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Genes within 1Mb (chr1:62828034:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765377 sc-eQTL 5.88e-01 0.043 0.0792 0.603 B L1
ENSG00000088035 ALG6 -539541 sc-eQTL 7.03e-01 -0.0314 0.0821 0.603 B L1
ENSG00000116641 DOCK7 139648 sc-eQTL 6.84e-01 -0.0334 0.0821 0.603 B L1
ENSG00000125703 ATG4C 43902 sc-eQTL 3.58e-01 0.0524 0.057 0.603 B L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 2.23e-01 -0.111 0.0905 0.603 B L1
ENSG00000162607 USP1 391737 sc-eQTL 9.05e-01 0.0094 0.0788 0.603 B L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 1.22e-01 -0.144 0.0925 0.603 B L1
ENSG00000079739 PGM1 -765377 sc-eQTL 6.87e-01 0.0273 0.0679 0.603 CD4T L1
ENSG00000088035 ALG6 -539541 sc-eQTL 7.39e-01 -0.025 0.0749 0.603 CD4T L1
ENSG00000116641 DOCK7 139648 sc-eQTL 5.06e-01 0.0505 0.0758 0.603 CD4T L1
ENSG00000125703 ATG4C 43902 sc-eQTL 6.30e-01 0.0295 0.0612 0.603 CD4T L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 4.91e-01 0.0599 0.0869 0.603 CD4T L1
ENSG00000162607 USP1 391737 sc-eQTL 8.38e-01 0.0121 0.0594 0.603 CD4T L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 5.62e-02 0.149 0.0774 0.603 CD4T L1
ENSG00000079739 PGM1 -765377 sc-eQTL 8.50e-01 0.0142 0.0752 0.603 CD8T L1
ENSG00000088035 ALG6 -539541 sc-eQTL 6.70e-01 -0.0354 0.0829 0.603 CD8T L1
ENSG00000116641 DOCK7 139648 sc-eQTL 8.97e-01 -0.0109 0.084 0.603 CD8T L1
ENSG00000125703 ATG4C 43902 sc-eQTL 4.98e-02 0.156 0.0791 0.603 CD8T L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.47e-01 0.0288 0.0892 0.603 CD8T L1
ENSG00000162607 USP1 391737 sc-eQTL 6.11e-01 -0.0354 0.0695 0.603 CD8T L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 5.09e-01 0.0589 0.0889 0.603 CD8T L1
ENSG00000079739 PGM1 -765377 sc-eQTL 4.36e-01 -0.0656 0.0841 0.601 DC L1
ENSG00000088035 ALG6 -539541 sc-eQTL 9.11e-01 0.00974 0.0869 0.601 DC L1
ENSG00000116641 DOCK7 139648 sc-eQTL 9.48e-01 0.00579 0.0891 0.601 DC L1
ENSG00000125703 ATG4C 43902 sc-eQTL 6.47e-01 -0.0319 0.0697 0.601 DC L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 9.34e-01 -0.00807 0.0974 0.601 DC L1
ENSG00000162607 USP1 391737 sc-eQTL 6.64e-01 0.037 0.085 0.601 DC L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 3.80e-01 -0.0745 0.0847 0.601 DC L1
ENSG00000079739 PGM1 -765377 sc-eQTL 3.37e-01 0.0785 0.0816 0.603 Mono L1
ENSG00000088035 ALG6 -539541 sc-eQTL 1.02e-01 -0.139 0.0848 0.603 Mono L1
ENSG00000116641 DOCK7 139648 sc-eQTL 1.96e-01 0.107 0.0822 0.603 Mono L1
ENSG00000125703 ATG4C 43902 sc-eQTL 1.74e-01 0.0758 0.0555 0.603 Mono L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 4.07e-01 0.0732 0.088 0.603 Mono L1
ENSG00000162607 USP1 391737 sc-eQTL 5.76e-01 -0.0405 0.0724 0.603 Mono L1
ENSG00000240563 L1TD1 633185 sc-eQTL 3.48e-01 -0.0634 0.0674 0.603 Mono L1
ENSG00000079739 PGM1 -765377 sc-eQTL 4.64e-01 0.052 0.0708 0.603 NK L1
ENSG00000088035 ALG6 -539541 sc-eQTL 8.85e-01 -0.0121 0.0831 0.603 NK L1
ENSG00000116641 DOCK7 139648 sc-eQTL 4.65e-02 0.136 0.0678 0.603 NK L1
ENSG00000125703 ATG4C 43902 sc-eQTL 9.43e-01 -0.00522 0.0735 0.603 NK L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.04e-01 0.0228 0.0914 0.603 NK L1
ENSG00000162607 USP1 391737 sc-eQTL 7.27e-01 -0.0285 0.0816 0.603 NK L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 8.73e-01 -0.0159 0.0992 0.603 NK L1
ENSG00000079739 PGM1 -765377 sc-eQTL 3.94e-01 -0.0674 0.0789 0.603 Other_T L1
ENSG00000088035 ALG6 -539541 sc-eQTL 2.03e-01 0.101 0.0791 0.603 Other_T L1
ENSG00000116641 DOCK7 139648 sc-eQTL 7.50e-01 0.0258 0.0811 0.603 Other_T L1
ENSG00000125703 ATG4C 43902 sc-eQTL 4.01e-03 0.2 0.0688 0.603 Other_T L1
ENSG00000142856 ITGB3BP -765687 sc-eQTL 2.27e-01 -0.0753 0.062 0.603 Other_T L1
ENSG00000162607 USP1 391737 sc-eQTL 8.59e-01 -0.00962 0.054 0.603 Other_T L1
ENSG00000203965 EFCAB7 -695338 sc-eQTL 2.88e-01 0.102 0.0958 0.603 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765377 sc-eQTL 6.44e-01 -0.0509 0.11 0.602 B_Activated L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.75e-01 -0.0753 0.105 0.602 B_Activated L2
ENSG00000116641 DOCK7 139648 sc-eQTL 9.86e-01 -0.00169 0.0981 0.602 B_Activated L2
ENSG00000125703 ATG4C 43902 sc-eQTL 5.68e-01 -0.0589 0.103 0.602 B_Activated L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 6.41e-02 -0.186 0.0998 0.602 B_Activated L2
ENSG00000162607 USP1 391737 sc-eQTL 9.97e-01 -0.000469 0.109 0.602 B_Activated L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 7.16e-01 0.0348 0.0954 0.602 B_Activated L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.57e-01 -0.0722 0.0969 0.603 B_Intermediate L2
ENSG00000088035 ALG6 -539541 sc-eQTL 6.25e-01 -0.0483 0.0985 0.603 B_Intermediate L2
ENSG00000116641 DOCK7 139648 sc-eQTL 5.49e-01 0.0565 0.094 0.603 B_Intermediate L2
ENSG00000125703 ATG4C 43902 sc-eQTL 6.97e-01 -0.031 0.0797 0.603 B_Intermediate L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.95e-01 -0.0125 0.0949 0.603 B_Intermediate L2
ENSG00000162607 USP1 391737 sc-eQTL 7.69e-01 0.0278 0.0947 0.603 B_Intermediate L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 1.63e-01 -0.131 0.0936 0.603 B_Intermediate L2
ENSG00000079739 PGM1 -765377 sc-eQTL 8.84e-01 -0.0138 0.0947 0.601 B_Memory L2
ENSG00000088035 ALG6 -539541 sc-eQTL 5.86e-01 -0.0524 0.0962 0.601 B_Memory L2
ENSG00000116641 DOCK7 139648 sc-eQTL 4.92e-01 0.062 0.0902 0.601 B_Memory L2
ENSG00000125703 ATG4C 43902 sc-eQTL 9.15e-01 -0.00912 0.0858 0.601 B_Memory L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.72e-01 -0.0159 0.0982 0.601 B_Memory L2
ENSG00000162607 USP1 391737 sc-eQTL 3.44e-01 0.0938 0.0988 0.601 B_Memory L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 8.24e-01 0.0217 0.0974 0.601 B_Memory L2
ENSG00000079739 PGM1 -765377 sc-eQTL 7.65e-01 0.0285 0.0952 0.603 B_Naive1 L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.75e-01 0.0684 0.0954 0.603 B_Naive1 L2
ENSG00000116641 DOCK7 139648 sc-eQTL 1.43e-01 -0.134 0.0911 0.603 B_Naive1 L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.19e-02 0.143 0.0698 0.603 B_Naive1 L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.39e-01 -0.0894 0.0934 0.603 B_Naive1 L2
ENSG00000162607 USP1 391737 sc-eQTL 2.59e-01 -0.0928 0.082 0.603 B_Naive1 L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 1.71e-01 -0.136 0.0994 0.603 B_Naive1 L2
ENSG00000079739 PGM1 -765377 sc-eQTL 3.76e-01 0.0836 0.0942 0.603 B_Naive2 L2
ENSG00000088035 ALG6 -539541 sc-eQTL 3.03e-01 -0.101 0.0982 0.603 B_Naive2 L2
ENSG00000116641 DOCK7 139648 sc-eQTL 7.63e-01 0.0285 0.0947 0.603 B_Naive2 L2
ENSG00000125703 ATG4C 43902 sc-eQTL 9.99e-01 -7.83e-05 0.0911 0.603 B_Naive2 L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.47e-01 -0.019 0.0988 0.603 B_Naive2 L2
ENSG00000162607 USP1 391737 sc-eQTL 9.01e-01 0.0117 0.0941 0.603 B_Naive2 L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 6.33e-01 -0.047 0.0983 0.603 B_Naive2 L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.27e-02 -0.191 0.0937 0.595 CD4_CTL L2
ENSG00000088035 ALG6 -539541 sc-eQTL 8.47e-01 0.0194 0.1 0.595 CD4_CTL L2
ENSG00000116641 DOCK7 139648 sc-eQTL 1.50e-01 0.126 0.087 0.595 CD4_CTL L2
ENSG00000125703 ATG4C 43902 sc-eQTL 7.56e-01 0.0281 0.0905 0.595 CD4_CTL L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 4.75e-02 0.191 0.0959 0.595 CD4_CTL L2
ENSG00000162607 USP1 391737 sc-eQTL 9.75e-01 -0.00291 0.0922 0.595 CD4_CTL L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 3.19e-01 -0.0917 0.0918 0.595 CD4_CTL L2
ENSG00000079739 PGM1 -765377 sc-eQTL 3.68e-01 0.0686 0.076 0.603 CD4_Naive L2
ENSG00000088035 ALG6 -539541 sc-eQTL 6.51e-01 0.0375 0.0826 0.603 CD4_Naive L2
ENSG00000116641 DOCK7 139648 sc-eQTL 8.96e-01 -0.0106 0.0812 0.603 CD4_Naive L2
ENSG00000125703 ATG4C 43902 sc-eQTL 9.97e-01 0.000242 0.0718 0.603 CD4_Naive L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.92e-01 -0.012 0.0878 0.603 CD4_Naive L2
ENSG00000162607 USP1 391737 sc-eQTL 4.94e-01 0.0459 0.067 0.603 CD4_Naive L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 6.76e-03 0.234 0.0856 0.603 CD4_Naive L2
ENSG00000079739 PGM1 -765377 sc-eQTL 8.03e-01 0.0199 0.0795 0.603 CD4_TCM L2
ENSG00000088035 ALG6 -539541 sc-eQTL 8.08e-02 -0.161 0.0917 0.603 CD4_TCM L2
ENSG00000116641 DOCK7 139648 sc-eQTL 9.26e-01 -0.00759 0.0818 0.603 CD4_TCM L2
ENSG00000125703 ATG4C 43902 sc-eQTL 5.76e-01 0.0446 0.0796 0.603 CD4_TCM L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.80e-01 0.0825 0.0937 0.603 CD4_TCM L2
ENSG00000162607 USP1 391737 sc-eQTL 7.93e-01 -0.0202 0.077 0.603 CD4_TCM L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 3.81e-01 0.0797 0.0907 0.603 CD4_TCM L2
ENSG00000079739 PGM1 -765377 sc-eQTL 7.49e-01 0.0299 0.0935 0.603 CD4_TEM L2
ENSG00000088035 ALG6 -539541 sc-eQTL 3.13e-01 -0.0948 0.0938 0.603 CD4_TEM L2
ENSG00000116641 DOCK7 139648 sc-eQTL 9.54e-01 0.00532 0.0916 0.603 CD4_TEM L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.51e-01 0.0671 0.0889 0.603 CD4_TEM L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 6.68e-01 0.0394 0.0918 0.603 CD4_TEM L2
ENSG00000162607 USP1 391737 sc-eQTL 6.22e-01 0.0429 0.087 0.603 CD4_TEM L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 2.07e-01 -0.12 0.0948 0.603 CD4_TEM L2
ENSG00000079739 PGM1 -765377 sc-eQTL 1.50e-01 0.123 0.0851 0.603 CD8_CTL L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.11e-01 -0.0748 0.0908 0.603 CD8_CTL L2
ENSG00000116641 DOCK7 139648 sc-eQTL 2.75e-01 0.0942 0.0861 0.603 CD8_CTL L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.23e-02 0.186 0.091 0.603 CD8_CTL L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.07e-01 -0.0234 0.0955 0.603 CD8_CTL L2
ENSG00000162607 USP1 391737 sc-eQTL 8.10e-01 0.0206 0.0856 0.603 CD8_CTL L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 2.50e-01 0.113 0.0976 0.603 CD8_CTL L2
ENSG00000079739 PGM1 -765377 sc-eQTL 7.85e-01 0.0238 0.0872 0.603 CD8_Naive L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.17e-01 -0.0733 0.0901 0.603 CD8_Naive L2
ENSG00000116641 DOCK7 139648 sc-eQTL 2.63e-02 -0.206 0.0922 0.603 CD8_Naive L2
ENSG00000125703 ATG4C 43902 sc-eQTL 1.78e-01 0.12 0.0892 0.603 CD8_Naive L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 6.56e-01 0.0404 0.0906 0.603 CD8_Naive L2
ENSG00000162607 USP1 391737 sc-eQTL 9.95e-01 0.000441 0.0767 0.603 CD8_Naive L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 6.37e-01 0.0404 0.0854 0.603 CD8_Naive L2
ENSG00000079739 PGM1 -765377 sc-eQTL 6.52e-03 -0.263 0.0956 0.6 CD8_TCM L2
ENSG00000088035 ALG6 -539541 sc-eQTL 9.84e-02 0.163 0.098 0.6 CD8_TCM L2
ENSG00000116641 DOCK7 139648 sc-eQTL 7.84e-01 0.0265 0.0963 0.6 CD8_TCM L2
ENSG00000125703 ATG4C 43902 sc-eQTL 7.81e-01 -0.0274 0.0985 0.6 CD8_TCM L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.57e-01 0.0881 0.0955 0.6 CD8_TCM L2
ENSG00000162607 USP1 391737 sc-eQTL 9.67e-01 0.00382 0.0921 0.6 CD8_TCM L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 5.73e-03 0.267 0.0956 0.6 CD8_TCM L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.36e-01 0.078 0.0999 0.607 CD8_TEM L2
ENSG00000088035 ALG6 -539541 sc-eQTL 5.97e-02 0.189 0.0996 0.607 CD8_TEM L2
ENSG00000116641 DOCK7 139648 sc-eQTL 9.11e-01 0.011 0.0974 0.607 CD8_TEM L2
ENSG00000125703 ATG4C 43902 sc-eQTL 9.15e-02 0.158 0.093 0.607 CD8_TEM L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 5.73e-01 0.0572 0.101 0.607 CD8_TEM L2
ENSG00000162607 USP1 391737 sc-eQTL 2.63e-01 -0.108 0.0964 0.607 CD8_TEM L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 9.14e-01 -0.0107 0.0983 0.607 CD8_TEM L2
ENSG00000079739 PGM1 -765377 sc-eQTL 1.55e-01 -0.13 0.0908 0.6 MAIT L2
ENSG00000088035 ALG6 -539541 sc-eQTL 7.32e-01 0.031 0.0903 0.6 MAIT L2
ENSG00000116641 DOCK7 139648 sc-eQTL 8.82e-01 -0.0129 0.0866 0.6 MAIT L2
ENSG00000125703 ATG4C 43902 sc-eQTL 2.62e-02 0.202 0.0902 0.6 MAIT L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 6.57e-01 -0.0407 0.0914 0.6 MAIT L2
ENSG00000162607 USP1 391737 sc-eQTL 4.53e-01 0.0682 0.0906 0.6 MAIT L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 2.34e-01 0.112 0.0939 0.6 MAIT L2
ENSG00000079739 PGM1 -765377 sc-eQTL 7.88e-01 -0.025 0.0929 0.6 NK_CD56bright L2
ENSG00000088035 ALG6 -539541 sc-eQTL 8.31e-01 -0.0203 0.0952 0.6 NK_CD56bright L2
ENSG00000116641 DOCK7 139648 sc-eQTL 1.19e-01 -0.128 0.082 0.6 NK_CD56bright L2
ENSG00000125703 ATG4C 43902 sc-eQTL 2.09e-01 -0.116 0.0918 0.6 NK_CD56bright L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.88e-01 -0.0258 0.096 0.6 NK_CD56bright L2
ENSG00000162607 USP1 391737 sc-eQTL 5.38e-01 0.061 0.0989 0.6 NK_CD56bright L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 1.26e-01 -0.145 0.0941 0.6 NK_CD56bright L2
ENSG00000079739 PGM1 -765377 sc-eQTL 3.08e-01 -0.0751 0.0735 0.601 NK_CD56dim L2
ENSG00000088035 ALG6 -539541 sc-eQTL 5.14e-01 -0.0611 0.0934 0.601 NK_CD56dim L2
ENSG00000116641 DOCK7 139648 sc-eQTL 7.27e-02 0.146 0.0807 0.601 NK_CD56dim L2
ENSG00000125703 ATG4C 43902 sc-eQTL 5.75e-01 -0.0464 0.0826 0.601 NK_CD56dim L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 9.72e-01 -0.00329 0.094 0.601 NK_CD56dim L2
ENSG00000162607 USP1 391737 sc-eQTL 8.43e-01 -0.0181 0.0912 0.601 NK_CD56dim L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 9.31e-01 0.00879 0.102 0.601 NK_CD56dim L2
ENSG00000079739 PGM1 -765377 sc-eQTL 2.08e-01 0.124 0.0984 0.607 NK_HLA L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.73e-01 -0.0735 0.102 0.607 NK_HLA L2
ENSG00000116641 DOCK7 139648 sc-eQTL 5.32e-01 0.049 0.0783 0.607 NK_HLA L2
ENSG00000125703 ATG4C 43902 sc-eQTL 2.26e-01 0.11 0.0908 0.607 NK_HLA L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.49e-01 0.0306 0.0956 0.607 NK_HLA L2
ENSG00000162607 USP1 391737 sc-eQTL 9.91e-01 0.00117 0.1 0.607 NK_HLA L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 3.64e-01 0.0828 0.0909 0.607 NK_HLA L2
ENSG00000079739 PGM1 -765377 sc-eQTL 1.90e-01 0.104 0.0794 0.601 NK_cytokine L2
ENSG00000088035 ALG6 -539541 sc-eQTL 7.29e-02 0.161 0.0894 0.601 NK_cytokine L2
ENSG00000116641 DOCK7 139648 sc-eQTL 1.03e-01 0.136 0.0829 0.601 NK_cytokine L2
ENSG00000125703 ATG4C 43902 sc-eQTL 5.70e-01 0.0485 0.0853 0.601 NK_cytokine L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 8.88e-01 -0.0125 0.0884 0.601 NK_cytokine L2
ENSG00000162607 USP1 391737 sc-eQTL 7.40e-01 -0.0309 0.0929 0.601 NK_cytokine L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 3.37e-01 0.0905 0.094 0.601 NK_cytokine L2
ENSG00000079739 PGM1 -765377 sc-eQTL 8.10e-01 0.0255 0.106 0.607 PB L2
ENSG00000088035 ALG6 -539541 sc-eQTL 7.65e-01 -0.0333 0.111 0.607 PB L2
ENSG00000116641 DOCK7 139648 sc-eQTL 8.37e-01 -0.0245 0.119 0.607 PB L2
ENSG00000125703 ATG4C 43902 sc-eQTL 3.17e-01 0.104 0.103 0.607 PB L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 6.98e-01 -0.0402 0.103 0.607 PB L2
ENSG00000162607 USP1 391737 sc-eQTL 8.41e-01 0.0207 0.103 0.607 PB L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 6.52e-01 0.0514 0.114 0.607 PB L2
ENSG00000079739 PGM1 -765377 sc-eQTL 9.09e-01 0.00977 0.0857 0.602 Pro_T L2
ENSG00000088035 ALG6 -539541 sc-eQTL 7.14e-01 0.032 0.0871 0.602 Pro_T L2
ENSG00000116641 DOCK7 139648 sc-eQTL 3.19e-01 0.0871 0.0872 0.602 Pro_T L2
ENSG00000125703 ATG4C 43902 sc-eQTL 6.32e-01 0.0367 0.0765 0.602 Pro_T L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 2.61e-02 -0.17 0.0759 0.602 Pro_T L2
ENSG00000162607 USP1 391737 sc-eQTL 7.29e-01 0.0183 0.0528 0.602 Pro_T L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 1.68e-01 0.123 0.0888 0.602 Pro_T L2
ENSG00000079739 PGM1 -765377 sc-eQTL 9.13e-01 -0.00988 0.0906 0.603 Treg L2
ENSG00000088035 ALG6 -539541 sc-eQTL 8.58e-01 0.0174 0.0969 0.603 Treg L2
ENSG00000116641 DOCK7 139648 sc-eQTL 5.23e-01 0.0568 0.0889 0.603 Treg L2
ENSG00000125703 ATG4C 43902 sc-eQTL 7.63e-01 0.0274 0.0909 0.603 Treg L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 2.14e-01 0.118 0.0947 0.603 Treg L2
ENSG00000162607 USP1 391737 sc-eQTL 5.75e-01 -0.0517 0.0919 0.603 Treg L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 8.80e-01 -0.0137 0.091 0.603 Treg L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.53e-01 -0.0677 0.0901 0.598 cDC L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.65e-02 -0.181 0.0905 0.598 cDC L2
ENSG00000116641 DOCK7 139648 sc-eQTL 4.27e-01 0.0715 0.0897 0.598 cDC L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.43e-01 -0.0599 0.0779 0.598 cDC L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 5.89e-01 0.0534 0.0988 0.598 cDC L2
ENSG00000162607 USP1 391737 sc-eQTL 7.61e-01 0.0269 0.088 0.598 cDC L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 9.78e-01 -0.00222 0.0794 0.598 cDC L2
ENSG00000079739 PGM1 -765377 sc-eQTL 1.92e-01 0.11 0.0842 0.603 cMono_IL1B L2
ENSG00000088035 ALG6 -539541 sc-eQTL 9.61e-02 -0.141 0.0841 0.603 cMono_IL1B L2
ENSG00000116641 DOCK7 139648 sc-eQTL 4.14e-01 0.073 0.0891 0.603 cMono_IL1B L2
ENSG00000125703 ATG4C 43902 sc-eQTL 3.86e-01 0.0544 0.0627 0.603 cMono_IL1B L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 4.32e-01 0.0699 0.0888 0.603 cMono_IL1B L2
ENSG00000162607 USP1 391737 sc-eQTL 8.83e-01 -0.0116 0.0784 0.603 cMono_IL1B L2
ENSG00000240563 L1TD1 633185 sc-eQTL 7.94e-01 -0.0206 0.0788 0.603 cMono_IL1B L2
ENSG00000079739 PGM1 -765377 sc-eQTL 5.09e-01 0.0618 0.0933 0.603 cMono_S100A L2
ENSG00000088035 ALG6 -539541 sc-eQTL 2.08e-01 -0.119 0.0943 0.603 cMono_S100A L2
ENSG00000116641 DOCK7 139648 sc-eQTL 4.70e-01 0.0635 0.0877 0.603 cMono_S100A L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.63e-01 0.0558 0.0759 0.603 cMono_S100A L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.26e-01 0.0843 0.0856 0.603 cMono_S100A L2
ENSG00000162607 USP1 391737 sc-eQTL 6.00e-01 -0.0463 0.0882 0.603 cMono_S100A L2
ENSG00000240563 L1TD1 633185 sc-eQTL 6.34e-01 0.035 0.0734 0.603 cMono_S100A L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.18e-01 -0.0869 0.107 0.597 gdT L2
ENSG00000088035 ALG6 -539541 sc-eQTL 4.71e-01 -0.0825 0.114 0.597 gdT L2
ENSG00000116641 DOCK7 139648 sc-eQTL 4.87e-01 0.078 0.112 0.597 gdT L2
ENSG00000125703 ATG4C 43902 sc-eQTL 4.06e-01 -0.0892 0.107 0.597 gdT L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.78e-01 -0.1 0.113 0.597 gdT L2
ENSG00000162607 USP1 391737 sc-eQTL 2.00e-01 -0.138 0.107 0.597 gdT L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 8.48e-01 -0.0214 0.112 0.597 gdT L2
ENSG00000079739 PGM1 -765377 sc-eQTL 5.91e-01 0.05 0.0929 0.604 intMono L2
ENSG00000088035 ALG6 -539541 sc-eQTL 5.52e-01 0.0515 0.0865 0.604 intMono L2
ENSG00000116641 DOCK7 139648 sc-eQTL 3.02e-01 0.0912 0.0882 0.604 intMono L2
ENSG00000125703 ATG4C 43902 sc-eQTL 8.12e-01 -0.0201 0.0844 0.604 intMono L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.09e-01 0.0347 0.093 0.604 intMono L2
ENSG00000162607 USP1 391737 sc-eQTL 5.48e-01 -0.0568 0.0945 0.604 intMono L2
ENSG00000240563 L1TD1 633185 sc-eQTL 3.03e-01 -0.0716 0.0694 0.604 intMono L2
ENSG00000079739 PGM1 -765377 sc-eQTL 7.99e-01 -0.0218 0.0856 0.606 ncMono L2
ENSG00000088035 ALG6 -539541 sc-eQTL 3.99e-01 0.0793 0.0939 0.606 ncMono L2
ENSG00000116641 DOCK7 139648 sc-eQTL 8.75e-01 -0.0146 0.0926 0.606 ncMono L2
ENSG00000125703 ATG4C 43902 sc-eQTL 3.70e-01 0.0775 0.0863 0.606 ncMono L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 4.67e-01 0.0658 0.0904 0.606 ncMono L2
ENSG00000162607 USP1 391737 sc-eQTL 7.05e-01 -0.035 0.0924 0.606 ncMono L2
ENSG00000240563 L1TD1 633185 sc-eQTL 3.66e-01 -0.0593 0.0654 0.606 ncMono L2
ENSG00000079739 PGM1 -765377 sc-eQTL 4.77e-01 -0.073 0.102 0.599 pDC L2
ENSG00000088035 ALG6 -539541 sc-eQTL 5.52e-02 0.191 0.0988 0.599 pDC L2
ENSG00000116641 DOCK7 139648 sc-eQTL 6.18e-01 -0.0509 0.102 0.599 pDC L2
ENSG00000125703 ATG4C 43902 sc-eQTL 5.16e-01 0.0595 0.0915 0.599 pDC L2
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.76e-02 -0.181 0.102 0.599 pDC L2
ENSG00000162607 USP1 391737 sc-eQTL 2.59e-01 0.118 0.104 0.599 pDC L2
ENSG00000203965 EFCAB7 -695338 sc-eQTL 7.32e-01 -0.0312 0.091 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765377 sc-eQTL 4.71e-01 -0.0648 0.0897 0.603 B_Memory LOneK1K
ENSG00000088035 ALG6 -539541 sc-eQTL 2.96e-01 -0.104 0.0991 0.603 B_Memory LOneK1K
ENSG00000116641 DOCK7 139648 sc-eQTL 1.74e-01 0.117 0.0858 0.603 B_Memory LOneK1K
ENSG00000125703 ATG4C 43902 sc-eQTL 6.64e-01 -0.0303 0.0696 0.603 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.49e-01 -0.0857 0.0914 0.603 B_Memory LOneK1K
ENSG00000162607 USP1 391737 sc-eQTL 2.98e-01 0.0925 0.0887 0.603 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -695338 sc-eQTL 4.01e-01 -0.0801 0.0953 0.603 B_Memory LOneK1K
ENSG00000079739 PGM1 -765377 sc-eQTL 5.41e-01 0.0565 0.0923 0.603 B_Naive LOneK1K
ENSG00000088035 ALG6 -539541 sc-eQTL 7.81e-01 0.0264 0.0951 0.603 B_Naive LOneK1K
ENSG00000116641 DOCK7 139648 sc-eQTL 4.35e-01 -0.0694 0.0887 0.603 B_Naive LOneK1K
ENSG00000125703 ATG4C 43902 sc-eQTL 3.55e-02 0.142 0.067 0.603 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.81e-01 -0.0839 0.0956 0.603 B_Naive LOneK1K
ENSG00000162607 USP1 391737 sc-eQTL 4.93e-01 -0.0564 0.0822 0.603 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -695338 sc-eQTL 2.02e-01 -0.123 0.0959 0.603 B_Naive LOneK1K
ENSG00000079739 PGM1 -765377 sc-eQTL 3.15e-01 0.0865 0.086 0.603 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -539541 sc-eQTL 5.80e-02 -0.158 0.0827 0.603 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 139648 sc-eQTL 3.25e-01 0.0828 0.0838 0.603 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 43902 sc-eQTL 1.75e-01 0.0787 0.0578 0.603 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -765687 sc-eQTL 2.62e-01 0.0963 0.0857 0.603 CD14_Mono LOneK1K
ENSG00000162607 USP1 391737 sc-eQTL 5.17e-01 -0.0476 0.0733 0.603 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 633185 sc-eQTL 8.51e-01 0.015 0.0796 0.603 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -765377 sc-eQTL 5.14e-01 0.0536 0.0821 0.603 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -539541 sc-eQTL 2.84e-01 0.0999 0.093 0.603 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 139648 sc-eQTL 5.91e-01 0.0497 0.0922 0.603 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 43902 sc-eQTL 8.10e-01 0.019 0.0787 0.603 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -765687 sc-eQTL 3.86e-01 0.0792 0.0912 0.603 CD16_Mono LOneK1K
ENSG00000162607 USP1 391737 sc-eQTL 4.10e-01 -0.0707 0.0857 0.603 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 633185 sc-eQTL 6.44e-02 -0.108 0.0581 0.603 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -765377 sc-eQTL 4.86e-01 0.0502 0.0719 0.601 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -539541 sc-eQTL 9.47e-01 0.00576 0.0865 0.601 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 139648 sc-eQTL 9.67e-03 0.199 0.0762 0.601 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 43902 sc-eQTL 9.51e-01 -0.00471 0.0773 0.601 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -765687 sc-eQTL 7.75e-01 0.0262 0.0916 0.601 NK_CD56dim LOneK1K
ENSG00000162607 USP1 391737 sc-eQTL 4.45e-01 -0.0635 0.0831 0.601 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -695338 sc-eQTL 5.41e-01 0.062 0.101 0.601 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 139666 eQTL 3.83e-11 0.145 0.0216 0.0 0.0 0.373
ENSG00000125703 ATG4C 43902 eQTL 1.47e-05 0.0725 0.0166 0.00578 0.00577 0.373
ENSG00000132855 ANGPTL3 230547 pQTL 0.00115 0.096 0.0295 0.0 0.0 0.379
ENSG00000142856 ITGB3BP -765687 eQTL 0.00404 -0.0841 0.0292 0.0 0.0 0.373
ENSG00000162607 USP1 391737 eQTL 0.000326 0.0461 0.0128 0.0 0.0 0.373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 139666 4.57e-06 5.32e-06 6.38e-07 3.2e-06 1.62e-06 1.53e-06 5.25e-06 9.79e-07 5.18e-06 2.67e-06 5.67e-06 3.33e-06 7.51e-06 1.76e-06 1.09e-06 3.77e-06 1.88e-06 3.4e-06 1.51e-06 1.15e-06 3.1e-06 4.96e-06 4.22e-06 1.36e-06 7.65e-06 1.67e-06 2.33e-06 1.87e-06 4.47e-06 4.99e-06 2.77e-06 5.6e-07 5.55e-07 1.48e-06 1.96e-06 1.04e-06 9.63e-07 5.44e-07 8.26e-07 4.55e-07 3.05e-07 5.98e-06 6.31e-07 1.55e-07 3.74e-07 1.1e-06 1.14e-06 6.85e-07 4.38e-07
ENSG00000125703 ATG4C 43902 1.24e-05 1.51e-05 2.55e-06 8.5e-06 2.36e-06 6.28e-06 1.81e-05 2.18e-06 1.31e-05 6.78e-06 1.75e-05 6.49e-06 2.38e-05 5.28e-06 4.39e-06 8.14e-06 7.67e-06 1.06e-05 3.78e-06 3.16e-06 6.67e-06 1.28e-05 1.21e-05 3.66e-06 2.35e-05 4.53e-06 7.29e-06 5.29e-06 1.53e-05 1.32e-05 9.4e-06 9.95e-07 1.29e-06 3.64e-06 5.84e-06 2.82e-06 1.79e-06 2.37e-06 2.2e-06 1.69e-06 1.01e-06 1.86e-05 2.21e-06 1.97e-07 7.77e-07 2.15e-06 1.99e-06 6.83e-07 5e-07
ENSG00000142856 ITGB3BP -765687 3.02e-07 1.59e-07 7.97e-08 2.25e-07 1.02e-07 7.75e-08 2.1e-07 5.68e-08 1.54e-07 9.35e-08 1.62e-07 1.23e-07 2.24e-07 8.44e-08 6.12e-08 8.08e-08 4.35e-08 1.72e-07 8e-08 5.75e-08 1.18e-07 1.56e-07 1.58e-07 3.58e-08 2.17e-07 1.26e-07 1.29e-07 1.1e-07 1.32e-07 1.46e-07 1.14e-07 4.69e-08 3.8e-08 9.52e-08 7.44e-08 3.36e-08 6.24e-08 6.78e-08 5.95e-08 4.41e-08 5.48e-08 1.59e-07 3.59e-08 1.79e-08 3.3e-08 1.01e-08 7.52e-08 7.25e-09 4.66e-08
ENSG00000162607 USP1 391737 1.22e-06 9.39e-07 2.28e-07 6.06e-07 2.1e-07 4.49e-07 9.97e-07 2.88e-07 1.09e-06 3.76e-07 1.24e-06 5.7e-07 1.57e-06 2.57e-07 4.19e-07 5.81e-07 7.93e-07 5.33e-07 7.7e-07 4.68e-07 3.35e-07 9.67e-07 6.26e-07 4.62e-07 1.92e-06 2.47e-07 6.88e-07 5.31e-07 9.4e-07 1.2e-06 5.1e-07 4.94e-08 2.31e-07 4.54e-07 5.36e-07 4.41e-07 4.54e-07 2.78e-07 2.78e-07 9.81e-09 1.79e-07 1.22e-06 9.42e-08 9.66e-08 1.92e-07 1.17e-07 2.21e-07 1.44e-07 1.69e-07