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Genes within 1Mb (chr1:62827786:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765625 sc-eQTL 4.52e-01 0.0608 0.0806 0.615 B L1
ENSG00000088035 ALG6 -539789 sc-eQTL 8.80e-01 -0.0126 0.0837 0.615 B L1
ENSG00000116641 DOCK7 139400 sc-eQTL 7.55e-01 -0.0261 0.0836 0.615 B L1
ENSG00000125703 ATG4C 43654 sc-eQTL 2.73e-01 0.0637 0.058 0.615 B L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 1.75e-01 -0.125 0.0921 0.615 B L1
ENSG00000162607 USP1 391489 sc-eQTL 8.00e-01 -0.0204 0.0803 0.615 B L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.41e-01 -0.139 0.0943 0.615 B L1
ENSG00000079739 PGM1 -765625 sc-eQTL 9.80e-01 0.00177 0.0692 0.615 CD4T L1
ENSG00000088035 ALG6 -539789 sc-eQTL 8.63e-01 -0.0132 0.0764 0.615 CD4T L1
ENSG00000116641 DOCK7 139400 sc-eQTL 5.88e-01 0.042 0.0773 0.615 CD4T L1
ENSG00000125703 ATG4C 43654 sc-eQTL 7.84e-01 0.0171 0.0625 0.615 CD4T L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 6.40e-01 0.0415 0.0886 0.615 CD4T L1
ENSG00000162607 USP1 391489 sc-eQTL 7.80e-01 0.017 0.0606 0.615 CD4T L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 7.35e-02 0.142 0.079 0.615 CD4T L1
ENSG00000079739 PGM1 -765625 sc-eQTL 8.06e-01 0.0189 0.0768 0.615 CD8T L1
ENSG00000088035 ALG6 -539789 sc-eQTL 5.60e-01 -0.0494 0.0847 0.615 CD8T L1
ENSG00000116641 DOCK7 139400 sc-eQTL 9.27e-01 -0.00788 0.0858 0.615 CD8T L1
ENSG00000125703 ATG4C 43654 sc-eQTL 1.56e-02 0.196 0.0804 0.615 CD8T L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 8.95e-01 0.0121 0.0912 0.615 CD8T L1
ENSG00000162607 USP1 391489 sc-eQTL 7.20e-01 -0.0255 0.071 0.615 CD8T L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 5.42e-01 0.0555 0.0908 0.615 CD8T L1
ENSG00000079739 PGM1 -765625 sc-eQTL 5.78e-01 -0.0483 0.0867 0.615 DC L1
ENSG00000088035 ALG6 -539789 sc-eQTL 9.73e-01 -0.00302 0.0896 0.615 DC L1
ENSG00000116641 DOCK7 139400 sc-eQTL 9.24e-01 0.00877 0.0918 0.615 DC L1
ENSG00000125703 ATG4C 43654 sc-eQTL 7.67e-01 -0.0213 0.0718 0.615 DC L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.98e-01 0.000273 0.1 0.615 DC L1
ENSG00000162607 USP1 391489 sc-eQTL 7.21e-01 0.0313 0.0876 0.615 DC L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 4.34e-01 -0.0684 0.0873 0.615 DC L1
ENSG00000079739 PGM1 -765625 sc-eQTL 5.49e-01 0.05 0.0833 0.615 Mono L1
ENSG00000088035 ALG6 -539789 sc-eQTL 6.43e-02 -0.161 0.0863 0.615 Mono L1
ENSG00000116641 DOCK7 139400 sc-eQTL 3.84e-01 0.0733 0.084 0.615 Mono L1
ENSG00000125703 ATG4C 43654 sc-eQTL 2.65e-01 0.0634 0.0567 0.615 Mono L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 4.42e-01 0.0692 0.0898 0.615 Mono L1
ENSG00000162607 USP1 391489 sc-eQTL 4.98e-01 -0.0501 0.0737 0.615 Mono L1
ENSG00000240563 L1TD1 632937 sc-eQTL 2.53e-01 -0.0788 0.0687 0.615 Mono L1
ENSG00000079739 PGM1 -765625 sc-eQTL 3.99e-01 0.0609 0.0722 0.616 NK L1
ENSG00000088035 ALG6 -539789 sc-eQTL 7.74e-01 -0.0244 0.0847 0.616 NK L1
ENSG00000116641 DOCK7 139400 sc-eQTL 7.99e-02 0.122 0.0693 0.616 NK L1
ENSG00000125703 ATG4C 43654 sc-eQTL 8.24e-01 0.0167 0.075 0.616 NK L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.83e-01 -0.00196 0.0932 0.616 NK L1
ENSG00000162607 USP1 391489 sc-eQTL 9.77e-01 0.00237 0.0833 0.616 NK L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 7.31e-01 -0.0348 0.101 0.616 NK L1
ENSG00000079739 PGM1 -765625 sc-eQTL 2.33e-01 -0.0968 0.0809 0.615 Other_T L1
ENSG00000088035 ALG6 -539789 sc-eQTL 3.38e-01 0.0782 0.0814 0.615 Other_T L1
ENSG00000116641 DOCK7 139400 sc-eQTL 7.68e-01 0.0246 0.0833 0.615 Other_T L1
ENSG00000125703 ATG4C 43654 sc-eQTL 6.35e-03 0.195 0.0708 0.615 Other_T L1
ENSG00000142856 ITGB3BP -765935 sc-eQTL 1.78e-01 -0.086 0.0637 0.615 Other_T L1
ENSG00000162607 USP1 391489 sc-eQTL 7.89e-01 -0.0148 0.0554 0.615 Other_T L1
ENSG00000203965 EFCAB7 -695586 sc-eQTL 2.43e-01 0.115 0.0983 0.615 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765625 sc-eQTL 7.28e-01 -0.0387 0.111 0.612 B_Activated L2
ENSG00000088035 ALG6 -539789 sc-eQTL 6.09e-01 -0.0546 0.106 0.612 B_Activated L2
ENSG00000116641 DOCK7 139400 sc-eQTL 8.16e-01 -0.0231 0.0992 0.612 B_Activated L2
ENSG00000125703 ATG4C 43654 sc-eQTL 5.25e-01 -0.0664 0.104 0.612 B_Activated L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 4.01e-02 -0.208 0.101 0.612 B_Activated L2
ENSG00000162607 USP1 391489 sc-eQTL 8.87e-01 -0.0157 0.11 0.612 B_Activated L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 5.96e-01 0.0512 0.0964 0.612 B_Activated L2
ENSG00000079739 PGM1 -765625 sc-eQTL 3.79e-01 -0.0874 0.0991 0.616 B_Intermediate L2
ENSG00000088035 ALG6 -539789 sc-eQTL 8.11e-01 -0.0242 0.101 0.616 B_Intermediate L2
ENSG00000116641 DOCK7 139400 sc-eQTL 5.63e-01 0.0557 0.0962 0.616 B_Intermediate L2
ENSG00000125703 ATG4C 43654 sc-eQTL 6.45e-01 -0.0376 0.0815 0.616 B_Intermediate L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.43e-01 -0.00698 0.0971 0.616 B_Intermediate L2
ENSG00000162607 USP1 391489 sc-eQTL 8.28e-01 0.0211 0.0969 0.616 B_Intermediate L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 2.78e-01 -0.104 0.0959 0.616 B_Intermediate L2
ENSG00000079739 PGM1 -765625 sc-eQTL 9.42e-01 0.00714 0.0972 0.614 B_Memory L2
ENSG00000088035 ALG6 -539789 sc-eQTL 6.99e-01 -0.0382 0.0988 0.614 B_Memory L2
ENSG00000116641 DOCK7 139400 sc-eQTL 5.02e-01 0.0622 0.0926 0.614 B_Memory L2
ENSG00000125703 ATG4C 43654 sc-eQTL 6.44e-01 -0.0407 0.088 0.614 B_Memory L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 8.31e-01 -0.0216 0.101 0.614 B_Memory L2
ENSG00000162607 USP1 391489 sc-eQTL 3.51e-01 0.0949 0.101 0.614 B_Memory L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 8.54e-01 -0.0184 0.1 0.614 B_Memory L2
ENSG00000079739 PGM1 -765625 sc-eQTL 5.04e-01 0.0649 0.0969 0.615 B_Naive1 L2
ENSG00000088035 ALG6 -539789 sc-eQTL 4.56e-01 0.0726 0.0973 0.615 B_Naive1 L2
ENSG00000116641 DOCK7 139400 sc-eQTL 2.28e-01 -0.113 0.093 0.615 B_Naive1 L2
ENSG00000125703 ATG4C 43654 sc-eQTL 3.63e-02 0.15 0.0712 0.615 B_Naive1 L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 2.80e-01 -0.103 0.0951 0.615 B_Naive1 L2
ENSG00000162607 USP1 391489 sc-eQTL 2.21e-01 -0.103 0.0836 0.615 B_Naive1 L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.45e-01 -0.148 0.101 0.615 B_Naive1 L2
ENSG00000079739 PGM1 -765625 sc-eQTL 2.41e-01 0.113 0.0962 0.616 B_Naive2 L2
ENSG00000088035 ALG6 -539789 sc-eQTL 5.20e-01 -0.0647 0.101 0.616 B_Naive2 L2
ENSG00000116641 DOCK7 139400 sc-eQTL 6.95e-01 0.038 0.0967 0.616 B_Naive2 L2
ENSG00000125703 ATG4C 43654 sc-eQTL 7.73e-01 0.0269 0.0931 0.616 B_Naive2 L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 7.73e-01 -0.0291 0.101 0.616 B_Naive2 L2
ENSG00000162607 USP1 391489 sc-eQTL 7.14e-01 -0.0353 0.0961 0.616 B_Naive2 L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 8.34e-01 -0.021 0.1 0.616 B_Naive2 L2
ENSG00000079739 PGM1 -765625 sc-eQTL 4.40e-02 -0.195 0.0964 0.609 CD4_CTL L2
ENSG00000088035 ALG6 -539789 sc-eQTL 9.35e-01 0.00843 0.103 0.609 CD4_CTL L2
ENSG00000116641 DOCK7 139400 sc-eQTL 1.34e-01 0.135 0.0895 0.609 CD4_CTL L2
ENSG00000125703 ATG4C 43654 sc-eQTL 6.26e-01 0.0454 0.0931 0.609 CD4_CTL L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 5.58e-02 0.19 0.0987 0.609 CD4_CTL L2
ENSG00000162607 USP1 391489 sc-eQTL 9.25e-01 0.00897 0.0948 0.609 CD4_CTL L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.83e-01 -0.126 0.0942 0.609 CD4_CTL L2
ENSG00000079739 PGM1 -765625 sc-eQTL 6.50e-01 0.0353 0.0775 0.615 CD4_Naive L2
ENSG00000088035 ALG6 -539789 sc-eQTL 4.83e-01 0.0591 0.0842 0.615 CD4_Naive L2
ENSG00000116641 DOCK7 139400 sc-eQTL 7.33e-01 -0.0283 0.0828 0.615 CD4_Naive L2
ENSG00000125703 ATG4C 43654 sc-eQTL 8.10e-01 -0.0177 0.0732 0.615 CD4_Naive L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 6.18e-01 -0.0447 0.0894 0.615 CD4_Naive L2
ENSG00000162607 USP1 391489 sc-eQTL 4.22e-01 0.0549 0.0683 0.615 CD4_Naive L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.17e-02 0.223 0.0875 0.615 CD4_Naive L2
ENSG00000079739 PGM1 -765625 sc-eQTL 7.15e-01 0.0296 0.0811 0.615 CD4_TCM L2
ENSG00000088035 ALG6 -539789 sc-eQTL 5.40e-02 -0.181 0.0934 0.615 CD4_TCM L2
ENSG00000116641 DOCK7 139400 sc-eQTL 8.79e-01 -0.0128 0.0835 0.615 CD4_TCM L2
ENSG00000125703 ATG4C 43654 sc-eQTL 6.59e-01 0.0359 0.0813 0.615 CD4_TCM L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 2.51e-01 0.11 0.0955 0.615 CD4_TCM L2
ENSG00000162607 USP1 391489 sc-eQTL 6.58e-01 -0.0348 0.0786 0.615 CD4_TCM L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 3.26e-01 0.0912 0.0925 0.615 CD4_TCM L2
ENSG00000079739 PGM1 -765625 sc-eQTL 8.89e-01 0.0134 0.0955 0.615 CD4_TEM L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.01e-01 -0.0994 0.0958 0.615 CD4_TEM L2
ENSG00000116641 DOCK7 139400 sc-eQTL 9.66e-01 0.004 0.0936 0.615 CD4_TEM L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.64e-01 0.0666 0.0908 0.615 CD4_TEM L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 8.15e-01 0.022 0.0938 0.615 CD4_TEM L2
ENSG00000162607 USP1 391489 sc-eQTL 5.97e-01 0.047 0.0888 0.615 CD4_TEM L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 3.00e-01 -0.101 0.097 0.615 CD4_TEM L2
ENSG00000079739 PGM1 -765625 sc-eQTL 1.64e-01 0.122 0.087 0.615 CD8_CTL L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.24e-01 -0.0917 0.0927 0.615 CD8_CTL L2
ENSG00000116641 DOCK7 139400 sc-eQTL 1.91e-01 0.115 0.0879 0.615 CD8_CTL L2
ENSG00000125703 ATG4C 43654 sc-eQTL 2.17e-02 0.214 0.0927 0.615 CD8_CTL L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 6.48e-01 -0.0446 0.0976 0.615 CD8_CTL L2
ENSG00000162607 USP1 391489 sc-eQTL 6.26e-01 0.0426 0.0874 0.615 CD8_CTL L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 3.31e-01 0.0972 0.0998 0.615 CD8_CTL L2
ENSG00000079739 PGM1 -765625 sc-eQTL 7.96e-01 0.023 0.089 0.615 CD8_Naive L2
ENSG00000088035 ALG6 -539789 sc-eQTL 2.99e-01 -0.0958 0.092 0.615 CD8_Naive L2
ENSG00000116641 DOCK7 139400 sc-eQTL 3.13e-02 -0.204 0.0943 0.615 CD8_Naive L2
ENSG00000125703 ATG4C 43654 sc-eQTL 1.37e-01 0.136 0.091 0.615 CD8_Naive L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 7.36e-01 0.0313 0.0926 0.615 CD8_Naive L2
ENSG00000162607 USP1 391489 sc-eQTL 9.06e-01 0.00928 0.0783 0.615 CD8_Naive L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 5.34e-01 0.0543 0.0873 0.615 CD8_Naive L2
ENSG00000079739 PGM1 -765625 sc-eQTL 8.37e-03 -0.261 0.098 0.613 CD8_TCM L2
ENSG00000088035 ALG6 -539789 sc-eQTL 1.62e-01 0.141 0.1 0.613 CD8_TCM L2
ENSG00000116641 DOCK7 139400 sc-eQTL 7.85e-01 0.027 0.0985 0.613 CD8_TCM L2
ENSG00000125703 ATG4C 43654 sc-eQTL 8.66e-01 -0.0171 0.101 0.613 CD8_TCM L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.75e-01 0.0869 0.0978 0.613 CD8_TCM L2
ENSG00000162607 USP1 391489 sc-eQTL 9.47e-01 0.0063 0.0943 0.613 CD8_TCM L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 2.07e-02 0.23 0.0985 0.613 CD8_TCM L2
ENSG00000079739 PGM1 -765625 sc-eQTL 5.02e-01 0.0685 0.102 0.621 CD8_TEM L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.06e-02 0.22 0.101 0.621 CD8_TEM L2
ENSG00000116641 DOCK7 139400 sc-eQTL 8.65e-01 0.0169 0.0991 0.621 CD8_TEM L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.19e-02 0.193 0.0943 0.621 CD8_TEM L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 6.56e-01 0.046 0.103 0.621 CD8_TEM L2
ENSG00000162607 USP1 391489 sc-eQTL 3.28e-01 -0.0963 0.0982 0.621 CD8_TEM L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 9.64e-01 -0.00452 0.1 0.621 CD8_TEM L2
ENSG00000079739 PGM1 -765625 sc-eQTL 1.37e-01 -0.139 0.0932 0.613 MAIT L2
ENSG00000088035 ALG6 -539789 sc-eQTL 7.70e-01 0.0271 0.0927 0.613 MAIT L2
ENSG00000116641 DOCK7 139400 sc-eQTL 9.03e-01 -0.0109 0.0888 0.613 MAIT L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.30e-02 0.189 0.0927 0.613 MAIT L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 5.13e-01 -0.0614 0.0937 0.613 MAIT L2
ENSG00000162607 USP1 391489 sc-eQTL 3.60e-01 0.0852 0.0929 0.613 MAIT L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 2.51e-01 0.111 0.0963 0.613 MAIT L2
ENSG00000079739 PGM1 -765625 sc-eQTL 6.64e-01 -0.0413 0.095 0.613 NK_CD56bright L2
ENSG00000088035 ALG6 -539789 sc-eQTL 7.48e-01 -0.0314 0.0974 0.613 NK_CD56bright L2
ENSG00000116641 DOCK7 139400 sc-eQTL 2.77e-01 -0.0917 0.0841 0.613 NK_CD56bright L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.65e-01 -0.069 0.0942 0.613 NK_CD56bright L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.35e-01 -0.008 0.0982 0.613 NK_CD56bright L2
ENSG00000162607 USP1 391489 sc-eQTL 4.90e-01 0.07 0.101 0.613 NK_CD56bright L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.62e-01 -0.135 0.0964 0.613 NK_CD56bright L2
ENSG00000079739 PGM1 -765625 sc-eQTL 4.31e-01 -0.0591 0.075 0.614 NK_CD56dim L2
ENSG00000088035 ALG6 -539789 sc-eQTL 4.19e-01 -0.077 0.0951 0.614 NK_CD56dim L2
ENSG00000116641 DOCK7 139400 sc-eQTL 1.52e-01 0.118 0.0825 0.614 NK_CD56dim L2
ENSG00000125703 ATG4C 43654 sc-eQTL 5.75e-01 -0.0472 0.0841 0.614 NK_CD56dim L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 6.22e-01 -0.0473 0.0957 0.614 NK_CD56dim L2
ENSG00000162607 USP1 391489 sc-eQTL 9.31e-01 0.00808 0.0929 0.614 NK_CD56dim L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 8.63e-01 0.0179 0.103 0.614 NK_CD56dim L2
ENSG00000079739 PGM1 -765625 sc-eQTL 3.34e-01 0.0973 0.101 0.619 NK_HLA L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.29e-01 -0.102 0.104 0.619 NK_HLA L2
ENSG00000116641 DOCK7 139400 sc-eQTL 8.05e-01 0.0197 0.0799 0.619 NK_HLA L2
ENSG00000125703 ATG4C 43654 sc-eQTL 1.29e-01 0.141 0.0924 0.619 NK_HLA L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.91e-01 0.00109 0.0976 0.619 NK_HLA L2
ENSG00000162607 USP1 391489 sc-eQTL 8.08e-01 0.0248 0.102 0.619 NK_HLA L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 5.50e-01 0.0556 0.0928 0.619 NK_HLA L2
ENSG00000079739 PGM1 -765625 sc-eQTL 1.80e-01 0.109 0.0809 0.614 NK_cytokine L2
ENSG00000088035 ALG6 -539789 sc-eQTL 6.76e-02 0.167 0.0911 0.614 NK_cytokine L2
ENSG00000116641 DOCK7 139400 sc-eQTL 1.60e-01 0.119 0.0846 0.614 NK_cytokine L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.88e-01 0.0604 0.0869 0.614 NK_cytokine L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 7.75e-01 -0.0258 0.0901 0.614 NK_cytokine L2
ENSG00000162607 USP1 391489 sc-eQTL 9.35e-01 0.0077 0.0947 0.614 NK_cytokine L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 4.85e-01 0.067 0.0959 0.614 NK_cytokine L2
ENSG00000079739 PGM1 -765625 sc-eQTL 9.22e-01 -0.0107 0.11 0.619 PB L2
ENSG00000088035 ALG6 -539789 sc-eQTL 9.08e-01 0.0134 0.116 0.619 PB L2
ENSG00000116641 DOCK7 139400 sc-eQTL 8.58e-01 -0.0222 0.124 0.619 PB L2
ENSG00000125703 ATG4C 43654 sc-eQTL 2.96e-01 0.113 0.107 0.619 PB L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 7.31e-01 -0.0371 0.108 0.619 PB L2
ENSG00000162607 USP1 391489 sc-eQTL 8.53e-01 0.0199 0.107 0.619 PB L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 8.36e-01 0.0245 0.118 0.619 PB L2
ENSG00000079739 PGM1 -765625 sc-eQTL 9.47e-01 0.00578 0.0875 0.615 Pro_T L2
ENSG00000088035 ALG6 -539789 sc-eQTL 9.12e-01 -0.0098 0.0891 0.615 Pro_T L2
ENSG00000116641 DOCK7 139400 sc-eQTL 3.71e-01 0.0799 0.0892 0.615 Pro_T L2
ENSG00000125703 ATG4C 43654 sc-eQTL 9.55e-01 0.00443 0.0782 0.615 Pro_T L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.02e-02 -0.169 0.0776 0.615 Pro_T L2
ENSG00000162607 USP1 391489 sc-eQTL 6.69e-01 0.0231 0.0539 0.615 Pro_T L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 1.65e-01 0.127 0.0908 0.615 Pro_T L2
ENSG00000079739 PGM1 -765625 sc-eQTL 8.91e-01 0.0128 0.0927 0.615 Treg L2
ENSG00000088035 ALG6 -539789 sc-eQTL 7.53e-01 0.0313 0.0991 0.615 Treg L2
ENSG00000116641 DOCK7 139400 sc-eQTL 4.58e-01 0.0676 0.0909 0.615 Treg L2
ENSG00000125703 ATG4C 43654 sc-eQTL 5.97e-01 0.0492 0.093 0.615 Treg L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 2.72e-01 0.107 0.097 0.615 Treg L2
ENSG00000162607 USP1 391489 sc-eQTL 5.88e-01 -0.051 0.0941 0.615 Treg L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 6.63e-01 -0.0406 0.0931 0.615 Treg L2
ENSG00000079739 PGM1 -765625 sc-eQTL 4.04e-01 -0.0774 0.0925 0.61 cDC L2
ENSG00000088035 ALG6 -539789 sc-eQTL 7.61e-02 -0.166 0.0931 0.61 cDC L2
ENSG00000116641 DOCK7 139400 sc-eQTL 4.95e-01 0.063 0.0921 0.61 cDC L2
ENSG00000125703 ATG4C 43654 sc-eQTL 4.74e-01 -0.0573 0.0799 0.61 cDC L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.90e-01 0.0872 0.101 0.61 cDC L2
ENSG00000162607 USP1 391489 sc-eQTL 7.18e-01 0.0327 0.0903 0.61 cDC L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 9.82e-01 0.00187 0.0815 0.61 cDC L2
ENSG00000079739 PGM1 -765625 sc-eQTL 2.48e-01 0.0998 0.0862 0.615 cMono_IL1B L2
ENSG00000088035 ALG6 -539789 sc-eQTL 5.86e-02 -0.163 0.0858 0.615 cMono_IL1B L2
ENSG00000116641 DOCK7 139400 sc-eQTL 6.24e-01 0.0448 0.0912 0.615 cMono_IL1B L2
ENSG00000125703 ATG4C 43654 sc-eQTL 3.70e-01 0.0576 0.0641 0.615 cMono_IL1B L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.91e-01 0.078 0.0908 0.615 cMono_IL1B L2
ENSG00000162607 USP1 391489 sc-eQTL 8.54e-01 -0.0148 0.0802 0.615 cMono_IL1B L2
ENSG00000240563 L1TD1 632937 sc-eQTL 6.74e-01 -0.034 0.0805 0.615 cMono_IL1B L2
ENSG00000079739 PGM1 -765625 sc-eQTL 6.20e-01 0.0474 0.0954 0.615 cMono_S100A L2
ENSG00000088035 ALG6 -539789 sc-eQTL 1.56e-01 -0.137 0.0963 0.615 cMono_S100A L2
ENSG00000116641 DOCK7 139400 sc-eQTL 6.93e-01 0.0354 0.0897 0.615 cMono_S100A L2
ENSG00000125703 ATG4C 43654 sc-eQTL 7.73e-01 0.0224 0.0777 0.615 cMono_S100A L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.59e-01 0.0805 0.0875 0.615 cMono_S100A L2
ENSG00000162607 USP1 391489 sc-eQTL 5.32e-01 -0.0564 0.0901 0.615 cMono_S100A L2
ENSG00000240563 L1TD1 632937 sc-eQTL 3.28e-01 0.0734 0.0749 0.615 cMono_S100A L2
ENSG00000079739 PGM1 -765625 sc-eQTL 3.73e-01 -0.0969 0.109 0.615 gdT L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.70e-01 -0.104 0.116 0.615 gdT L2
ENSG00000116641 DOCK7 139400 sc-eQTL 3.85e-01 0.0989 0.114 0.615 gdT L2
ENSG00000125703 ATG4C 43654 sc-eQTL 5.67e-01 -0.0623 0.109 0.615 gdT L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.38e-01 -0.111 0.115 0.615 gdT L2
ENSG00000162607 USP1 391489 sc-eQTL 1.62e-01 -0.153 0.109 0.615 gdT L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 8.10e-01 0.0274 0.114 0.615 gdT L2
ENSG00000079739 PGM1 -765625 sc-eQTL 6.45e-01 0.0439 0.0951 0.618 intMono L2
ENSG00000088035 ALG6 -539789 sc-eQTL 4.91e-01 0.0611 0.0886 0.618 intMono L2
ENSG00000116641 DOCK7 139400 sc-eQTL 3.55e-01 0.0838 0.0904 0.618 intMono L2
ENSG00000125703 ATG4C 43654 sc-eQTL 6.47e-01 -0.0397 0.0864 0.618 intMono L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 5.49e-01 0.0572 0.0951 0.618 intMono L2
ENSG00000162607 USP1 391489 sc-eQTL 6.20e-01 -0.048 0.0968 0.618 intMono L2
ENSG00000240563 L1TD1 632937 sc-eQTL 2.52e-01 -0.0815 0.071 0.618 intMono L2
ENSG00000079739 PGM1 -765625 sc-eQTL 5.18e-01 -0.057 0.0879 0.62 ncMono L2
ENSG00000088035 ALG6 -539789 sc-eQTL 3.81e-01 0.0847 0.0965 0.62 ncMono L2
ENSG00000116641 DOCK7 139400 sc-eQTL 7.30e-01 -0.0328 0.0951 0.62 ncMono L2
ENSG00000125703 ATG4C 43654 sc-eQTL 3.95e-01 0.0756 0.0887 0.62 ncMono L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 8.21e-01 0.0211 0.093 0.62 ncMono L2
ENSG00000162607 USP1 391489 sc-eQTL 8.17e-01 -0.022 0.095 0.62 ncMono L2
ENSG00000240563 L1TD1 632937 sc-eQTL 3.52e-01 -0.0628 0.0672 0.62 ncMono L2
ENSG00000079739 PGM1 -765625 sc-eQTL 9.09e-01 -0.0123 0.107 0.616 pDC L2
ENSG00000088035 ALG6 -539789 sc-eQTL 6.97e-02 0.188 0.103 0.616 pDC L2
ENSG00000116641 DOCK7 139400 sc-eQTL 6.58e-01 -0.0471 0.106 0.616 pDC L2
ENSG00000125703 ATG4C 43654 sc-eQTL 3.48e-01 0.0895 0.0952 0.616 pDC L2
ENSG00000142856 ITGB3BP -765935 sc-eQTL 8.04e-02 -0.187 0.106 0.616 pDC L2
ENSG00000162607 USP1 391489 sc-eQTL 3.60e-01 0.0999 0.109 0.616 pDC L2
ENSG00000203965 EFCAB7 -695586 sc-eQTL 6.16e-01 -0.0476 0.0948 0.616 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -765625 sc-eQTL 4.51e-01 -0.0692 0.0916 0.615 B_Memory LOneK1K
ENSG00000088035 ALG6 -539789 sc-eQTL 4.41e-01 -0.0781 0.101 0.615 B_Memory LOneK1K
ENSG00000116641 DOCK7 139400 sc-eQTL 1.62e-01 0.123 0.0876 0.615 B_Memory LOneK1K
ENSG00000125703 ATG4C 43654 sc-eQTL 5.26e-01 -0.0452 0.0711 0.615 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.05e-01 -0.0959 0.0933 0.615 B_Memory LOneK1K
ENSG00000162607 USP1 391489 sc-eQTL 4.50e-01 0.0687 0.0907 0.615 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -695586 sc-eQTL 3.67e-01 -0.0879 0.0973 0.615 B_Memory LOneK1K
ENSG00000079739 PGM1 -765625 sc-eQTL 2.95e-01 0.0985 0.0939 0.615 B_Naive LOneK1K
ENSG00000088035 ALG6 -539789 sc-eQTL 6.52e-01 0.0437 0.0969 0.615 B_Naive LOneK1K
ENSG00000116641 DOCK7 139400 sc-eQTL 5.74e-01 -0.0509 0.0904 0.615 B_Naive LOneK1K
ENSG00000125703 ATG4C 43654 sc-eQTL 1.70e-02 0.164 0.0681 0.615 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -765935 sc-eQTL 3.11e-01 -0.0988 0.0974 0.615 B_Naive LOneK1K
ENSG00000162607 USP1 391489 sc-eQTL 3.18e-01 -0.0837 0.0837 0.615 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -695586 sc-eQTL 2.52e-01 -0.112 0.0978 0.615 B_Naive LOneK1K
ENSG00000079739 PGM1 -765625 sc-eQTL 4.58e-01 0.0653 0.0879 0.615 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -539789 sc-eQTL 3.14e-02 -0.183 0.0843 0.615 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 139400 sc-eQTL 5.50e-01 0.0514 0.0857 0.615 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 43654 sc-eQTL 2.76e-01 0.0646 0.0591 0.615 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -765935 sc-eQTL 2.62e-01 0.0983 0.0875 0.615 CD14_Mono LOneK1K
ENSG00000162607 USP1 391489 sc-eQTL 4.15e-01 -0.0611 0.0748 0.615 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 632937 sc-eQTL 8.08e-01 0.0197 0.0812 0.615 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -765625 sc-eQTL 7.46e-01 0.0273 0.0843 0.616 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -539789 sc-eQTL 2.38e-01 0.113 0.0955 0.616 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 139400 sc-eQTL 6.94e-01 0.0373 0.0947 0.616 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 43654 sc-eQTL 9.34e-01 0.00666 0.0808 0.616 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -765935 sc-eQTL 5.25e-01 0.0597 0.0937 0.616 CD16_Mono LOneK1K
ENSG00000162607 USP1 391489 sc-eQTL 5.06e-01 -0.0587 0.088 0.616 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 632937 sc-eQTL 5.29e-02 -0.116 0.0596 0.616 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -765625 sc-eQTL 4.55e-01 0.0549 0.0734 0.614 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -539789 sc-eQTL 9.95e-01 -0.000534 0.0882 0.614 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 139400 sc-eQTL 3.83e-02 0.163 0.0782 0.614 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 43654 sc-eQTL 9.86e-01 0.00138 0.0789 0.614 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -765935 sc-eQTL 9.31e-01 -0.00813 0.0935 0.614 NK_CD56dim LOneK1K
ENSG00000162607 USP1 391489 sc-eQTL 6.45e-01 -0.0391 0.0848 0.614 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -695586 sc-eQTL 7.01e-01 0.0397 0.103 0.614 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 139418 eQTL 4.83e-07 0.114 0.0224 0.0 0.0 0.349
ENSG00000125703 ATG4C 43654 eQTL 5.04e-06 0.0783 0.0171 0.0166 0.016 0.349
ENSG00000132855 ANGPTL3 230299 pQTL 0.0171 0.0719 0.0301 0.0 0.0 0.356
ENSG00000142856 ITGB3BP -765935 eQTL 0.00345 -0.0877 0.0299 0.0 0.0 0.349
ENSG00000162607 USP1 391489 eQTL 0.000626 0.0451 0.0131 0.0 0.0 0.349

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 139418 3.06e-06 2.81e-06 2.31e-07 1.85e-06 4.98e-07 8.09e-07 1.94e-06 6.19e-07 1.95e-06 9.75e-07 2.55e-06 1.4e-06 3.55e-06 1.37e-06 6.23e-07 1.45e-06 1.09e-06 2.2e-06 7.09e-07 1.09e-06 8.63e-07 2.88e-06 2.35e-06 1e-06 3.92e-06 1.36e-06 1.27e-06 1.44e-06 1.94e-06 1.98e-06 1.89e-06 2.49e-07 4.76e-07 1.25e-06 1.06e-06 8.79e-07 7.83e-07 3.92e-07 8.73e-07 2.58e-07 2.88e-07 3.49e-06 4.85e-07 1.74e-07 3.67e-07 3.29e-07 3.78e-07 2.7e-07 2.61e-07
ENSG00000125703 ATG4C 43654 6.93e-06 9.25e-06 9.81e-07 4e-06 1.83e-06 3.46e-06 9.56e-06 1.43e-06 6.16e-06 4.24e-06 1.04e-05 4.86e-06 1.18e-05 3.85e-06 1.66e-06 4.62e-06 3.64e-06 4.11e-06 2.15e-06 2.07e-06 3.32e-06 7.57e-06 6.67e-06 2.41e-06 1.18e-05 2.57e-06 3.73e-06 2.43e-06 7e-06 7.95e-06 4.4e-06 4.31e-07 8.08e-07 2.74e-06 3.19e-06 2.1e-06 1.11e-06 9.08e-07 1.38e-06 8.46e-07 7.83e-07 9.24e-06 8.79e-07 1.81e-07 7.41e-07 1.02e-06 1e-06 6.58e-07 5.74e-07
ENSG00000142856 ITGB3BP -765935 2.74e-07 1.3e-07 4.48e-08 1.81e-07 9.25e-08 9.76e-08 1.53e-07 5.37e-08 1.44e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.76e-08 6.17e-08 7.3e-08 3.98e-08 1.26e-07 5.97e-08 4.1e-08 1.13e-07 1.27e-07 1.39e-07 2.95e-08 1.4e-07 1.14e-07 1.06e-07 9.65e-08 1.09e-07 1.07e-07 9.64e-08 3.68e-08 3.61e-08 8.25e-08 8.38e-08 3.62e-08 5.22e-08 9.26e-08 6.55e-08 3.92e-08 5.43e-08 1.36e-07 5.24e-08 7.61e-09 3.84e-08 1.84e-08 1.21e-07 3.83e-09 4.94e-08
ENSG00000162607 USP1 391489 8.25e-07 4.93e-07 1.03e-07 3.58e-07 1.07e-07 1.85e-07 5.13e-07 9.78e-08 2.81e-07 2.12e-07 5.29e-07 3.08e-07 6.08e-07 1.17e-07 1.45e-07 1.92e-07 1.73e-07 3.58e-07 1.81e-07 1.17e-07 1.8e-07 2.99e-07 3.07e-07 1.25e-07 6.59e-07 2.4e-07 2.23e-07 2.18e-07 2.84e-07 4.27e-07 2.43e-07 7.71e-08 5.68e-08 1.37e-07 2.61e-07 7.92e-08 1.18e-07 6.89e-08 4.17e-08 5.77e-08 5.43e-08 4.68e-07 2.84e-08 1.05e-08 1.15e-07 1.91e-08 9.98e-08 2.89e-09 5.16e-08