDC L2
ENSG00000125703 ATG4C 60024 sc-eQTL 4.74e-01 -0.0573 0.0799 0.61 cDC L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.90e-01 0.0872 0.101 0.61 cDC L2
ENSG00000162607 USP1 407859 sc-eQTL 7.18e-01 0.0327 0.0903 0.61 cDC L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 9.82e-01 0.00187 0.0815 0.61 cDC L2
ENSG00000079739 PGM1 -749255 sc-eQTL 1.78e-01 0.116 0.0856 0.613 cMono_IL1B L2
ENSG00000088035 ALG6 -523419 sc-eQTL 7.75e-02 -0.152 0.0855 0.613 cMono_IL1B L2
ENSG00000116641 DOCK7 155770 sc-eQTL 6.28e-01 0.044 0.0907 0.613 cMono_IL1B L2
ENSG00000125703 ATG4C 60024 sc-eQTL 2.62e-01 0.0716 0.0636 0.613 cMono_IL1B L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.06e-01 0.0926 0.0902 0.613 cMono_IL1B L2
ENSG00000162607 USP1 407859 sc-eQTL 8.10e-01 -0.0192 0.0797 0.613 cMono_IL1B L2
ENSG00000240563 L1TD1 649307 sc-eQTL 7.22e-01 -0.0285 0.0801 0.613 cMono_IL1B L2
ENSG00000079739 PGM1 -749255 sc-eQTL 6.22e-01 0.0469 0.0949 0.613 cMono_S100A L2
ENSG00000088035 ALG6 -523419 sc-eQTL 1.83e-01 -0.128 0.0958 0.613 cMono_S100A L2
ENSG00000116641 DOCK7 155770 sc-eQTL 6.00e-01 0.0468 0.0892 0.613 cMono_S100A L2
ENSG00000125703 ATG4C 60024 sc-eQTL 8.09e-01 0.0187 0.0772 0.613 cMono_S100A L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.51e-01 0.0814 0.087 0.613 cMono_S100A L2
ENSG00000162607 USP1 407859 sc-eQTL 4.64e-01 -0.0658 0.0896 0.613 cMono_S100A L2
ENSG00000240563 L1TD1 649307 sc-eQTL 3.22e-01 0.0738 0.0745 0.613 cMono_S100A L2
ENSG00000079739 PGM1 -749255 sc-eQTL 3.73e-01 -0.0969 0.109 0.615 gdT L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.70e-01 -0.104 0.116 0.615 gdT L2
ENSG00000116641 DOCK7 155770 sc-eQTL 3.85e-01 0.0989 0.114 0.615 gdT L2
ENSG00000125703 ATG4C 60024 sc-eQTL 5.67e-01 -0.0623 0.109 0.615 gdT L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.38e-01 -0.111 0.115 0.615 gdT L2
ENSG00000162607 USP1 407859 sc-eQTL 1.62e-01 -0.153 0.109 0.615 gdT L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 8.10e-01 0.0274 0.114 0.615 gdT L2
ENSG00000079739 PGM1 -749255 sc-eQTL 6.45e-01 0.0439 0.0951 0.618 intMono L2
ENSG00000088035 ALG6 -523419 sc-eQTL 4.91e-01 0.0611 0.0886 0.618 intMono L2
ENSG00000116641 DOCK7 155770 sc-eQTL 3.55e-01 0.0838 0.0904 0.618 intMono L2
ENSG00000125703 ATG4C 60024 sc-eQTL 6.47e-01 -0.0397 0.0864 0.618 intMono L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 5.49e-01 0.0572 0.0951 0.618 intMono L2
ENSG00000162607 USP1 407859 sc-eQTL 6.20e-01 -0.048 0.0968 0.618 intMono L2
ENSG00000240563 L1TD1 649307 sc-eQTL 2.52e-01 -0.0815 0.071 0.618 intMono L2
ENSG00000079739 PGM1 -749255 sc-eQTL 5.18e-01 -0.057 0.0879 0.62 ncMono L2
ENSG00000088035 ALG6 -523419 sc-eQTL 3.81e-01 0.0847 0.0965 0.62 ncMono L2
ENSG00000116641 DOCK7 155770 sc-eQTL 7.30e-01 -0.0328 0.0951 0.62 ncMono L2
ENSG00000125703 ATG4C 60024 sc-eQTL 3.95e-01 0.0756 0.0887 0.62 ncMono L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 8.21e-01 0.0211 0.093 0.62 ncMono L2
ENSG00000162607 USP1 407859 sc-eQTL 8.17e-01 -0.022 0.095 0.62 ncMono L2
ENSG00000240563 L1TD1 649307 sc-eQTL 3.52e-01 -0.0628 0.0672 0.62 ncMono L2
ENSG00000079739 PGM1 -749255 sc-eQTL 9.09e-01 -0.0123 0.107 0.616 pDC L2
ENSG00000088035 ALG6 -523419 sc-eQTL 6.97e-02 0.188 0.103 0.616 pDC L2
ENSG00000116641 DOCK7 155770 sc-eQTL 6.58e-01 -0.0471 0.106 0.616 pDC L2
ENSG00000125703 ATG4C 60024 sc-eQTL 3.48e-01 0.0895 0.0952 0.616 pDC L2
ENSG00000142856 ITGB3BP -749565 sc-eQTL 8.04e-02 -0.187 0.106 0.616 pDC L2
ENSG00000162607 USP1 407859 sc-eQTL 3.60e-01 0.0999 0.109 0.616 pDC L2
ENSG00000203965 EFCAB7 -679216 sc-eQTL 6.16e-01 -0.0476 0.0948 0.616 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -749255 sc-eQTL 4.59e-01 -0.0674 0.0908 0.613 B_Memory LOneK1K
ENSG00000088035 ALG6 -523419 sc-eQTL 4.73e-01 -0.0722 0.1 0.613 B_Memory LOneK1K
ENSG00000116641 DOCK7 155770 sc-eQTL 1.26e-01 0.133 0.0868 0.613 B_Memory LOneK1K
ENSG00000125703 ATG4C 60024 sc-eQTL 5.15e-01 -0.0459 0.0705 0.613 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.16e-01 -0.093 0.0925 0.613 B_Memory LOneK1K
ENSG00000162607 USP1 407859 sc-eQTL 3.97e-01 0.0763 0.0898 0.613 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -679216 sc-eQTL 4.06e-01 -0.0804 0.0964 0.613 B_Memory LOneK1K
ENSG00000079739 PGM1 -749255 sc-eQTL 1.94e-01 0.121 0.0931 0.613 B_Naive LOneK1K
ENSG00000088035 ALG6 -523419 sc-eQTL 7.78e-01 0.0272 0.0962 0.613 B_Naive LOneK1K
ENSG00000116641 DOCK7 155770 sc-eQTL 6.20e-01 -0.0446 0.0898 0.613 B_Naive LOneK1K
ENSG00000125703 ATG4C 60024 sc-eQTL 1.26e-02 0.17 0.0676 0.613 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -749565 sc-eQTL 3.68e-01 -0.0874 0.0968 0.613 B_Naive LOneK1K
ENSG00000162607 USP1 407859 sc-eQTL 2.63e-01 -0.0932 0.083 0.613 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -679216 sc-eQTL 2.36e-01 -0.116 0.0971 0.613 B_Naive LOneK1K
ENSG00000079739 PGM1 -749255 sc-eQTL 4.13e-01 0.0717 0.0874 0.613 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -523419 sc-eQTL 5.37e-02 -0.163 0.084 0.613 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 155770 sc-eQTL 4.76e-01 0.0609 0.0853 0.613 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 60024 sc-eQTL 2.27e-01 0.0712 0.0588 0.613 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -749565 sc-eQTL 2.29e-01 0.105 0.087 0.613 CD14_Mono LOneK1K
ENSG00000162607 USP1 407859 sc-eQTL 4.13e-01 -0.0611 0.0745 0.613 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 649307 sc-eQTL 7.34e-01 0.0275 0.0809 0.613 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -749255 sc-eQTL 7.46e-01 0.0273 0.0843 0.616 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -523419 sc-eQTL 2.38e-01 0.113 0.0955 0.616 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 155770 sc-eQTL 6.94e-01 0.0373 0.0947 0.616 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 60024 sc-eQTL 9.34e-01 0.00666 0.0808 0.616 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -749565 sc-eQTL 5.25e-01 0.0597 0.0937 0.616 CD16_Mono LOneK1K
ENSG00000162607 USP1 407859 sc-eQTL 5.06e-01 -0.0587 0.088 0.616 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 649307 sc-eQTL 5.29e-02 -0.116 0.0596 0.616 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -749255 sc-eQTL 4.55e-01 0.0549 0.0734 0.614 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -523419 sc-eQTL 9.95e-01 -0.000534 0.0882 0.614 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 155770 sc-eQTL 3.83e-02 0.163 0.0782 0.614 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 60024 sc-eQTL 9.86e-01 0.00138 0.0789 0.614 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -749565 sc-eQTL 9.31e-01 -0.00813 0.0935 0.614 NK_CD56dim LOneK1K
ENSG00000162607 USP1 407859 sc-eQTL 6.45e-01 -0.0391 0.0848 0.614 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -679216 sc-eQTL 7.01e-01 0.0397 0.103 0.614 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 155788 eQTL 3.22e-07 0.115 0.0223 0.0 0.0 0.35
ENSG00000125703 ATG4C 60024 eQTL 5.75e-06 0.0776 0.017 0.0145 0.0141 0.35
ENSG00000132855 ANGPTL3 246669 pQTL 0.0176 0.0714 0.0301 0.0 0.0 0.356
ENSG00000142856 ITGB3BP -749565 eQTL 0.00399 -0.0862 0.0299 0.0 0.0 0.35
ENSG00000162607 USP1 407859 eQTL 0.00081 0.044 0.0131 0.0 0.0 0.35

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 155788 1.54e-05 1.04e-05 6.45e-06 5.25e-06 2.28e-06 5.83e-06 1.45e-05 1.25e-06 7.77e-06 5.45e-06 1.28e-05 4.5e-06 2.28e-05 3.61e-06 4.5e-06 6.6e-06 6.38e-06 6.63e-06 3.78e-06 2.63e-06 5.62e-06 1.06e-05 1.27e-05 3.25e-06 1.31e-05 3.52e-06 4.67e-06 2.5e-06 1.45e-05 7.87e-06 4.95e-06 8.14e-07 1.31e-06 3.61e-06 4.09e-06 2.09e-06 1.39e-06 1.9e-06 2.2e-06 1.42e-06 8.4e-07 2.33e-05 3.25e-06 1.88e-07 7.68e-07 2.61e-06 1.56e-06 7.8e-07 5.34e-07
ENSG00000125703 ATG4C 60024 3.86e-05 1.6e-05 7.16e-06 7.63e-06 3.23e-06 9.05e-06 2.58e-05 2.11e-06 1.25e-05 6.42e-06 1.91e-05 6.8e-06 2.69e-05 6.13e-06 5.38e-06 9.61e-06 8.74e-06 1.11e-05 6.14e-06 2.89e-06 7.03e-06 1.7e-05 2.35e-05 4.68e-06 2.41e-05 5e-06 7.6e-06 4.61e-06 2.33e-05 1.19e-05 8.2e-06 9.93e-07 1.3e-06 3.78e-06 5.21e-06 2.65e-06 1.83e-06 1.99e-06 2.05e-06 2.36e-06 1.05e-06 4.41e-05 4.71e-06 2.03e-07 1.15e-06 3e-06 1.98e-06 6.86e-07 8.23e-07
ENSG00000142856 ITGB3BP -749565 4.33e-06 2.78e-06 6.38e-07 1.96e-06 3.82e-07 8.28e-07 2.69e-06 4.08e-07 1.67e-06 1.15e-06 4.9e-06 1.45e-06 8.24e-06 1.62e-06 1.17e-06 1.54e-06 9.77e-07 2.13e-06 1.38e-06 6.19e-07 1.19e-06 3.98e-06 3.52e-06 1.02e-06 3.8e-06 9.3e-07 1.12e-06 8.66e-07 2.64e-06 2e-06 1.94e-06 1.54e-07 3.35e-07 1.77e-06 1.67e-06 6.2e-07 6.93e-07 3.68e-07 9.59e-07 1.86e-07 2.91e-07 1.3e-05 3.76e-07 8.98e-08 2.47e-07 3.92e-07 2.35e-07 8.82e-08 5.02e-08
ENSG00000162607 USP1 407859 6.46e-06 5.49e-06 2.45e-06 3.37e-06 1.32e-06 2.2e-06 9.23e-06 9.86e-07 5.12e-06 3.15e-06 8.95e-06 3.41e-06 1.45e-05 2.68e-06 2.98e-06 3.74e-06 3.53e-06 3.95e-06 1.9e-06 1.07e-06 2.77e-06 6.43e-06 6.68e-06 1.73e-06 8.14e-06 1.95e-06 2.49e-06 1.51e-06 6.6e-06 4.73e-06 2.69e-06 5.08e-07 6.12e-07 2.77e-06 2.03e-06 9.89e-07 9.6e-07 4.24e-07 9.5e-07 7.37e-07 2.4e-07 1.77e-05 1.45e-06 1.81e-07 4.38e-07 1.47e-06 9.63e-07 2.87e-07 3.53e-07