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Genes within 1Mb (chr1:62808867:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -784544 sc-eQTL 5.72e-01 0.0452 0.0797 0.6 B L1
ENSG00000088035 ALG6 -558708 sc-eQTL 6.37e-01 -0.039 0.0826 0.6 B L1
ENSG00000116641 DOCK7 120481 sc-eQTL 7.75e-01 -0.0236 0.0826 0.6 B L1
ENSG00000125703 ATG4C 24735 sc-eQTL 3.78e-01 0.0507 0.0573 0.6 B L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 2.53e-01 -0.104 0.0911 0.6 B L1
ENSG00000162607 USP1 372570 sc-eQTL 7.88e-01 0.0214 0.0793 0.6 B L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.67e-01 -0.129 0.0932 0.6 B L1
ENSG00000079739 PGM1 -784544 sc-eQTL 6.94e-01 0.0269 0.0682 0.6 CD4T L1
ENSG00000088035 ALG6 -558708 sc-eQTL 6.23e-01 -0.037 0.0753 0.6 CD4T L1
ENSG00000116641 DOCK7 120481 sc-eQTL 5.39e-01 0.0469 0.0762 0.6 CD4T L1
ENSG00000125703 ATG4C 24735 sc-eQTL 5.55e-01 0.0364 0.0615 0.6 CD4T L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 5.09e-01 0.0577 0.0873 0.6 CD4T L1
ENSG00000162607 USP1 372570 sc-eQTL 7.43e-01 0.0196 0.0597 0.6 CD4T L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.04e-01 0.127 0.078 0.6 CD4T L1
ENSG00000079739 PGM1 -784544 sc-eQTL 9.80e-01 -0.00186 0.0756 0.6 CD8T L1
ENSG00000088035 ALG6 -558708 sc-eQTL 6.14e-01 -0.0421 0.0833 0.6 CD8T L1
ENSG00000116641 DOCK7 120481 sc-eQTL 9.26e-01 -0.0079 0.0845 0.6 CD8T L1
ENSG00000125703 ATG4C 24735 sc-eQTL 4.29e-02 0.162 0.0795 0.6 CD8T L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 6.40e-01 0.042 0.0897 0.6 CD8T L1
ENSG00000162607 USP1 372570 sc-eQTL 7.11e-01 -0.0259 0.0699 0.6 CD8T L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 6.01e-01 0.0469 0.0894 0.6 CD8T L1
ENSG00000079739 PGM1 -784544 sc-eQTL 4.52e-01 -0.0637 0.0845 0.599 DC L1
ENSG00000088035 ALG6 -558708 sc-eQTL 8.14e-01 0.0206 0.0873 0.599 DC L1
ENSG00000116641 DOCK7 120481 sc-eQTL 8.33e-01 0.0189 0.0895 0.599 DC L1
ENSG00000125703 ATG4C 24735 sc-eQTL 7.24e-01 -0.0248 0.07 0.599 DC L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.62e-01 -0.017 0.0979 0.599 DC L1
ENSG00000162607 USP1 372570 sc-eQTL 7.40e-01 0.0284 0.0854 0.599 DC L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 4.19e-01 -0.0688 0.0851 0.599 DC L1
ENSG00000079739 PGM1 -784544 sc-eQTL 3.01e-01 0.085 0.0819 0.6 Mono L1
ENSG00000088035 ALG6 -558708 sc-eQTL 7.78e-02 -0.151 0.0851 0.6 Mono L1
ENSG00000116641 DOCK7 120481 sc-eQTL 1.97e-01 0.107 0.0826 0.6 Mono L1
ENSG00000125703 ATG4C 24735 sc-eQTL 1.77e-01 0.0756 0.0558 0.6 Mono L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.76e-01 0.0784 0.0884 0.6 Mono L1
ENSG00000162607 USP1 372570 sc-eQTL 5.64e-01 -0.042 0.0727 0.6 Mono L1
ENSG00000240563 L1TD1 614018 sc-eQTL 3.44e-01 -0.0642 0.0677 0.6 Mono L1
ENSG00000079739 PGM1 -784544 sc-eQTL 5.30e-01 0.0448 0.0713 0.601 NK L1
ENSG00000088035 ALG6 -558708 sc-eQTL 9.81e-01 -0.00201 0.0837 0.601 NK L1
ENSG00000116641 DOCK7 120481 sc-eQTL 7.65e-02 0.122 0.0684 0.601 NK L1
ENSG00000125703 ATG4C 24735 sc-eQTL 8.89e-01 -0.0103 0.074 0.601 NK L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 9.77e-01 0.00267 0.092 0.601 NK L1
ENSG00000162607 USP1 372570 sc-eQTL 6.52e-01 -0.0371 0.0822 0.601 NK L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 8.76e-01 -0.0156 0.0999 0.601 NK L1
ENSG00000079739 PGM1 -784544 sc-eQTL 3.41e-01 -0.0756 0.0792 0.6 Other_T L1
ENSG00000088035 ALG6 -558708 sc-eQTL 2.45e-01 0.0927 0.0795 0.6 Other_T L1
ENSG00000116641 DOCK7 120481 sc-eQTL 5.90e-01 0.0439 0.0814 0.6 Other_T L1
ENSG00000125703 ATG4C 24735 sc-eQTL 5.18e-03 0.196 0.0692 0.6 Other_T L1
ENSG00000142856 ITGB3BP -784854 sc-eQTL 2.59e-01 -0.0705 0.0623 0.6 Other_T L1
ENSG00000162607 USP1 372570 sc-eQTL 8.56e-01 -0.00985 0.0542 0.6 Other_T L1
ENSG00000203965 EFCAB7 -714505 sc-eQTL 2.91e-01 0.102 0.0962 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -784544 sc-eQTL 7.91e-01 -0.0293 0.11 0.599 B_Activated L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.42e-01 -0.0646 0.106 0.599 B_Activated L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.79e-01 -0.00265 0.0985 0.599 B_Activated L2
ENSG00000125703 ATG4C 24735 sc-eQTL 6.11e-01 -0.0528 0.104 0.599 B_Activated L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 4.89e-02 -0.199 0.1 0.599 B_Activated L2
ENSG00000162607 USP1 372570 sc-eQTL 9.33e-01 0.00929 0.11 0.599 B_Activated L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 7.52e-01 0.0303 0.0958 0.599 B_Activated L2
ENSG00000079739 PGM1 -784544 sc-eQTL 5.65e-01 -0.0562 0.0975 0.601 B_Intermediate L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.72e-01 -0.0713 0.099 0.601 B_Intermediate L2
ENSG00000116641 DOCK7 120481 sc-eQTL 6.35e-01 0.045 0.0947 0.601 B_Intermediate L2
ENSG00000125703 ATG4C 24735 sc-eQTL 5.77e-01 -0.0448 0.0801 0.601 B_Intermediate L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.50e-01 -0.0181 0.0955 0.601 B_Intermediate L2
ENSG00000162607 USP1 372570 sc-eQTL 6.90e-01 0.0381 0.0953 0.601 B_Intermediate L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.47e-01 -0.137 0.0941 0.601 B_Intermediate L2
ENSG00000079739 PGM1 -784544 sc-eQTL 8.93e-01 -0.0128 0.0952 0.599 B_Memory L2
ENSG00000088035 ALG6 -558708 sc-eQTL 6.02e-01 -0.0506 0.0967 0.599 B_Memory L2
ENSG00000116641 DOCK7 120481 sc-eQTL 5.95e-01 0.0483 0.0907 0.599 B_Memory L2
ENSG00000125703 ATG4C 24735 sc-eQTL 9.78e-01 -0.00233 0.0863 0.599 B_Memory L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 9.59e-01 0.00503 0.0987 0.599 B_Memory L2
ENSG00000162607 USP1 372570 sc-eQTL 3.71e-01 0.0892 0.0994 0.599 B_Memory L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 6.85e-01 0.0398 0.098 0.599 B_Memory L2
ENSG00000079739 PGM1 -784544 sc-eQTL 8.45e-01 0.0188 0.0956 0.6 B_Naive1 L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.67e-01 0.0551 0.0959 0.6 B_Naive1 L2
ENSG00000116641 DOCK7 120481 sc-eQTL 1.93e-01 -0.12 0.0916 0.6 B_Naive1 L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.01e-02 0.145 0.0702 0.6 B_Naive1 L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.74e-01 -0.0836 0.0938 0.6 B_Naive1 L2
ENSG00000162607 USP1 372570 sc-eQTL 2.78e-01 -0.0896 0.0824 0.6 B_Naive1 L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.88e-01 -0.132 0.0999 0.6 B_Naive1 L2
ENSG00000079739 PGM1 -784544 sc-eQTL 3.44e-01 0.0898 0.0947 0.601 B_Naive2 L2
ENSG00000088035 ALG6 -558708 sc-eQTL 2.86e-01 -0.106 0.0987 0.601 B_Naive2 L2
ENSG00000116641 DOCK7 120481 sc-eQTL 7.46e-01 0.0309 0.0951 0.601 B_Naive2 L2
ENSG00000125703 ATG4C 24735 sc-eQTL 9.48e-01 -0.00602 0.0916 0.601 B_Naive2 L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.74e-01 -0.0157 0.0993 0.601 B_Naive2 L2
ENSG00000162607 USP1 372570 sc-eQTL 8.00e-01 0.024 0.0945 0.601 B_Naive2 L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 7.05e-01 -0.0374 0.0988 0.601 B_Naive2 L2
ENSG00000079739 PGM1 -784544 sc-eQTL 4.60e-02 -0.189 0.0942 0.593 CD4_CTL L2
ENSG00000088035 ALG6 -558708 sc-eQTL 8.59e-01 0.0179 0.101 0.593 CD4_CTL L2
ENSG00000116641 DOCK7 120481 sc-eQTL 1.15e-01 0.138 0.0874 0.593 CD4_CTL L2
ENSG00000125703 ATG4C 24735 sc-eQTL 7.53e-01 0.0287 0.091 0.593 CD4_CTL L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 2.91e-02 0.211 0.0962 0.593 CD4_CTL L2
ENSG00000162607 USP1 372570 sc-eQTL 9.18e-01 0.00958 0.0926 0.593 CD4_CTL L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 3.92e-01 -0.0793 0.0923 0.593 CD4_CTL L2
ENSG00000079739 PGM1 -784544 sc-eQTL 3.84e-01 0.0666 0.0764 0.6 CD4_Naive L2
ENSG00000088035 ALG6 -558708 sc-eQTL 7.55e-01 0.0259 0.0831 0.6 CD4_Naive L2
ENSG00000116641 DOCK7 120481 sc-eQTL 8.11e-01 -0.0195 0.0817 0.6 CD4_Naive L2
ENSG00000125703 ATG4C 24735 sc-eQTL 9.04e-01 0.00873 0.0722 0.6 CD4_Naive L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.36e-01 -0.0183 0.0882 0.6 CD4_Naive L2
ENSG00000162607 USP1 372570 sc-eQTL 4.41e-01 0.052 0.0673 0.6 CD4_Naive L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.54e-02 0.211 0.0864 0.6 CD4_Naive L2
ENSG00000079739 PGM1 -784544 sc-eQTL 8.04e-01 0.0198 0.0799 0.6 CD4_TCM L2
ENSG00000088035 ALG6 -558708 sc-eQTL 8.63e-02 -0.159 0.0922 0.6 CD4_TCM L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.25e-01 -0.00772 0.0822 0.6 CD4_TCM L2
ENSG00000125703 ATG4C 24735 sc-eQTL 5.70e-01 0.0455 0.08 0.6 CD4_TCM L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.92e-01 0.0808 0.0942 0.6 CD4_TCM L2
ENSG00000162607 USP1 372570 sc-eQTL 8.69e-01 -0.0128 0.0774 0.6 CD4_TCM L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 4.30e-01 0.0722 0.0912 0.6 CD4_TCM L2
ENSG00000079739 PGM1 -784544 sc-eQTL 7.08e-01 0.0352 0.094 0.6 CD4_TEM L2
ENSG00000088035 ALG6 -558708 sc-eQTL 2.76e-01 -0.103 0.0943 0.6 CD4_TEM L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.59e-01 0.00478 0.0922 0.6 CD4_TEM L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.61e-01 0.066 0.0894 0.6 CD4_TEM L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 6.90e-01 0.0368 0.0924 0.6 CD4_TEM L2
ENSG00000162607 USP1 372570 sc-eQTL 6.79e-01 0.0363 0.0875 0.6 CD4_TEM L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 2.27e-01 -0.116 0.0954 0.6 CD4_TEM L2
ENSG00000079739 PGM1 -784544 sc-eQTL 1.56e-01 0.122 0.0856 0.6 CD8_CTL L2
ENSG00000088035 ALG6 -558708 sc-eQTL 3.80e-01 -0.0803 0.0913 0.6 CD8_CTL L2
ENSG00000116641 DOCK7 120481 sc-eQTL 2.39e-01 0.102 0.0865 0.6 CD8_CTL L2
ENSG00000125703 ATG4C 24735 sc-eQTL 2.85e-02 0.201 0.0913 0.6 CD8_CTL L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 9.27e-01 -0.00886 0.096 0.6 CD8_CTL L2
ENSG00000162607 USP1 372570 sc-eQTL 7.87e-01 0.0233 0.086 0.6 CD8_CTL L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 3.28e-01 0.0963 0.0982 0.6 CD8_CTL L2
ENSG00000079739 PGM1 -784544 sc-eQTL 8.81e-01 0.0131 0.0876 0.6 CD8_Naive L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.63e-01 -0.0666 0.0906 0.6 CD8_Naive L2
ENSG00000116641 DOCK7 120481 sc-eQTL 3.19e-02 -0.2 0.0927 0.6 CD8_Naive L2
ENSG00000125703 ATG4C 24735 sc-eQTL 2.15e-01 0.111 0.0897 0.6 CD8_Naive L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 6.15e-01 0.0459 0.0911 0.6 CD8_Naive L2
ENSG00000162607 USP1 372570 sc-eQTL 9.12e-01 0.00852 0.077 0.6 CD8_Naive L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 5.59e-01 0.0502 0.0858 0.6 CD8_Naive L2
ENSG00000079739 PGM1 -784544 sc-eQTL 3.07e-03 -0.287 0.0956 0.597 CD8_TCM L2
ENSG00000088035 ALG6 -558708 sc-eQTL 1.54e-01 0.141 0.0985 0.597 CD8_TCM L2
ENSG00000116641 DOCK7 120481 sc-eQTL 7.85e-01 0.0264 0.0966 0.597 CD8_TCM L2
ENSG00000125703 ATG4C 24735 sc-eQTL 7.77e-01 -0.028 0.0988 0.597 CD8_TCM L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.17e-01 0.0961 0.0957 0.597 CD8_TCM L2
ENSG00000162607 USP1 372570 sc-eQTL 9.25e-01 0.00867 0.0924 0.597 CD8_TCM L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.01e-02 0.25 0.0962 0.597 CD8_TCM L2
ENSG00000079739 PGM1 -784544 sc-eQTL 5.18e-01 0.0651 0.1 0.605 CD8_TEM L2
ENSG00000088035 ALG6 -558708 sc-eQTL 6.34e-02 0.187 0.1 0.605 CD8_TEM L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.73e-01 0.00327 0.0979 0.605 CD8_TEM L2
ENSG00000125703 ATG4C 24735 sc-eQTL 6.72e-02 0.172 0.0933 0.605 CD8_TEM L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 5.20e-01 0.0655 0.102 0.605 CD8_TEM L2
ENSG00000162607 USP1 372570 sc-eQTL 3.25e-01 -0.0956 0.0969 0.605 CD8_TEM L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 9.74e-01 0.00316 0.0988 0.605 CD8_TEM L2
ENSG00000079739 PGM1 -784544 sc-eQTL 1.13e-01 -0.145 0.091 0.597 MAIT L2
ENSG00000088035 ALG6 -558708 sc-eQTL 8.82e-01 0.0135 0.0907 0.597 MAIT L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.44e-01 0.00607 0.0869 0.597 MAIT L2
ENSG00000125703 ATG4C 24735 sc-eQTL 3.07e-02 0.197 0.0906 0.597 MAIT L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.31e-01 -0.0196 0.0918 0.597 MAIT L2
ENSG00000162607 USP1 372570 sc-eQTL 3.83e-01 0.0794 0.0909 0.597 MAIT L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 2.62e-01 0.106 0.0942 0.597 MAIT L2
ENSG00000079739 PGM1 -784544 sc-eQTL 7.69e-01 -0.0275 0.0934 0.598 NK_CD56bright L2
ENSG00000088035 ALG6 -558708 sc-eQTL 8.21e-01 -0.0218 0.0958 0.598 NK_CD56bright L2
ENSG00000116641 DOCK7 120481 sc-eQTL 1.24e-01 -0.128 0.0825 0.598 NK_CD56bright L2
ENSG00000125703 ATG4C 24735 sc-eQTL 2.41e-01 -0.109 0.0924 0.598 NK_CD56bright L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 7.21e-01 -0.0345 0.0965 0.598 NK_CD56bright L2
ENSG00000162607 USP1 372570 sc-eQTL 4.48e-01 0.0756 0.0994 0.598 NK_CD56bright L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.27e-01 -0.145 0.0947 0.598 NK_CD56bright L2
ENSG00000079739 PGM1 -784544 sc-eQTL 2.84e-01 -0.0795 0.074 0.599 NK_CD56dim L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.39e-01 -0.0578 0.094 0.599 NK_CD56dim L2
ENSG00000116641 DOCK7 120481 sc-eQTL 1.35e-01 0.122 0.0814 0.599 NK_CD56dim L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.47e-01 -0.0633 0.083 0.599 NK_CD56dim L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.31e-01 -0.0203 0.0946 0.599 NK_CD56dim L2
ENSG00000162607 USP1 372570 sc-eQTL 8.19e-01 -0.021 0.0918 0.599 NK_CD56dim L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 9.69e-01 0.00397 0.102 0.599 NK_CD56dim L2
ENSG00000079739 PGM1 -784544 sc-eQTL 2.68e-01 0.11 0.0989 0.605 NK_HLA L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.90e-01 -0.0711 0.103 0.605 NK_HLA L2
ENSG00000116641 DOCK7 120481 sc-eQTL 4.86e-01 0.0548 0.0786 0.605 NK_HLA L2
ENSG00000125703 ATG4C 24735 sc-eQTL 1.70e-01 0.125 0.091 0.605 NK_HLA L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.62e-01 0.0167 0.096 0.605 NK_HLA L2
ENSG00000162607 USP1 372570 sc-eQTL 9.75e-01 0.00321 0.101 0.605 NK_HLA L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 3.78e-01 0.0806 0.0913 0.605 NK_HLA L2
ENSG00000079739 PGM1 -784544 sc-eQTL 2.33e-01 0.0956 0.0799 0.599 NK_cytokine L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.41e-02 0.174 0.0898 0.599 NK_cytokine L2
ENSG00000116641 DOCK7 120481 sc-eQTL 1.62e-01 0.117 0.0835 0.599 NK_cytokine L2
ENSG00000125703 ATG4C 24735 sc-eQTL 6.09e-01 0.0439 0.0858 0.599 NK_cytokine L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 8.40e-01 -0.018 0.0889 0.599 NK_cytokine L2
ENSG00000162607 USP1 372570 sc-eQTL 5.66e-01 -0.0537 0.0934 0.599 NK_cytokine L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 3.07e-01 0.0967 0.0945 0.599 NK_cytokine L2
ENSG00000079739 PGM1 -784544 sc-eQTL 8.47e-01 0.0207 0.107 0.604 PB L2
ENSG00000088035 ALG6 -558708 sc-eQTL 7.64e-01 -0.0337 0.112 0.604 PB L2
ENSG00000116641 DOCK7 120481 sc-eQTL 8.58e-01 -0.0215 0.12 0.604 PB L2
ENSG00000125703 ATG4C 24735 sc-eQTL 3.17e-01 0.105 0.104 0.604 PB L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 7.09e-01 -0.0389 0.104 0.604 PB L2
ENSG00000162607 USP1 372570 sc-eQTL 7.67e-01 0.0308 0.104 0.604 PB L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 6.06e-01 0.0592 0.114 0.604 PB L2
ENSG00000079739 PGM1 -784544 sc-eQTL 9.11e-01 0.00964 0.086 0.6 Pro_T L2
ENSG00000088035 ALG6 -558708 sc-eQTL 7.58e-01 0.0269 0.0875 0.6 Pro_T L2
ENSG00000116641 DOCK7 120481 sc-eQTL 2.81e-01 0.0947 0.0876 0.6 Pro_T L2
ENSG00000125703 ATG4C 24735 sc-eQTL 6.54e-01 0.0345 0.0769 0.6 Pro_T L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.12e-02 -0.165 0.0763 0.6 Pro_T L2
ENSG00000162607 USP1 372570 sc-eQTL 7.11e-01 0.0197 0.053 0.6 Pro_T L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 1.62e-01 0.125 0.0892 0.6 Pro_T L2
ENSG00000079739 PGM1 -784544 sc-eQTL 9.23e-01 -0.00885 0.091 0.6 Treg L2
ENSG00000088035 ALG6 -558708 sc-eQTL 9.83e-01 -0.00202 0.0973 0.6 Treg L2
ENSG00000116641 DOCK7 120481 sc-eQTL 5.08e-01 0.0592 0.0892 0.6 Treg L2
ENSG00000125703 ATG4C 24735 sc-eQTL 7.48e-01 0.0294 0.0913 0.6 Treg L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 1.97e-01 0.123 0.0951 0.6 Treg L2
ENSG00000162607 USP1 372570 sc-eQTL 6.55e-01 -0.0413 0.0923 0.6 Treg L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 9.84e-01 -0.00178 0.0914 0.6 Treg L2
ENSG00000079739 PGM1 -784544 sc-eQTL 4.92e-01 -0.0624 0.0906 0.595 cDC L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.56e-02 -0.175 0.0911 0.595 cDC L2
ENSG00000116641 DOCK7 120481 sc-eQTL 3.58e-01 0.083 0.0901 0.595 cDC L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.80e-01 -0.0554 0.0783 0.595 cDC L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 6.88e-01 0.04 0.0993 0.595 cDC L2
ENSG00000162607 USP1 372570 sc-eQTL 7.70e-01 0.0259 0.0884 0.595 cDC L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 9.56e-01 0.00445 0.0798 0.595 cDC L2
ENSG00000079739 PGM1 -784544 sc-eQTL 1.91e-01 0.111 0.0845 0.6 cMono_IL1B L2
ENSG00000088035 ALG6 -558708 sc-eQTL 8.08e-02 -0.148 0.0843 0.6 cMono_IL1B L2
ENSG00000116641 DOCK7 120481 sc-eQTL 4.56e-01 0.0668 0.0894 0.6 cMono_IL1B L2
ENSG00000125703 ATG4C 24735 sc-eQTL 3.87e-01 0.0544 0.0629 0.6 cMono_IL1B L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.98e-01 0.0755 0.0891 0.6 cMono_IL1B L2
ENSG00000162607 USP1 372570 sc-eQTL 8.65e-01 -0.0134 0.0787 0.6 cMono_IL1B L2
ENSG00000240563 L1TD1 614018 sc-eQTL 7.47e-01 -0.0255 0.079 0.6 cMono_IL1B L2
ENSG00000079739 PGM1 -784544 sc-eQTL 4.34e-01 0.0734 0.0937 0.6 cMono_S100A L2
ENSG00000088035 ALG6 -558708 sc-eQTL 1.57e-01 -0.134 0.0946 0.6 cMono_S100A L2
ENSG00000116641 DOCK7 120481 sc-eQTL 4.36e-01 0.0687 0.088 0.6 cMono_S100A L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.71e-01 0.055 0.0762 0.6 cMono_S100A L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 2.92e-01 0.0907 0.0859 0.6 cMono_S100A L2
ENSG00000162607 USP1 372570 sc-eQTL 5.61e-01 -0.0516 0.0885 0.6 cMono_S100A L2
ENSG00000240563 L1TD1 614018 sc-eQTL 5.96e-01 0.0391 0.0737 0.6 cMono_S100A L2
ENSG00000079739 PGM1 -784544 sc-eQTL 4.18e-01 -0.0869 0.107 0.597 gdT L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.71e-01 -0.0825 0.114 0.597 gdT L2
ENSG00000116641 DOCK7 120481 sc-eQTL 4.87e-01 0.078 0.112 0.597 gdT L2
ENSG00000125703 ATG4C 24735 sc-eQTL 4.06e-01 -0.0892 0.107 0.597 gdT L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.78e-01 -0.1 0.113 0.597 gdT L2
ENSG00000162607 USP1 372570 sc-eQTL 2.00e-01 -0.138 0.107 0.597 gdT L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 8.48e-01 -0.0214 0.112 0.597 gdT L2
ENSG00000079739 PGM1 -784544 sc-eQTL 5.66e-01 0.0536 0.0933 0.602 intMono L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.89e-01 0.0602 0.0868 0.602 intMono L2
ENSG00000116641 DOCK7 120481 sc-eQTL 2.90e-01 0.0939 0.0885 0.602 intMono L2
ENSG00000125703 ATG4C 24735 sc-eQTL 8.02e-01 -0.0213 0.0847 0.602 intMono L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 7.62e-01 0.0284 0.0934 0.602 intMono L2
ENSG00000162607 USP1 372570 sc-eQTL 4.77e-01 -0.0676 0.0948 0.602 intMono L2
ENSG00000240563 L1TD1 614018 sc-eQTL 3.16e-01 -0.0701 0.0697 0.602 intMono L2
ENSG00000079739 PGM1 -784544 sc-eQTL 9.69e-01 -0.00334 0.086 0.604 ncMono L2
ENSG00000088035 ALG6 -558708 sc-eQTL 4.03e-01 0.079 0.0943 0.604 ncMono L2
ENSG00000116641 DOCK7 120481 sc-eQTL 9.40e-01 -0.00697 0.093 0.604 ncMono L2
ENSG00000125703 ATG4C 24735 sc-eQTL 2.87e-01 0.0925 0.0866 0.604 ncMono L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 5.17e-01 0.0589 0.0908 0.604 ncMono L2
ENSG00000162607 USP1 372570 sc-eQTL 8.04e-01 -0.0231 0.0928 0.604 ncMono L2
ENSG00000240563 L1TD1 614018 sc-eQTL 3.19e-01 -0.0656 0.0657 0.604 ncMono L2
ENSG00000079739 PGM1 -784544 sc-eQTL 4.77e-01 -0.073 0.102 0.599 pDC L2
ENSG00000088035 ALG6 -558708 sc-eQTL 5.52e-02 0.191 0.0988 0.599 pDC L2
ENSG00000116641 DOCK7 120481 sc-eQTL 6.18e-01 -0.0509 0.102 0.599 pDC L2
ENSG00000125703 ATG4C 24735 sc-eQTL 5.16e-01 0.0595 0.0915 0.599 pDC L2
ENSG00000142856 ITGB3BP -784854 sc-eQTL 7.76e-02 -0.181 0.102 0.599 pDC L2
ENSG00000162607 USP1 372570 sc-eQTL 2.59e-01 0.118 0.104 0.599 pDC L2
ENSG00000203965 EFCAB7 -714505 sc-eQTL 7.32e-01 -0.0312 0.091 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -784544 sc-eQTL 6.32e-01 -0.0434 0.0904 0.6 B_Memory LOneK1K
ENSG00000088035 ALG6 -558708 sc-eQTL 2.25e-01 -0.121 0.0997 0.6 B_Memory LOneK1K
ENSG00000116641 DOCK7 120481 sc-eQTL 2.44e-01 0.101 0.0866 0.6 B_Memory LOneK1K
ENSG00000125703 ATG4C 24735 sc-eQTL 6.01e-01 -0.0368 0.0702 0.6 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -784854 sc-eQTL 3.76e-01 -0.0817 0.0921 0.6 B_Memory LOneK1K
ENSG00000162607 USP1 372570 sc-eQTL 2.41e-01 0.105 0.0893 0.6 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -714505 sc-eQTL 4.62e-01 -0.0707 0.096 0.6 B_Memory LOneK1K
ENSG00000079739 PGM1 -784544 sc-eQTL 5.55e-01 0.0548 0.0927 0.6 B_Naive LOneK1K
ENSG00000088035 ALG6 -558708 sc-eQTL 8.72e-01 0.0154 0.0956 0.6 B_Naive LOneK1K
ENSG00000116641 DOCK7 120481 sc-eQTL 5.13e-01 -0.0584 0.0891 0.6 B_Naive LOneK1K
ENSG00000125703 ATG4C 24735 sc-eQTL 3.75e-02 0.141 0.0674 0.6 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -784854 sc-eQTL 4.34e-01 -0.0754 0.0961 0.6 B_Naive LOneK1K
ENSG00000162607 USP1 372570 sc-eQTL 5.41e-01 -0.0506 0.0826 0.6 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -714505 sc-eQTL 2.51e-01 -0.111 0.0965 0.6 B_Naive LOneK1K
ENSG00000079739 PGM1 -784544 sc-eQTL 2.84e-01 0.0925 0.0862 0.6 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -558708 sc-eQTL 3.91e-02 -0.172 0.0829 0.6 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 120481 sc-eQTL 3.46e-01 0.0795 0.0841 0.6 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 24735 sc-eQTL 1.82e-01 0.0777 0.058 0.6 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -784854 sc-eQTL 2.24e-01 0.105 0.0859 0.6 CD14_Mono LOneK1K
ENSG00000162607 USP1 372570 sc-eQTL 4.93e-01 -0.0506 0.0736 0.6 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 614018 sc-eQTL 8.88e-01 0.0113 0.0798 0.6 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -784544 sc-eQTL 4.55e-01 0.0617 0.0824 0.601 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -558708 sc-eQTL 2.56e-01 0.106 0.0934 0.601 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 120481 sc-eQTL 5.28e-01 0.0585 0.0926 0.601 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 24735 sc-eQTL 7.62e-01 0.024 0.079 0.601 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -784854 sc-eQTL 4.56e-01 0.0685 0.0916 0.601 CD16_Mono LOneK1K
ENSG00000162607 USP1 372570 sc-eQTL 4.24e-01 -0.069 0.0861 0.601 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 614018 sc-eQTL 5.73e-02 -0.111 0.0583 0.601 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -784544 sc-eQTL 5.47e-01 0.0437 0.0724 0.599 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -558708 sc-eQTL 8.46e-01 0.0169 0.0871 0.599 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 120481 sc-eQTL 2.07e-02 0.18 0.077 0.599 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 24735 sc-eQTL 8.56e-01 -0.0141 0.0779 0.599 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -784854 sc-eQTL 9.51e-01 0.00567 0.0923 0.599 NK_CD56dim LOneK1K
ENSG00000162607 USP1 372570 sc-eQTL 3.50e-01 -0.0783 0.0836 0.599 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -714505 sc-eQTL 5.42e-01 0.0621 0.102 0.599 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 120499 eQTL 8.83e-12 0.15 0.0217 0.0 0.0 0.374
ENSG00000125703 ATG4C 24735 eQTL 1.47e-05 0.0729 0.0167 0.00579 0.00574 0.374
ENSG00000132855 ANGPTL3 211380 pQTL 0.00111 0.0967 0.0296 0.0 0.0 0.381
ENSG00000142856 ITGB3BP -784854 eQTL 0.00316 -0.0868 0.0293 0.0 0.0 0.374
ENSG00000162607 USP1 372570 eQTL 0.000403 0.0457 0.0129 0.0 0.0 0.374

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 120499 5.85e-06 9.3e-06 6.54e-07 4.01e-06 1.71e-06 2.66e-06 8.7e-06 1.18e-06 5.25e-06 3.72e-06 8.9e-06 4.03e-06 1.04e-05 3.66e-06 1.4e-06 4.32e-06 3.72e-06 3.71e-06 1.93e-06 1.61e-06 3.19e-06 7.66e-06 5.31e-06 1.92e-06 1.18e-05 2.07e-06 3.53e-06 1.83e-06 6.27e-06 7.53e-06 3.88e-06 4.44e-07 5.68e-07 1.74e-06 2.82e-06 1.17e-06 1.03e-06 5.55e-07 8.84e-07 4.88e-07 6.17e-07 8.16e-06 8.46e-07 1.64e-07 4.38e-07 9.68e-07 8.95e-07 5.52e-07 3.29e-07
ENSG00000125703 ATG4C 24735 2.04e-05 2.3e-05 3.02e-06 1.14e-05 3.06e-06 8.76e-06 2.34e-05 3.34e-06 1.85e-05 9.45e-06 2.39e-05 1.02e-05 3.18e-05 8.95e-06 5.15e-06 1.03e-05 1.02e-05 1.51e-05 4.67e-06 4.12e-06 8.57e-06 1.97e-05 1.82e-05 4.98e-06 3.21e-05 5.37e-06 7.99e-06 7.73e-06 1.77e-05 1.58e-05 1.29e-05 1.19e-06 1.3e-06 4.07e-06 8.98e-06 3.74e-06 1.81e-06 2.61e-06 2.84e-06 1.84e-06 1.25e-06 2.6e-05 2.66e-06 2.73e-07 1.07e-06 2.61e-06 3.37e-06 9.54e-07 6.33e-07
ENSG00000142856 ITGB3BP -784854 3.02e-07 2.56e-07 6.86e-08 2.49e-07 1.01e-07 1.08e-07 2.5e-07 5.78e-08 1.86e-07 1.03e-07 1.86e-07 1.37e-07 2.29e-07 8.66e-08 6.6e-08 9.48e-08 8.74e-08 1.77e-07 1.13e-07 8.1e-08 1.34e-07 1.9e-07 1.86e-07 4.07e-08 2.99e-07 1.76e-07 1.29e-07 1.42e-07 1.39e-07 2e-07 1.22e-07 4.29e-08 4.86e-08 9.8e-08 5.16e-08 2.79e-08 9.52e-08 7.1e-08 5.78e-08 7.78e-08 4.92e-08 1.63e-07 3.59e-08 4.11e-08 3.07e-08 1.01e-08 7.8e-08 2.07e-09 4.91e-08
ENSG00000162607 USP1 372570 1.25e-06 1.48e-06 2.28e-07 1.2e-06 2.98e-07 5.87e-07 1.64e-06 3.54e-07 1.52e-06 4.78e-07 1.79e-06 7.04e-07 2.02e-06 2.98e-07 5.37e-07 9.16e-07 1.11e-06 6.1e-07 6.79e-07 5.05e-07 8.11e-07 1.69e-06 8.95e-07 6.37e-07 2.47e-06 6.01e-07 9.01e-07 7.99e-07 1.3e-06 1.23e-06 6.68e-07 2.52e-07 2.13e-07 5.21e-07 5.93e-07 3.94e-07 7.36e-07 2.44e-07 3.93e-07 2.46e-07 3.03e-07 1.56e-06 1.93e-07 1.81e-07 1.84e-07 1.3e-07 2.42e-07 8.37e-08 8.83e-08