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Genes within 1Mb (chr1:62827199:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -766212 sc-eQTL 2.15e-01 0.0983 0.079 0.624 B L1
ENSG00000088035 ALG6 -540376 sc-eQTL 6.15e-01 0.0413 0.0821 0.624 B L1
ENSG00000116641 DOCK7 138813 sc-eQTL 7.07e-01 -0.0309 0.0821 0.624 B L1
ENSG00000125703 ATG4C 43067 sc-eQTL 3.04e-01 0.0587 0.0569 0.624 B L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 2.67e-01 -0.101 0.0906 0.624 B L1
ENSG00000162607 USP1 390902 sc-eQTL 7.44e-01 -0.0257 0.0788 0.624 B L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.22e-01 -0.144 0.0925 0.624 B L1
ENSG00000079739 PGM1 -766212 sc-eQTL 8.34e-01 -0.0143 0.068 0.624 CD4T L1
ENSG00000088035 ALG6 -540376 sc-eQTL 9.01e-01 0.0094 0.0751 0.624 CD4T L1
ENSG00000116641 DOCK7 138813 sc-eQTL 9.83e-01 -0.00158 0.076 0.624 CD4T L1
ENSG00000125703 ATG4C 43067 sc-eQTL 3.98e-01 -0.052 0.0613 0.624 CD4T L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.21e-01 0.0431 0.0871 0.624 CD4T L1
ENSG00000162607 USP1 390902 sc-eQTL 9.70e-01 0.00227 0.0596 0.624 CD4T L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.88e-01 0.103 0.0779 0.624 CD4T L1
ENSG00000079739 PGM1 -766212 sc-eQTL 7.07e-01 0.0286 0.0758 0.624 CD8T L1
ENSG00000088035 ALG6 -540376 sc-eQTL 9.76e-01 -0.00257 0.0836 0.624 CD8T L1
ENSG00000116641 DOCK7 138813 sc-eQTL 7.01e-01 0.0325 0.0847 0.624 CD8T L1
ENSG00000125703 ATG4C 43067 sc-eQTL 1.17e-02 0.202 0.0793 0.624 CD8T L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 9.14e-01 -0.00968 0.09 0.624 CD8T L1
ENSG00000162607 USP1 390902 sc-eQTL 3.32e-01 -0.068 0.07 0.624 CD8T L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 7.73e-01 0.026 0.0897 0.624 CD8T L1
ENSG00000079739 PGM1 -766212 sc-eQTL 3.94e-01 -0.0726 0.085 0.624 DC L1
ENSG00000088035 ALG6 -540376 sc-eQTL 8.46e-01 -0.0171 0.0879 0.624 DC L1
ENSG00000116641 DOCK7 138813 sc-eQTL 8.59e-01 0.016 0.0901 0.624 DC L1
ENSG00000125703 ATG4C 43067 sc-eQTL 9.35e-01 -0.00575 0.0705 0.624 DC L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.93e-01 -0.039 0.0985 0.624 DC L1
ENSG00000162607 USP1 390902 sc-eQTL 5.05e-01 0.0574 0.086 0.624 DC L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 3.56e-01 -0.0792 0.0856 0.624 DC L1
ENSG00000079739 PGM1 -766212 sc-eQTL 9.63e-01 0.00382 0.082 0.624 Mono L1
ENSG00000088035 ALG6 -540376 sc-eQTL 8.23e-02 -0.148 0.085 0.624 Mono L1
ENSG00000116641 DOCK7 138813 sc-eQTL 6.24e-01 0.0406 0.0827 0.624 Mono L1
ENSG00000125703 ATG4C 43067 sc-eQTL 3.11e-01 0.0567 0.0558 0.624 Mono L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.75e-01 0.0632 0.0883 0.624 Mono L1
ENSG00000162607 USP1 390902 sc-eQTL 2.62e-01 -0.0814 0.0724 0.624 Mono L1
ENSG00000240563 L1TD1 632350 sc-eQTL 3.62e-01 -0.0618 0.0676 0.624 Mono L1
ENSG00000079739 PGM1 -766212 sc-eQTL 1.58e-01 0.0996 0.0703 0.624 NK L1
ENSG00000088035 ALG6 -540376 sc-eQTL 7.10e-01 -0.0308 0.0828 0.624 NK L1
ENSG00000116641 DOCK7 138813 sc-eQTL 8.43e-02 0.117 0.0677 0.624 NK L1
ENSG00000125703 ATG4C 43067 sc-eQTL 7.63e-01 0.0221 0.0732 0.624 NK L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.57e-01 -0.0405 0.091 0.624 NK L1
ENSG00000162607 USP1 390902 sc-eQTL 7.31e-01 -0.028 0.0813 0.624 NK L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 8.33e-01 0.0209 0.0988 0.624 NK L1
ENSG00000079739 PGM1 -766212 sc-eQTL 2.59e-01 -0.0911 0.0805 0.624 Other_T L1
ENSG00000088035 ALG6 -540376 sc-eQTL 4.39e-01 0.0628 0.081 0.624 Other_T L1
ENSG00000116641 DOCK7 138813 sc-eQTL 9.33e-01 -0.00701 0.0828 0.624 Other_T L1
ENSG00000125703 ATG4C 43067 sc-eQTL 4.85e-03 0.2 0.0703 0.624 Other_T L1
ENSG00000142856 ITGB3BP -766522 sc-eQTL 3.69e-01 -0.0571 0.0634 0.624 Other_T L1
ENSG00000162607 USP1 390902 sc-eQTL 8.05e-01 -0.0136 0.0551 0.624 Other_T L1
ENSG00000203965 EFCAB7 -696173 sc-eQTL 2.44e-01 0.114 0.0977 0.624 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -766212 sc-eQTL 7.24e-01 -0.0385 0.109 0.62 B_Activated L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.14e-01 -0.0853 0.104 0.62 B_Activated L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.32e-01 -0.0207 0.0972 0.62 B_Activated L2
ENSG00000125703 ATG4C 43067 sc-eQTL 4.16e-01 -0.0832 0.102 0.62 B_Activated L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 3.51e-02 -0.209 0.0986 0.62 B_Activated L2
ENSG00000162607 USP1 390902 sc-eQTL 7.22e-01 -0.0386 0.108 0.62 B_Activated L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 7.65e-01 0.0283 0.0945 0.62 B_Activated L2
ENSG00000079739 PGM1 -766212 sc-eQTL 7.48e-01 -0.0311 0.0968 0.624 B_Intermediate L2
ENSG00000088035 ALG6 -540376 sc-eQTL 9.03e-01 0.012 0.0984 0.624 B_Intermediate L2
ENSG00000116641 DOCK7 138813 sc-eQTL 5.81e-01 0.0519 0.0939 0.624 B_Intermediate L2
ENSG00000125703 ATG4C 43067 sc-eQTL 5.90e-01 -0.0429 0.0795 0.624 B_Intermediate L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 8.34e-01 0.0199 0.0947 0.624 B_Intermediate L2
ENSG00000162607 USP1 390902 sc-eQTL 6.03e-01 0.0492 0.0945 0.624 B_Intermediate L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.07e-01 -0.151 0.0933 0.624 B_Intermediate L2
ENSG00000079739 PGM1 -766212 sc-eQTL 6.95e-01 0.037 0.0942 0.623 B_Memory L2
ENSG00000088035 ALG6 -540376 sc-eQTL 7.26e-01 -0.0337 0.0958 0.623 B_Memory L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.99e-01 -0.0114 0.0899 0.623 B_Memory L2
ENSG00000125703 ATG4C 43067 sc-eQTL 5.69e-01 -0.0486 0.0854 0.623 B_Memory L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 7.24e-01 -0.0346 0.0978 0.623 B_Memory L2
ENSG00000162607 USP1 390902 sc-eQTL 3.67e-01 0.089 0.0984 0.623 B_Memory L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 5.07e-01 -0.0645 0.097 0.623 B_Memory L2
ENSG00000079739 PGM1 -766212 sc-eQTL 2.43e-01 0.111 0.0945 0.624 B_Naive1 L2
ENSG00000088035 ALG6 -540376 sc-eQTL 1.20e-01 0.148 0.0946 0.624 B_Naive1 L2
ENSG00000116641 DOCK7 138813 sc-eQTL 2.44e-01 -0.106 0.0909 0.624 B_Naive1 L2
ENSG00000125703 ATG4C 43067 sc-eQTL 4.92e-02 0.138 0.0696 0.624 B_Naive1 L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.52e-01 -0.0701 0.093 0.624 B_Naive1 L2
ENSG00000162607 USP1 390902 sc-eQTL 1.97e-01 -0.106 0.0816 0.624 B_Naive1 L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.56e-01 -0.141 0.0989 0.624 B_Naive1 L2
ENSG00000079739 PGM1 -766212 sc-eQTL 2.17e-01 0.116 0.0938 0.624 B_Naive2 L2
ENSG00000088035 ALG6 -540376 sc-eQTL 7.79e-01 -0.0276 0.0981 0.624 B_Naive2 L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.16e-01 0.022 0.0943 0.624 B_Naive2 L2
ENSG00000125703 ATG4C 43067 sc-eQTL 5.99e-01 0.0478 0.0908 0.624 B_Naive2 L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 9.33e-01 -0.00826 0.0985 0.624 B_Naive2 L2
ENSG00000162607 USP1 390902 sc-eQTL 9.00e-01 -0.0117 0.0937 0.624 B_Naive2 L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 9.04e-01 -0.0118 0.098 0.624 B_Naive2 L2
ENSG00000079739 PGM1 -766212 sc-eQTL 5.79e-02 -0.18 0.0945 0.62 CD4_CTL L2
ENSG00000088035 ALG6 -540376 sc-eQTL 9.62e-01 0.00482 0.101 0.62 CD4_CTL L2
ENSG00000116641 DOCK7 138813 sc-eQTL 7.84e-02 0.155 0.0874 0.62 CD4_CTL L2
ENSG00000125703 ATG4C 43067 sc-eQTL 4.28e-01 0.0722 0.091 0.62 CD4_CTL L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 1.53e-01 0.139 0.097 0.62 CD4_CTL L2
ENSG00000162607 USP1 390902 sc-eQTL 5.80e-01 -0.0514 0.0927 0.62 CD4_CTL L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 3.58e-01 -0.0853 0.0925 0.62 CD4_CTL L2
ENSG00000079739 PGM1 -766212 sc-eQTL 6.89e-01 0.0305 0.0763 0.624 CD4_Naive L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.70e-01 0.0599 0.0828 0.624 CD4_Naive L2
ENSG00000116641 DOCK7 138813 sc-eQTL 4.05e-01 -0.0679 0.0813 0.624 CD4_Naive L2
ENSG00000125703 ATG4C 43067 sc-eQTL 3.18e-01 -0.0719 0.0718 0.624 CD4_Naive L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 7.43e-01 -0.0289 0.088 0.624 CD4_Naive L2
ENSG00000162607 USP1 390902 sc-eQTL 6.72e-01 0.0285 0.0672 0.624 CD4_Naive L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 4.57e-02 0.174 0.0866 0.624 CD4_Naive L2
ENSG00000079739 PGM1 -766212 sc-eQTL 9.71e-01 0.00295 0.0797 0.624 CD4_TCM L2
ENSG00000088035 ALG6 -540376 sc-eQTL 1.14e-01 -0.146 0.092 0.624 CD4_TCM L2
ENSG00000116641 DOCK7 138813 sc-eQTL 7.90e-01 -0.0219 0.082 0.624 CD4_TCM L2
ENSG00000125703 ATG4C 43067 sc-eQTL 6.76e-01 0.0334 0.0798 0.624 CD4_TCM L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 2.13e-01 0.117 0.0937 0.624 CD4_TCM L2
ENSG00000162607 USP1 390902 sc-eQTL 8.52e-01 -0.0144 0.0771 0.624 CD4_TCM L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 4.05e-01 0.0759 0.0909 0.624 CD4_TCM L2
ENSG00000079739 PGM1 -766212 sc-eQTL 4.79e-01 -0.067 0.0944 0.624 CD4_TEM L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.86e-01 -0.0663 0.0949 0.624 CD4_TEM L2
ENSG00000116641 DOCK7 138813 sc-eQTL 9.84e-01 0.0019 0.0926 0.624 CD4_TEM L2
ENSG00000125703 ATG4C 43067 sc-eQTL 6.80e-01 -0.0371 0.0899 0.624 CD4_TEM L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 9.84e-01 0.0019 0.0929 0.624 CD4_TEM L2
ENSG00000162607 USP1 390902 sc-eQTL 7.10e-01 0.0328 0.088 0.624 CD4_TEM L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 2.64e-01 -0.108 0.096 0.624 CD4_TEM L2
ENSG00000079739 PGM1 -766212 sc-eQTL 3.10e-01 0.0883 0.0867 0.624 CD8_CTL L2
ENSG00000088035 ALG6 -540376 sc-eQTL 7.26e-01 -0.0325 0.0924 0.624 CD8_CTL L2
ENSG00000116641 DOCK7 138813 sc-eQTL 1.00e-01 0.144 0.0872 0.624 CD8_CTL L2
ENSG00000125703 ATG4C 43067 sc-eQTL 1.49e-02 0.226 0.0921 0.624 CD8_CTL L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.37e-01 -0.0458 0.097 0.624 CD8_CTL L2
ENSG00000162607 USP1 390902 sc-eQTL 8.49e-01 0.0166 0.087 0.624 CD8_CTL L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 5.04e-01 0.0665 0.0993 0.624 CD8_CTL L2
ENSG00000079739 PGM1 -766212 sc-eQTL 5.01e-01 0.0589 0.0875 0.624 CD8_Naive L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.75e-01 -0.0648 0.0906 0.624 CD8_Naive L2
ENSG00000116641 DOCK7 138813 sc-eQTL 1.70e-01 -0.129 0.0933 0.624 CD8_Naive L2
ENSG00000125703 ATG4C 43067 sc-eQTL 1.23e-01 0.138 0.0895 0.624 CD8_Naive L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 9.17e-01 -0.00951 0.0911 0.624 CD8_Naive L2
ENSG00000162607 USP1 390902 sc-eQTL 6.86e-01 -0.0311 0.077 0.624 CD8_Naive L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 6.25e-01 0.042 0.0859 0.624 CD8_Naive L2
ENSG00000079739 PGM1 -766212 sc-eQTL 3.01e-03 -0.288 0.0957 0.623 CD8_TCM L2
ENSG00000088035 ALG6 -540376 sc-eQTL 9.15e-02 0.167 0.0984 0.623 CD8_TCM L2
ENSG00000116641 DOCK7 138813 sc-eQTL 2.76e-01 0.105 0.0965 0.623 CD8_TCM L2
ENSG00000125703 ATG4C 43067 sc-eQTL 8.12e-01 -0.0236 0.0989 0.623 CD8_TCM L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 5.80e-01 0.0533 0.0961 0.623 CD8_TCM L2
ENSG00000162607 USP1 390902 sc-eQTL 8.56e-01 -0.0168 0.0925 0.623 CD8_TCM L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 7.53e-02 0.174 0.0972 0.623 CD8_TCM L2
ENSG00000079739 PGM1 -766212 sc-eQTL 3.87e-01 0.0875 0.101 0.63 CD8_TEM L2
ENSG00000088035 ALG6 -540376 sc-eQTL 2.12e-02 0.233 0.1 0.63 CD8_TEM L2
ENSG00000116641 DOCK7 138813 sc-eQTL 6.82e-01 0.0403 0.0983 0.63 CD8_TEM L2
ENSG00000125703 ATG4C 43067 sc-eQTL 7.54e-02 0.168 0.0938 0.63 CD8_TEM L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 5.60e-01 0.0598 0.102 0.63 CD8_TEM L2
ENSG00000162607 USP1 390902 sc-eQTL 2.33e-01 -0.116 0.0973 0.63 CD8_TEM L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 6.62e-01 -0.0434 0.0992 0.63 CD8_TEM L2
ENSG00000079739 PGM1 -766212 sc-eQTL 1.36e-01 -0.136 0.091 0.623 MAIT L2
ENSG00000088035 ALG6 -540376 sc-eQTL 7.69e-01 -0.0266 0.0906 0.623 MAIT L2
ENSG00000116641 DOCK7 138813 sc-eQTL 7.78e-01 -0.0245 0.0868 0.623 MAIT L2
ENSG00000125703 ATG4C 43067 sc-eQTL 7.56e-03 0.243 0.09 0.623 MAIT L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 8.66e-01 -0.0155 0.0917 0.623 MAIT L2
ENSG00000162607 USP1 390902 sc-eQTL 5.68e-01 0.052 0.0909 0.623 MAIT L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 2.63e-01 0.106 0.0941 0.623 MAIT L2
ENSG00000079739 PGM1 -766212 sc-eQTL 7.20e-01 -0.0335 0.0933 0.622 NK_CD56bright L2
ENSG00000088035 ALG6 -540376 sc-eQTL 8.21e-01 -0.0217 0.0957 0.622 NK_CD56bright L2
ENSG00000116641 DOCK7 138813 sc-eQTL 1.06e-01 -0.134 0.0824 0.622 NK_CD56bright L2
ENSG00000125703 ATG4C 43067 sc-eQTL 3.05e-01 -0.095 0.0924 0.622 NK_CD56bright L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 7.56e-01 -0.0301 0.0964 0.622 NK_CD56bright L2
ENSG00000162607 USP1 390902 sc-eQTL 5.77e-01 0.0555 0.0994 0.622 NK_CD56bright L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.64e-01 -0.132 0.0947 0.622 NK_CD56bright L2
ENSG00000079739 PGM1 -766212 sc-eQTL 9.00e-01 -0.00927 0.0735 0.623 NK_CD56dim L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.49e-01 -0.0708 0.0932 0.623 NK_CD56dim L2
ENSG00000116641 DOCK7 138813 sc-eQTL 1.74e-01 0.11 0.0808 0.623 NK_CD56dim L2
ENSG00000125703 ATG4C 43067 sc-eQTL 7.04e-01 -0.0314 0.0824 0.623 NK_CD56dim L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.70e-01 -0.0679 0.0937 0.623 NK_CD56dim L2
ENSG00000162607 USP1 390902 sc-eQTL 9.97e-01 -0.000324 0.091 0.623 NK_CD56dim L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 6.16e-01 0.0509 0.101 0.623 NK_CD56dim L2
ENSG00000079739 PGM1 -766212 sc-eQTL 1.94e-01 0.129 0.0988 0.628 NK_HLA L2
ENSG00000088035 ALG6 -540376 sc-eQTL 1.73e-01 -0.14 0.102 0.628 NK_HLA L2
ENSG00000116641 DOCK7 138813 sc-eQTL 5.21e-01 0.0505 0.0786 0.628 NK_HLA L2
ENSG00000125703 ATG4C 43067 sc-eQTL 1.00e-01 0.15 0.0909 0.628 NK_HLA L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 8.15e-01 -0.0224 0.096 0.628 NK_HLA L2
ENSG00000162607 USP1 390902 sc-eQTL 9.28e-01 -0.00905 0.101 0.628 NK_HLA L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 2.47e-01 0.106 0.0912 0.628 NK_HLA L2
ENSG00000079739 PGM1 -766212 sc-eQTL 9.77e-02 0.132 0.0793 0.623 NK_cytokine L2
ENSG00000088035 ALG6 -540376 sc-eQTL 9.47e-02 0.15 0.0896 0.623 NK_cytokine L2
ENSG00000116641 DOCK7 138813 sc-eQTL 2.66e-02 0.184 0.0826 0.623 NK_cytokine L2
ENSG00000125703 ATG4C 43067 sc-eQTL 4.61e-01 0.063 0.0853 0.623 NK_cytokine L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.24e-01 -0.0434 0.0885 0.623 NK_cytokine L2
ENSG00000162607 USP1 390902 sc-eQTL 7.90e-01 -0.0249 0.093 0.623 NK_cytokine L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 2.50e-01 0.108 0.094 0.623 NK_cytokine L2
ENSG00000079739 PGM1 -766212 sc-eQTL 7.66e-01 -0.0327 0.11 0.63 PB L2
ENSG00000088035 ALG6 -540376 sc-eQTL 9.93e-01 -0.00101 0.115 0.63 PB L2
ENSG00000116641 DOCK7 138813 sc-eQTL 7.66e-01 -0.0367 0.123 0.63 PB L2
ENSG00000125703 ATG4C 43067 sc-eQTL 2.85e-01 0.115 0.107 0.63 PB L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 7.53e-01 -0.0337 0.107 0.63 PB L2
ENSG00000162607 USP1 390902 sc-eQTL 9.28e-01 -0.00964 0.107 0.63 PB L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 9.04e-01 0.0142 0.118 0.63 PB L2
ENSG00000079739 PGM1 -766212 sc-eQTL 5.85e-01 0.0476 0.0869 0.624 Pro_T L2
ENSG00000088035 ALG6 -540376 sc-eQTL 8.63e-01 -0.0153 0.0885 0.624 Pro_T L2
ENSG00000116641 DOCK7 138813 sc-eQTL 4.24e-01 0.0711 0.0887 0.624 Pro_T L2
ENSG00000125703 ATG4C 43067 sc-eQTL 8.57e-01 -0.014 0.0777 0.624 Pro_T L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 8.83e-02 -0.133 0.0774 0.624 Pro_T L2
ENSG00000162607 USP1 390902 sc-eQTL 7.30e-01 0.0185 0.0536 0.624 Pro_T L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.41e-01 0.133 0.0901 0.624 Pro_T L2
ENSG00000079739 PGM1 -766212 sc-eQTL 5.37e-01 0.0566 0.0916 0.624 Treg L2
ENSG00000088035 ALG6 -540376 sc-eQTL 7.99e-01 0.025 0.0981 0.624 Treg L2
ENSG00000116641 DOCK7 138813 sc-eQTL 6.30e-01 0.0434 0.09 0.624 Treg L2
ENSG00000125703 ATG4C 43067 sc-eQTL 9.17e-01 0.00956 0.092 0.624 Treg L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.37e-01 0.0454 0.0962 0.624 Treg L2
ENSG00000162607 USP1 390902 sc-eQTL 5.49e-01 -0.0559 0.093 0.624 Treg L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 4.65e-01 -0.0673 0.092 0.624 Treg L2
ENSG00000079739 PGM1 -766212 sc-eQTL 2.75e-01 -0.0998 0.0912 0.622 cDC L2
ENSG00000088035 ALG6 -540376 sc-eQTL 4.04e-02 -0.189 0.0917 0.622 cDC L2
ENSG00000116641 DOCK7 138813 sc-eQTL 7.25e-01 0.032 0.091 0.622 cDC L2
ENSG00000125703 ATG4C 43067 sc-eQTL 6.87e-01 -0.0318 0.079 0.622 cDC L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 7.44e-01 0.0327 0.1 0.622 cDC L2
ENSG00000162607 USP1 390902 sc-eQTL 4.51e-01 0.0673 0.0891 0.622 cDC L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 7.54e-01 -0.0253 0.0805 0.622 cDC L2
ENSG00000079739 PGM1 -766212 sc-eQTL 4.64e-01 0.0625 0.0852 0.624 cMono_IL1B L2
ENSG00000088035 ALG6 -540376 sc-eQTL 3.53e-02 -0.179 0.0845 0.624 cMono_IL1B L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.28e-01 0.0196 0.0901 0.624 cMono_IL1B L2
ENSG00000125703 ATG4C 43067 sc-eQTL 3.52e-01 0.059 0.0632 0.624 cMono_IL1B L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.28e-01 0.0711 0.0896 0.624 cMono_IL1B L2
ENSG00000162607 USP1 390902 sc-eQTL 4.96e-01 -0.0539 0.0791 0.624 cMono_IL1B L2
ENSG00000240563 L1TD1 632350 sc-eQTL 6.72e-01 -0.0337 0.0795 0.624 cMono_IL1B L2
ENSG00000079739 PGM1 -766212 sc-eQTL 8.79e-01 0.0144 0.0946 0.624 cMono_S100A L2
ENSG00000088035 ALG6 -540376 sc-eQTL 2.06e-01 -0.121 0.0955 0.624 cMono_S100A L2
ENSG00000116641 DOCK7 138813 sc-eQTL 9.07e-01 0.0104 0.0889 0.624 cMono_S100A L2
ENSG00000125703 ATG4C 43067 sc-eQTL 8.94e-01 -0.0102 0.077 0.624 cMono_S100A L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 5.76e-01 0.0486 0.0868 0.624 cMono_S100A L2
ENSG00000162607 USP1 390902 sc-eQTL 4.23e-01 -0.0717 0.0893 0.624 cMono_S100A L2
ENSG00000240563 L1TD1 632350 sc-eQTL 2.22e-01 0.0908 0.0741 0.624 cMono_S100A L2
ENSG00000079739 PGM1 -766212 sc-eQTL 4.40e-01 -0.0835 0.108 0.624 gdT L2
ENSG00000088035 ALG6 -540376 sc-eQTL 3.89e-01 -0.0993 0.115 0.624 gdT L2
ENSG00000116641 DOCK7 138813 sc-eQTL 5.26e-01 0.0716 0.113 0.624 gdT L2
ENSG00000125703 ATG4C 43067 sc-eQTL 8.76e-01 -0.0169 0.108 0.624 gdT L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 3.71e-01 -0.103 0.114 0.624 gdT L2
ENSG00000162607 USP1 390902 sc-eQTL 1.52e-01 -0.155 0.108 0.624 gdT L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 9.16e-01 0.0119 0.113 0.624 gdT L2
ENSG00000079739 PGM1 -766212 sc-eQTL 9.86e-01 0.00168 0.0942 0.627 intMono L2
ENSG00000088035 ALG6 -540376 sc-eQTL 3.77e-01 0.0775 0.0875 0.627 intMono L2
ENSG00000116641 DOCK7 138813 sc-eQTL 5.48e-01 0.0538 0.0895 0.627 intMono L2
ENSG00000125703 ATG4C 43067 sc-eQTL 8.05e-01 0.0211 0.0855 0.627 intMono L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.05e-01 0.0786 0.0941 0.627 intMono L2
ENSG00000162607 USP1 390902 sc-eQTL 4.95e-01 -0.0654 0.0957 0.627 intMono L2
ENSG00000240563 L1TD1 632350 sc-eQTL 5.56e-01 -0.0415 0.0704 0.627 intMono L2
ENSG00000079739 PGM1 -766212 sc-eQTL 3.06e-01 -0.0904 0.088 0.631 ncMono L2
ENSG00000088035 ALG6 -540376 sc-eQTL 2.81e-01 0.105 0.0967 0.631 ncMono L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.01e-01 0.0241 0.0954 0.631 ncMono L2
ENSG00000125703 ATG4C 43067 sc-eQTL 3.26e-01 0.0876 0.0889 0.631 ncMono L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 8.08e-01 0.0227 0.0932 0.631 ncMono L2
ENSG00000162607 USP1 390902 sc-eQTL 8.30e-01 -0.0204 0.0953 0.631 ncMono L2
ENSG00000240563 L1TD1 632350 sc-eQTL 1.97e-01 -0.087 0.0673 0.631 ncMono L2
ENSG00000079739 PGM1 -766212 sc-eQTL 8.67e-01 -0.0179 0.107 0.624 pDC L2
ENSG00000088035 ALG6 -540376 sc-eQTL 5.40e-02 0.199 0.103 0.624 pDC L2
ENSG00000116641 DOCK7 138813 sc-eQTL 8.99e-01 -0.0135 0.106 0.624 pDC L2
ENSG00000125703 ATG4C 43067 sc-eQTL 4.80e-01 0.0672 0.095 0.624 pDC L2
ENSG00000142856 ITGB3BP -766522 sc-eQTL 9.09e-02 -0.18 0.106 0.624 pDC L2
ENSG00000162607 USP1 390902 sc-eQTL 4.44e-01 0.0834 0.109 0.624 pDC L2
ENSG00000203965 EFCAB7 -696173 sc-eQTL 6.57e-01 -0.042 0.0945 0.624 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -766212 sc-eQTL 8.48e-01 -0.0172 0.0893 0.624 B_Memory LOneK1K
ENSG00000088035 ALG6 -540376 sc-eQTL 5.09e-01 -0.0652 0.0987 0.624 B_Memory LOneK1K
ENSG00000116641 DOCK7 138813 sc-eQTL 3.93e-01 0.0732 0.0856 0.624 B_Memory LOneK1K
ENSG00000125703 ATG4C 43067 sc-eQTL 3.72e-01 -0.0619 0.0692 0.624 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.05e-01 -0.0758 0.0909 0.624 B_Memory LOneK1K
ENSG00000162607 USP1 390902 sc-eQTL 4.26e-01 0.0705 0.0883 0.624 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -696173 sc-eQTL 1.16e-01 -0.149 0.0944 0.624 B_Memory LOneK1K
ENSG00000079739 PGM1 -766212 sc-eQTL 1.45e-01 0.134 0.0914 0.624 B_Naive LOneK1K
ENSG00000088035 ALG6 -540376 sc-eQTL 1.51e-01 0.136 0.0942 0.624 B_Naive LOneK1K
ENSG00000116641 DOCK7 138813 sc-eQTL 5.17e-01 -0.0573 0.0883 0.624 B_Naive LOneK1K
ENSG00000125703 ATG4C 43067 sc-eQTL 1.74e-02 0.159 0.0665 0.624 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.60e-01 -0.0705 0.0952 0.624 B_Naive LOneK1K
ENSG00000162607 USP1 390902 sc-eQTL 3.62e-01 -0.0747 0.0817 0.624 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -696173 sc-eQTL 3.17e-01 -0.096 0.0956 0.624 B_Naive LOneK1K
ENSG00000079739 PGM1 -766212 sc-eQTL 7.65e-01 0.0261 0.0869 0.624 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -540376 sc-eQTL 2.27e-02 -0.191 0.0832 0.624 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 138813 sc-eQTL 7.98e-01 0.0218 0.0848 0.624 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 43067 sc-eQTL 4.37e-01 0.0456 0.0585 0.624 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -766522 sc-eQTL 3.55e-01 0.0803 0.0865 0.624 CD14_Mono LOneK1K
ENSG00000162607 USP1 390902 sc-eQTL 2.18e-01 -0.0913 0.0738 0.624 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 632350 sc-eQTL 6.18e-01 0.0401 0.0803 0.624 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -766212 sc-eQTL 8.59e-01 -0.0148 0.0835 0.625 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -540376 sc-eQTL 1.11e-01 0.151 0.0942 0.625 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 138813 sc-eQTL 7.79e-01 0.0263 0.0938 0.625 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 43067 sc-eQTL 4.80e-01 0.0565 0.0799 0.625 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -766522 sc-eQTL 4.51e-01 0.0701 0.0927 0.625 CD16_Mono LOneK1K
ENSG00000162607 USP1 390902 sc-eQTL 2.19e-01 -0.107 0.0869 0.625 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 632350 sc-eQTL 6.87e-02 -0.108 0.059 0.625 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -766212 sc-eQTL 1.76e-01 0.0972 0.0716 0.623 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -540376 sc-eQTL 8.38e-01 -0.0177 0.0864 0.623 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 138813 sc-eQTL 1.48e-02 0.187 0.0763 0.623 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 43067 sc-eQTL 9.32e-01 0.00664 0.0773 0.623 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -766522 sc-eQTL 6.72e-01 -0.0388 0.0915 0.623 NK_CD56dim LOneK1K
ENSG00000162607 USP1 390902 sc-eQTL 4.16e-01 -0.0676 0.083 0.623 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -696173 sc-eQTL 3.25e-01 0.0996 0.101 0.623 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 138831 eQTL 4.48e-07 0.115 0.0225 0.0 0.0 0.35
ENSG00000125703 ATG4C 43067 eQTL 3.63e-05 0.0713 0.0172 0.0024 0.00273 0.35
ENSG00000132855 ANGPTL3 229712 pQTL 0.0418 0.0613 0.0301 0.0 0.0 0.355
ENSG00000142856 ITGB3BP -766522 eQTL 0.00324 -0.0889 0.0301 0.0 0.0 0.35
ENSG00000162607 USP1 390902 eQTL 0.000538 0.0459 0.0132 0.0 0.0 0.35

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 138831 5.49e-06 7.69e-06 6.63e-07 3.36e-06 1.71e-06 1.53e-06 7.49e-06 1.09e-06 4.6e-06 2.84e-06 8.01e-06 2.79e-06 1.01e-05 2.39e-06 1e-06 3.91e-06 2.92e-06 3.94e-06 1.43e-06 1.51e-06 2.75e-06 6.14e-06 4.68e-06 1.57e-06 8.96e-06 2.06e-06 2.55e-06 1.73e-06 5.1e-06 5.55e-06 3.42e-06 3.85e-07 7.68e-07 1.65e-06 2e-06 1.17e-06 1.03e-06 4.36e-07 9.69e-07 5.32e-07 4.72e-07 8.15e-06 8.15e-07 1.86e-07 6.11e-07 1.13e-06 1.02e-06 5.06e-07 3.9e-07
ENSG00000125703 ATG4C 43067 1.36e-05 1.55e-05 2.41e-06 7.79e-06 2.36e-06 5.5e-06 1.64e-05 2.21e-06 1.27e-05 6.02e-06 1.75e-05 6.53e-06 2.36e-05 5.14e-06 4.18e-06 7.72e-06 7.38e-06 1e-05 3.29e-06 3.23e-06 6.44e-06 1.26e-05 1.24e-05 3.54e-06 2.26e-05 4.65e-06 6.94e-06 5.39e-06 1.39e-05 1.21e-05 9.27e-06 9.92e-07 1.21e-06 3.52e-06 5.32e-06 2.77e-06 1.79e-06 2.03e-06 2.22e-06 1.2e-06 1.02e-06 1.88e-05 2.27e-06 1.68e-07 7.57e-07 1.72e-06 1.79e-06 7.53e-07 4.95e-07
ENSG00000142856 ITGB3BP -766522 3.92e-07 2.5e-07 6.41e-08 2.53e-07 1.07e-07 1.19e-07 3.25e-07 7.56e-08 2.26e-07 1.37e-07 2.84e-07 1.86e-07 4.05e-07 8.55e-08 1.07e-07 1.14e-07 8.42e-08 2.56e-07 9.19e-08 7.26e-08 1.52e-07 2.24e-07 2.2e-07 4.25e-08 3.14e-07 1.82e-07 1.37e-07 1.69e-07 1.47e-07 2.02e-07 1.78e-07 5.22e-08 5.64e-08 9.98e-08 7.44e-08 5.05e-08 7.86e-08 5.71e-08 5.4e-08 8.06e-08 5.09e-08 2.65e-07 1.21e-08 2.05e-08 4.99e-08 8.24e-09 7.66e-08 0.0 4.68e-08
ENSG00000162607 USP1 390902 1.21e-06 1.07e-06 3.28e-07 1.14e-06 3.23e-07 5.4e-07 1.63e-06 3.69e-07 1.5e-06 4.82e-07 1.89e-06 7.32e-07 2.33e-06 2.87e-07 5.32e-07 9.13e-07 8.89e-07 6.96e-07 8.21e-07 6.49e-07 7.72e-07 1.7e-06 9.18e-07 6.4e-07 2.27e-06 4.39e-07 9.05e-07 8.37e-07 1.31e-06 1.25e-06 7.64e-07 1.9e-07 2.53e-07 6.38e-07 5.32e-07 4.42e-07 6.81e-07 2.31e-07 4.99e-07 2.51e-07 2.82e-07 1.6e-06 2.91e-07 5.7e-08 1.52e-07 1.27e-07 2.37e-07 7.69e-08 1.11e-07