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Genes within 1Mb (chr1:62795685:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -797726 sc-eQTL 5.72e-01 0.0452 0.0797 0.6 B L1
ENSG00000088035 ALG6 -571890 sc-eQTL 6.37e-01 -0.039 0.0826 0.6 B L1
ENSG00000116641 DOCK7 107299 sc-eQTL 7.75e-01 -0.0236 0.0826 0.6 B L1
ENSG00000125703 ATG4C 11553 sc-eQTL 3.78e-01 0.0507 0.0573 0.6 B L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 2.53e-01 -0.104 0.0911 0.6 B L1
ENSG00000162607 USP1 359388 sc-eQTL 7.88e-01 0.0214 0.0793 0.6 B L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.67e-01 -0.129 0.0932 0.6 B L1
ENSG00000079739 PGM1 -797726 sc-eQTL 6.94e-01 0.0269 0.0682 0.6 CD4T L1
ENSG00000088035 ALG6 -571890 sc-eQTL 6.23e-01 -0.037 0.0753 0.6 CD4T L1
ENSG00000116641 DOCK7 107299 sc-eQTL 5.39e-01 0.0469 0.0762 0.6 CD4T L1
ENSG00000125703 ATG4C 11553 sc-eQTL 5.55e-01 0.0364 0.0615 0.6 CD4T L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 5.09e-01 0.0577 0.0873 0.6 CD4T L1
ENSG00000162607 USP1 359388 sc-eQTL 7.43e-01 0.0196 0.0597 0.6 CD4T L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.04e-01 0.127 0.078 0.6 CD4T L1
ENSG00000079739 PGM1 -797726 sc-eQTL 9.80e-01 -0.00186 0.0756 0.6 CD8T L1
ENSG00000088035 ALG6 -571890 sc-eQTL 6.14e-01 -0.0421 0.0833 0.6 CD8T L1
ENSG00000116641 DOCK7 107299 sc-eQTL 9.26e-01 -0.0079 0.0845 0.6 CD8T L1
ENSG00000125703 ATG4C 11553 sc-eQTL 4.29e-02 0.162 0.0795 0.6 CD8T L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 6.40e-01 0.042 0.0897 0.6 CD8T L1
ENSG00000162607 USP1 359388 sc-eQTL 7.11e-01 -0.0259 0.0699 0.6 CD8T L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 6.01e-01 0.0469 0.0894 0.6 CD8T L1
ENSG00000079739 PGM1 -797726 sc-eQTL 4.52e-01 -0.0637 0.0845 0.599 DC L1
ENSG00000088035 ALG6 -571890 sc-eQTL 8.14e-01 0.0206 0.0873 0.599 DC L1
ENSG00000116641 DOCK7 107299 sc-eQTL 8.33e-01 0.0189 0.0895 0.599 DC L1
ENSG00000125703 ATG4C 11553 sc-eQTL 7.24e-01 -0.0248 0.07 0.599 DC L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.62e-01 -0.017 0.0979 0.599 DC L1
ENSG00000162607 USP1 359388 sc-eQTL 7.40e-01 0.0284 0.0854 0.599 DC L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 4.19e-01 -0.0688 0.0851 0.599 DC L1
ENSG00000079739 PGM1 -797726 sc-eQTL 3.01e-01 0.085 0.0819 0.6 Mono L1
ENSG00000088035 ALG6 -571890 sc-eQTL 7.78e-02 -0.151 0.0851 0.6 Mono L1
ENSG00000116641 DOCK7 107299 sc-eQTL 1.97e-01 0.107 0.0826 0.6 Mono L1
ENSG00000125703 ATG4C 11553 sc-eQTL 1.77e-01 0.0756 0.0558 0.6 Mono L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.76e-01 0.0784 0.0884 0.6 Mono L1
ENSG00000162607 USP1 359388 sc-eQTL 5.64e-01 -0.042 0.0727 0.6 Mono L1
ENSG00000240563 L1TD1 600836 sc-eQTL 3.44e-01 -0.0642 0.0677 0.6 Mono L1
ENSG00000079739 PGM1 -797726 sc-eQTL 5.30e-01 0.0448 0.0713 0.601 NK L1
ENSG00000088035 ALG6 -571890 sc-eQTL 9.81e-01 -0.00201 0.0837 0.601 NK L1
ENSG00000116641 DOCK7 107299 sc-eQTL 7.65e-02 0.122 0.0684 0.601 NK L1
ENSG00000125703 ATG4C 11553 sc-eQTL 8.89e-01 -0.0103 0.074 0.601 NK L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 9.77e-01 0.00267 0.092 0.601 NK L1
ENSG00000162607 USP1 359388 sc-eQTL 6.52e-01 -0.0371 0.0822 0.601 NK L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 8.76e-01 -0.0156 0.0999 0.601 NK L1
ENSG00000079739 PGM1 -797726 sc-eQTL 3.41e-01 -0.0756 0.0792 0.6 Other_T L1
ENSG00000088035 ALG6 -571890 sc-eQTL 2.45e-01 0.0927 0.0795 0.6 Other_T L1
ENSG00000116641 DOCK7 107299 sc-eQTL 5.90e-01 0.0439 0.0814 0.6 Other_T L1
ENSG00000125703 ATG4C 11553 sc-eQTL 5.18e-03 0.196 0.0692 0.6 Other_T L1
ENSG00000142856 ITGB3BP -798036 sc-eQTL 2.59e-01 -0.0705 0.0623 0.6 Other_T L1
ENSG00000162607 USP1 359388 sc-eQTL 8.56e-01 -0.00985 0.0542 0.6 Other_T L1
ENSG00000203965 EFCAB7 -727687 sc-eQTL 2.91e-01 0.102 0.0962 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -797726 sc-eQTL 7.91e-01 -0.0293 0.11 0.599 B_Activated L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.42e-01 -0.0646 0.106 0.599 B_Activated L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.79e-01 -0.00265 0.0985 0.599 B_Activated L2
ENSG00000125703 ATG4C 11553 sc-eQTL 6.11e-01 -0.0528 0.104 0.599 B_Activated L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 4.89e-02 -0.199 0.1 0.599 B_Activated L2
ENSG00000162607 USP1 359388 sc-eQTL 9.33e-01 0.00929 0.11 0.599 B_Activated L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 7.52e-01 0.0303 0.0958 0.599 B_Activated L2
ENSG00000079739 PGM1 -797726 sc-eQTL 5.65e-01 -0.0562 0.0975 0.601 B_Intermediate L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.72e-01 -0.0713 0.099 0.601 B_Intermediate L2
ENSG00000116641 DOCK7 107299 sc-eQTL 6.35e-01 0.045 0.0947 0.601 B_Intermediate L2
ENSG00000125703 ATG4C 11553 sc-eQTL 5.77e-01 -0.0448 0.0801 0.601 B_Intermediate L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.50e-01 -0.0181 0.0955 0.601 B_Intermediate L2
ENSG00000162607 USP1 359388 sc-eQTL 6.90e-01 0.0381 0.0953 0.601 B_Intermediate L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.47e-01 -0.137 0.0941 0.601 B_Intermediate L2
ENSG00000079739 PGM1 -797726 sc-eQTL 8.93e-01 -0.0128 0.0952 0.599 B_Memory L2
ENSG00000088035 ALG6 -571890 sc-eQTL 6.02e-01 -0.0506 0.0967 0.599 B_Memory L2
ENSG00000116641 DOCK7 107299 sc-eQTL 5.95e-01 0.0483 0.0907 0.599 B_Memory L2
ENSG00000125703 ATG4C 11553 sc-eQTL 9.78e-01 -0.00233 0.0863 0.599 B_Memory L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 9.59e-01 0.00503 0.0987 0.599 B_Memory L2
ENSG00000162607 USP1 359388 sc-eQTL 3.71e-01 0.0892 0.0994 0.599 B_Memory L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 6.85e-01 0.0398 0.098 0.599 B_Memory L2
ENSG00000079739 PGM1 -797726 sc-eQTL 8.45e-01 0.0188 0.0956 0.6 B_Naive1 L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.67e-01 0.0551 0.0959 0.6 B_Naive1 L2
ENSG00000116641 DOCK7 107299 sc-eQTL 1.93e-01 -0.12 0.0916 0.6 B_Naive1 L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.01e-02 0.145 0.0702 0.6 B_Naive1 L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.74e-01 -0.0836 0.0938 0.6 B_Naive1 L2
ENSG00000162607 USP1 359388 sc-eQTL 2.78e-01 -0.0896 0.0824 0.6 B_Naive1 L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.88e-01 -0.132 0.0999 0.6 B_Naive1 L2
ENSG00000079739 PGM1 -797726 sc-eQTL 3.44e-01 0.0898 0.0947 0.601 B_Naive2 L2
ENSG00000088035 ALG6 -571890 sc-eQTL 2.86e-01 -0.106 0.0987 0.601 B_Naive2 L2
ENSG00000116641 DOCK7 107299 sc-eQTL 7.46e-01 0.0309 0.0951 0.601 B_Naive2 L2
ENSG00000125703 ATG4C 11553 sc-eQTL 9.48e-01 -0.00602 0.0916 0.601 B_Naive2 L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.74e-01 -0.0157 0.0993 0.601 B_Naive2 L2
ENSG00000162607 USP1 359388 sc-eQTL 8.00e-01 0.024 0.0945 0.601 B_Naive2 L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 7.05e-01 -0.0374 0.0988 0.601 B_Naive2 L2
ENSG00000079739 PGM1 -797726 sc-eQTL 4.60e-02 -0.189 0.0942 0.593 CD4_CTL L2
ENSG00000088035 ALG6 -571890 sc-eQTL 8.59e-01 0.0179 0.101 0.593 CD4_CTL L2
ENSG00000116641 DOCK7 107299 sc-eQTL 1.15e-01 0.138 0.0874 0.593 CD4_CTL L2
ENSG00000125703 ATG4C 11553 sc-eQTL 7.53e-01 0.0287 0.091 0.593 CD4_CTL L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 2.91e-02 0.211 0.0962 0.593 CD4_CTL L2
ENSG00000162607 USP1 359388 sc-eQTL 9.18e-01 0.00958 0.0926 0.593 CD4_CTL L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 3.92e-01 -0.0793 0.0923 0.593 CD4_CTL L2
ENSG00000079739 PGM1 -797726 sc-eQTL 3.84e-01 0.0666 0.0764 0.6 CD4_Naive L2
ENSG00000088035 ALG6 -571890 sc-eQTL 7.55e-01 0.0259 0.0831 0.6 CD4_Naive L2
ENSG00000116641 DOCK7 107299 sc-eQTL 8.11e-01 -0.0195 0.0817 0.6 CD4_Naive L2
ENSG00000125703 ATG4C 11553 sc-eQTL 9.04e-01 0.00873 0.0722 0.6 CD4_Naive L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.36e-01 -0.0183 0.0882 0.6 CD4_Naive L2
ENSG00000162607 USP1 359388 sc-eQTL 4.41e-01 0.052 0.0673 0.6 CD4_Naive L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.54e-02 0.211 0.0864 0.6 CD4_Naive L2
ENSG00000079739 PGM1 -797726 sc-eQTL 8.04e-01 0.0198 0.0799 0.6 CD4_TCM L2
ENSG00000088035 ALG6 -571890 sc-eQTL 8.63e-02 -0.159 0.0922 0.6 CD4_TCM L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.25e-01 -0.00772 0.0822 0.6 CD4_TCM L2
ENSG00000125703 ATG4C 11553 sc-eQTL 5.70e-01 0.0455 0.08 0.6 CD4_TCM L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.92e-01 0.0808 0.0942 0.6 CD4_TCM L2
ENSG00000162607 USP1 359388 sc-eQTL 8.69e-01 -0.0128 0.0774 0.6 CD4_TCM L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 4.30e-01 0.0722 0.0912 0.6 CD4_TCM L2
ENSG00000079739 PGM1 -797726 sc-eQTL 7.08e-01 0.0352 0.094 0.6 CD4_TEM L2
ENSG00000088035 ALG6 -571890 sc-eQTL 2.76e-01 -0.103 0.0943 0.6 CD4_TEM L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.59e-01 0.00478 0.0922 0.6 CD4_TEM L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.61e-01 0.066 0.0894 0.6 CD4_TEM L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 6.90e-01 0.0368 0.0924 0.6 CD4_TEM L2
ENSG00000162607 USP1 359388 sc-eQTL 6.79e-01 0.0363 0.0875 0.6 CD4_TEM L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 2.27e-01 -0.116 0.0954 0.6 CD4_TEM L2
ENSG00000079739 PGM1 -797726 sc-eQTL 1.56e-01 0.122 0.0856 0.6 CD8_CTL L2
ENSG00000088035 ALG6 -571890 sc-eQTL 3.80e-01 -0.0803 0.0913 0.6 CD8_CTL L2
ENSG00000116641 DOCK7 107299 sc-eQTL 2.39e-01 0.102 0.0865 0.6 CD8_CTL L2
ENSG00000125703 ATG4C 11553 sc-eQTL 2.85e-02 0.201 0.0913 0.6 CD8_CTL L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 9.27e-01 -0.00886 0.096 0.6 CD8_CTL L2
ENSG00000162607 USP1 359388 sc-eQTL 7.87e-01 0.0233 0.086 0.6 CD8_CTL L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 3.28e-01 0.0963 0.0982 0.6 CD8_CTL L2
ENSG00000079739 PGM1 -797726 sc-eQTL 8.81e-01 0.0131 0.0876 0.6 CD8_Naive L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.63e-01 -0.0666 0.0906 0.6 CD8_Naive L2
ENSG00000116641 DOCK7 107299 sc-eQTL 3.19e-02 -0.2 0.0927 0.6 CD8_Naive L2
ENSG00000125703 ATG4C 11553 sc-eQTL 2.15e-01 0.111 0.0897 0.6 CD8_Naive L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 6.15e-01 0.0459 0.0911 0.6 CD8_Naive L2
ENSG00000162607 USP1 359388 sc-eQTL 9.12e-01 0.00852 0.077 0.6 CD8_Naive L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 5.59e-01 0.0502 0.0858 0.6 CD8_Naive L2
ENSG00000079739 PGM1 -797726 sc-eQTL 3.07e-03 -0.287 0.0956 0.597 CD8_TCM L2
ENSG00000088035 ALG6 -571890 sc-eQTL 1.54e-01 0.141 0.0985 0.597 CD8_TCM L2
ENSG00000116641 DOCK7 107299 sc-eQTL 7.85e-01 0.0264 0.0966 0.597 CD8_TCM L2
ENSG00000125703 ATG4C 11553 sc-eQTL 7.77e-01 -0.028 0.0988 0.597 CD8_TCM L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.17e-01 0.0961 0.0957 0.597 CD8_TCM L2
ENSG00000162607 USP1 359388 sc-eQTL 9.25e-01 0.00867 0.0924 0.597 CD8_TCM L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.01e-02 0.25 0.0962 0.597 CD8_TCM L2
ENSG00000079739 PGM1 -797726 sc-eQTL 5.18e-01 0.0651 0.1 0.605 CD8_TEM L2
ENSG00000088035 ALG6 -571890 sc-eQTL 6.34e-02 0.187 0.1 0.605 CD8_TEM L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.73e-01 0.00327 0.0979 0.605 CD8_TEM L2
ENSG00000125703 ATG4C 11553 sc-eQTL 6.72e-02 0.172 0.0933 0.605 CD8_TEM L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 5.20e-01 0.0655 0.102 0.605 CD8_TEM L2
ENSG00000162607 USP1 359388 sc-eQTL 3.25e-01 -0.0956 0.0969 0.605 CD8_TEM L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 9.74e-01 0.00316 0.0988 0.605 CD8_TEM L2
ENSG00000079739 PGM1 -797726 sc-eQTL 1.13e-01 -0.145 0.091 0.597 MAIT L2
ENSG00000088035 ALG6 -571890 sc-eQTL 8.82e-01 0.0135 0.0907 0.597 MAIT L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.44e-01 0.00607 0.0869 0.597 MAIT L2
ENSG00000125703 ATG4C 11553 sc-eQTL 3.07e-02 0.197 0.0906 0.597 MAIT L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.31e-01 -0.0196 0.0918 0.597 MAIT L2
ENSG00000162607 USP1 359388 sc-eQTL 3.83e-01 0.0794 0.0909 0.597 MAIT L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 2.62e-01 0.106 0.0942 0.597 MAIT L2
ENSG00000079739 PGM1 -797726 sc-eQTL 7.69e-01 -0.0275 0.0934 0.598 NK_CD56bright L2
ENSG00000088035 ALG6 -571890 sc-eQTL 8.21e-01 -0.0218 0.0958 0.598 NK_CD56bright L2
ENSG00000116641 DOCK7 107299 sc-eQTL 1.24e-01 -0.128 0.0825 0.598 NK_CD56bright L2
ENSG00000125703 ATG4C 11553 sc-eQTL 2.41e-01 -0.109 0.0924 0.598 NK_CD56bright L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 7.21e-01 -0.0345 0.0965 0.598 NK_CD56bright L2
ENSG00000162607 USP1 359388 sc-eQTL 4.48e-01 0.0756 0.0994 0.598 NK_CD56bright L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.27e-01 -0.145 0.0947 0.598 NK_CD56bright L2
ENSG00000079739 PGM1 -797726 sc-eQTL 2.84e-01 -0.0795 0.074 0.599 NK_CD56dim L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.39e-01 -0.0578 0.094 0.599 NK_CD56dim L2
ENSG00000116641 DOCK7 107299 sc-eQTL 1.35e-01 0.122 0.0814 0.599 NK_CD56dim L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.47e-01 -0.0633 0.083 0.599 NK_CD56dim L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.31e-01 -0.0203 0.0946 0.599 NK_CD56dim L2
ENSG00000162607 USP1 359388 sc-eQTL 8.19e-01 -0.021 0.0918 0.599 NK_CD56dim L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 9.69e-01 0.00397 0.102 0.599 NK_CD56dim L2
ENSG00000079739 PGM1 -797726 sc-eQTL 2.68e-01 0.11 0.0989 0.605 NK_HLA L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.90e-01 -0.0711 0.103 0.605 NK_HLA L2
ENSG00000116641 DOCK7 107299 sc-eQTL 4.86e-01 0.0548 0.0786 0.605 NK_HLA L2
ENSG00000125703 ATG4C 11553 sc-eQTL 1.70e-01 0.125 0.091 0.605 NK_HLA L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.62e-01 0.0167 0.096 0.605 NK_HLA L2
ENSG00000162607 USP1 359388 sc-eQTL 9.75e-01 0.00321 0.101 0.605 NK_HLA L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 3.78e-01 0.0806 0.0913 0.605 NK_HLA L2
ENSG00000079739 PGM1 -797726 sc-eQTL 2.33e-01 0.0956 0.0799 0.599 NK_cytokine L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.41e-02 0.174 0.0898 0.599 NK_cytokine L2
ENSG00000116641 DOCK7 107299 sc-eQTL 1.62e-01 0.117 0.0835 0.599 NK_cytokine L2
ENSG00000125703 ATG4C 11553 sc-eQTL 6.09e-01 0.0439 0.0858 0.599 NK_cytokine L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 8.40e-01 -0.018 0.0889 0.599 NK_cytokine L2
ENSG00000162607 USP1 359388 sc-eQTL 5.66e-01 -0.0537 0.0934 0.599 NK_cytokine L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 3.07e-01 0.0967 0.0945 0.599 NK_cytokine L2
ENSG00000079739 PGM1 -797726 sc-eQTL 8.47e-01 0.0207 0.107 0.604 PB L2
ENSG00000088035 ALG6 -571890 sc-eQTL 7.64e-01 -0.0337 0.112 0.604 PB L2
ENSG00000116641 DOCK7 107299 sc-eQTL 8.58e-01 -0.0215 0.12 0.604 PB L2
ENSG00000125703 ATG4C 11553 sc-eQTL 3.17e-01 0.105 0.104 0.604 PB L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 7.09e-01 -0.0389 0.104 0.604 PB L2
ENSG00000162607 USP1 359388 sc-eQTL 7.67e-01 0.0308 0.104 0.604 PB L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 6.06e-01 0.0592 0.114 0.604 PB L2
ENSG00000079739 PGM1 -797726 sc-eQTL 9.11e-01 0.00964 0.086 0.6 Pro_T L2
ENSG00000088035 ALG6 -571890 sc-eQTL 7.58e-01 0.0269 0.0875 0.6 Pro_T L2
ENSG00000116641 DOCK7 107299 sc-eQTL 2.81e-01 0.0947 0.0876 0.6 Pro_T L2
ENSG00000125703 ATG4C 11553 sc-eQTL 6.54e-01 0.0345 0.0769 0.6 Pro_T L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.12e-02 -0.165 0.0763 0.6 Pro_T L2
ENSG00000162607 USP1 359388 sc-eQTL 7.11e-01 0.0197 0.053 0.6 Pro_T L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 1.62e-01 0.125 0.0892 0.6 Pro_T L2
ENSG00000079739 PGM1 -797726 sc-eQTL 9.23e-01 -0.00885 0.091 0.6 Treg L2
ENSG00000088035 ALG6 -571890 sc-eQTL 9.83e-01 -0.00202 0.0973 0.6 Treg L2
ENSG00000116641 DOCK7 107299 sc-eQTL 5.08e-01 0.0592 0.0892 0.6 Treg L2
ENSG00000125703 ATG4C 11553 sc-eQTL 7.48e-01 0.0294 0.0913 0.6 Treg L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 1.97e-01 0.123 0.0951 0.6 Treg L2
ENSG00000162607 USP1 359388 sc-eQTL 6.55e-01 -0.0413 0.0923 0.6 Treg L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 9.84e-01 -0.00178 0.0914 0.6 Treg L2
ENSG00000079739 PGM1 -797726 sc-eQTL 4.92e-01 -0.0624 0.0906 0.595 cDC L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.56e-02 -0.175 0.0911 0.595 cDC L2
ENSG00000116641 DOCK7 107299 sc-eQTL 3.58e-01 0.083 0.0901 0.595 cDC L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.80e-01 -0.0554 0.0783 0.595 cDC L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 6.88e-01 0.04 0.0993 0.595 cDC L2
ENSG00000162607 USP1 359388 sc-eQTL 7.70e-01 0.0259 0.0884 0.595 cDC L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 9.56e-01 0.00445 0.0798 0.595 cDC L2
ENSG00000079739 PGM1 -797726 sc-eQTL 1.91e-01 0.111 0.0845 0.6 cMono_IL1B L2
ENSG00000088035 ALG6 -571890 sc-eQTL 8.08e-02 -0.148 0.0843 0.6 cMono_IL1B L2
ENSG00000116641 DOCK7 107299 sc-eQTL 4.56e-01 0.0668 0.0894 0.6 cMono_IL1B L2
ENSG00000125703 ATG4C 11553 sc-eQTL 3.87e-01 0.0544 0.0629 0.6 cMono_IL1B L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.98e-01 0.0755 0.0891 0.6 cMono_IL1B L2
ENSG00000162607 USP1 359388 sc-eQTL 8.65e-01 -0.0134 0.0787 0.6 cMono_IL1B L2
ENSG00000240563 L1TD1 600836 sc-eQTL 7.47e-01 -0.0255 0.079 0.6 cMono_IL1B L2
ENSG00000079739 PGM1 -797726 sc-eQTL 4.34e-01 0.0734 0.0937 0.6 cMono_S100A L2
ENSG00000088035 ALG6 -571890 sc-eQTL 1.57e-01 -0.134 0.0946 0.6 cMono_S100A L2
ENSG00000116641 DOCK7 107299 sc-eQTL 4.36e-01 0.0687 0.088 0.6 cMono_S100A L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.71e-01 0.055 0.0762 0.6 cMono_S100A L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 2.92e-01 0.0907 0.0859 0.6 cMono_S100A L2
ENSG00000162607 USP1 359388 sc-eQTL 5.61e-01 -0.0516 0.0885 0.6 cMono_S100A L2
ENSG00000240563 L1TD1 600836 sc-eQTL 5.96e-01 0.0391 0.0737 0.6 cMono_S100A L2
ENSG00000079739 PGM1 -797726 sc-eQTL 4.18e-01 -0.0869 0.107 0.597 gdT L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.71e-01 -0.0825 0.114 0.597 gdT L2
ENSG00000116641 DOCK7 107299 sc-eQTL 4.87e-01 0.078 0.112 0.597 gdT L2
ENSG00000125703 ATG4C 11553 sc-eQTL 4.06e-01 -0.0892 0.107 0.597 gdT L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.78e-01 -0.1 0.113 0.597 gdT L2
ENSG00000162607 USP1 359388 sc-eQTL 2.00e-01 -0.138 0.107 0.597 gdT L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 8.48e-01 -0.0214 0.112 0.597 gdT L2
ENSG00000079739 PGM1 -797726 sc-eQTL 5.66e-01 0.0536 0.0933 0.602 intMono L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.89e-01 0.0602 0.0868 0.602 intMono L2
ENSG00000116641 DOCK7 107299 sc-eQTL 2.90e-01 0.0939 0.0885 0.602 intMono L2
ENSG00000125703 ATG4C 11553 sc-eQTL 8.02e-01 -0.0213 0.0847 0.602 intMono L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 7.62e-01 0.0284 0.0934 0.602 intMono L2
ENSG00000162607 USP1 359388 sc-eQTL 4.77e-01 -0.0676 0.0948 0.602 intMono L2
ENSG00000240563 L1TD1 600836 sc-eQTL 3.16e-01 -0.0701 0.0697 0.602 intMono L2
ENSG00000079739 PGM1 -797726 sc-eQTL 9.69e-01 -0.00334 0.086 0.604 ncMono L2
ENSG00000088035 ALG6 -571890 sc-eQTL 4.03e-01 0.079 0.0943 0.604 ncMono L2
ENSG00000116641 DOCK7 107299 sc-eQTL 9.40e-01 -0.00697 0.093 0.604 ncMono L2
ENSG00000125703 ATG4C 11553 sc-eQTL 2.87e-01 0.0925 0.0866 0.604 ncMono L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 5.17e-01 0.0589 0.0908 0.604 ncMono L2
ENSG00000162607 USP1 359388 sc-eQTL 8.04e-01 -0.0231 0.0928 0.604 ncMono L2
ENSG00000240563 L1TD1 600836 sc-eQTL 3.19e-01 -0.0656 0.0657 0.604 ncMono L2
ENSG00000079739 PGM1 -797726 sc-eQTL 4.77e-01 -0.073 0.102 0.599 pDC L2
ENSG00000088035 ALG6 -571890 sc-eQTL 5.52e-02 0.191 0.0988 0.599 pDC L2
ENSG00000116641 DOCK7 107299 sc-eQTL 6.18e-01 -0.0509 0.102 0.599 pDC L2
ENSG00000125703 ATG4C 11553 sc-eQTL 5.16e-01 0.0595 0.0915 0.599 pDC L2
ENSG00000142856 ITGB3BP -798036 sc-eQTL 7.76e-02 -0.181 0.102 0.599 pDC L2
ENSG00000162607 USP1 359388 sc-eQTL 2.59e-01 0.118 0.104 0.599 pDC L2
ENSG00000203965 EFCAB7 -727687 sc-eQTL 7.32e-01 -0.0312 0.091 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -797726 sc-eQTL 6.32e-01 -0.0434 0.0904 0.6 B_Memory LOneK1K
ENSG00000088035 ALG6 -571890 sc-eQTL 2.25e-01 -0.121 0.0997 0.6 B_Memory LOneK1K
ENSG00000116641 DOCK7 107299 sc-eQTL 2.44e-01 0.101 0.0866 0.6 B_Memory LOneK1K
ENSG00000125703 ATG4C 11553 sc-eQTL 6.01e-01 -0.0368 0.0702 0.6 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -798036 sc-eQTL 3.76e-01 -0.0817 0.0921 0.6 B_Memory LOneK1K
ENSG00000162607 USP1 359388 sc-eQTL 2.41e-01 0.105 0.0893 0.6 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -727687 sc-eQTL 4.62e-01 -0.0707 0.096 0.6 B_Memory LOneK1K
ENSG00000079739 PGM1 -797726 sc-eQTL 5.55e-01 0.0548 0.0927 0.6 B_Naive LOneK1K
ENSG00000088035 ALG6 -571890 sc-eQTL 8.72e-01 0.0154 0.0956 0.6 B_Naive LOneK1K
ENSG00000116641 DOCK7 107299 sc-eQTL 5.13e-01 -0.0584 0.0891 0.6 B_Naive LOneK1K
ENSG00000125703 ATG4C 11553 sc-eQTL 3.75e-02 0.141 0.0674 0.6 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -798036 sc-eQTL 4.34e-01 -0.0754 0.0961 0.6 B_Naive LOneK1K
ENSG00000162607 USP1 359388 sc-eQTL 5.41e-01 -0.0506 0.0826 0.6 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -727687 sc-eQTL 2.51e-01 -0.111 0.0965 0.6 B_Naive LOneK1K
ENSG00000079739 PGM1 -797726 sc-eQTL 2.84e-01 0.0925 0.0862 0.6 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -571890 sc-eQTL 3.91e-02 -0.172 0.0829 0.6 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 107299 sc-eQTL 3.46e-01 0.0795 0.0841 0.6 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 11553 sc-eQTL 1.82e-01 0.0777 0.058 0.6 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -798036 sc-eQTL 2.24e-01 0.105 0.0859 0.6 CD14_Mono LOneK1K
ENSG00000162607 USP1 359388 sc-eQTL 4.93e-01 -0.0506 0.0736 0.6 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 600836 sc-eQTL 8.88e-01 0.0113 0.0798 0.6 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -797726 sc-eQTL 4.55e-01 0.0617 0.0824 0.601 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -571890 sc-eQTL 2.56e-01 0.106 0.0934 0.601 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 107299 sc-eQTL 5.28e-01 0.0585 0.0926 0.601 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 11553 sc-eQTL 7.62e-01 0.024 0.079 0.601 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -798036 sc-eQTL 4.56e-01 0.0685 0.0916 0.601 CD16_Mono LOneK1K
ENSG00000162607 USP1 359388 sc-eQTL 4.24e-01 -0.069 0.0861 0.601 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 600836 sc-eQTL 5.73e-02 -0.111 0.0583 0.601 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -797726 sc-eQTL 5.47e-01 0.0437 0.0724 0.599 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -571890 sc-eQTL 8.46e-01 0.0169 0.0871 0.599 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 107299 sc-eQTL 2.07e-02 0.18 0.077 0.599 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 11553 sc-eQTL 8.56e-01 -0.0141 0.0779 0.599 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -798036 sc-eQTL 9.51e-01 0.00567 0.0923 0.599 NK_CD56dim LOneK1K
ENSG00000162607 USP1 359388 sc-eQTL 3.50e-01 -0.0783 0.0836 0.599 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -727687 sc-eQTL 5.42e-01 0.0621 0.102 0.599 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 107317 eQTL 7.76e-12 0.151 0.0218 0.0 0.0 0.374
ENSG00000125703 ATG4C 11553 eQTL 1.5e-05 0.0731 0.0168 0.00567 0.00563 0.374
ENSG00000132855 ANGPTL3 198198 pQTL 0.000884 0.099 0.0297 0.0 0.0 0.381
ENSG00000142856 ITGB3BP -798036 eQTL 0.00316 -0.0872 0.0294 0.0 0.0 0.374
ENSG00000162607 USP1 359388 eQTL 0.000398 0.0459 0.0129 0.0 0.0 0.374

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 107317 6.2e-06 6.19e-06 8.35e-07 3.09e-06 1.64e-06 1.53e-06 6.54e-06 1.11e-06 5.05e-06 2.48e-06 6.76e-06 3.37e-06 8.47e-06 1.95e-06 1.23e-06 3.71e-06 2.51e-06 3.79e-06 1.47e-06 1.37e-06 3.09e-06 5.15e-06 4.51e-06 1.48e-06 7.58e-06 1.96e-06 2.28e-06 1.74e-06 4.46e-06 4.29e-06 2.83e-06 4.91e-07 7.38e-07 1.85e-06 2e-06 1.16e-06 9.16e-07 5.11e-07 1.06e-06 4.08e-07 2.08e-07 7.11e-06 6.72e-07 1.95e-07 4.06e-07 9.32e-07 8.71e-07 4.42e-07 2.87e-07
ENSG00000125703 ATG4C 11553 3.12e-05 3.04e-05 5.43e-06 1.48e-05 4.91e-06 1.29e-05 3.97e-05 3.96e-06 2.57e-05 1.33e-05 3.38e-05 1.48e-05 4.46e-05 1.28e-05 6.5e-06 1.57e-05 1.51e-05 2.19e-05 7.36e-06 6.02e-06 1.29e-05 2.86e-05 2.82e-05 7.92e-06 3.83e-05 6.66e-06 1.19e-05 1.12e-05 2.89e-05 2.32e-05 1.73e-05 1.6e-06 2.43e-06 6.44e-06 1.03e-05 5.04e-06 2.68e-06 3.11e-06 4.1e-06 3.08e-06 1.63e-06 3.51e-05 3.07e-06 2.62e-07 2.07e-06 3.41e-06 3.74e-06 1.44e-06 1.43e-06
ENSG00000142856 ITGB3BP -798036 2.67e-07 1.19e-07 3.54e-08 1.82e-07 9.01e-08 9.65e-08 1.42e-07 5.33e-08 1.41e-07 4.4e-08 1.62e-07 8.36e-08 1.41e-07 6.56e-08 5.84e-08 7.17e-08 3.94e-08 1.18e-07 5.36e-08 4.45e-08 1.05e-07 1.26e-07 1.26e-07 3.79e-08 1.33e-07 1.16e-07 1.11e-07 9.36e-08 1.05e-07 1.11e-07 9.73e-08 3.7e-08 3.16e-08 8.65e-08 8.94e-08 3.94e-08 5.03e-08 9.68e-08 7.63e-08 3.18e-08 4.69e-08 1.31e-07 5.22e-08 1.16e-08 5.19e-08 1.83e-08 1.23e-07 3.83e-09 4.73e-08
ENSG00000162607 USP1 359388 1.25e-06 6.81e-07 9.89e-08 3.95e-07 9.45e-08 2.67e-07 5.9e-07 1.37e-07 4.61e-07 2.26e-07 9e-07 4.31e-07 9.37e-07 1.58e-07 2.44e-07 2.36e-07 4.73e-07 4.2e-07 2.42e-07 1.97e-07 1.97e-07 4.14e-07 3.45e-07 1.76e-07 8.33e-07 2.6e-07 3.04e-07 3.24e-07 3.88e-07 5.82e-07 2.93e-07 5.69e-08 5.37e-08 1.36e-07 3.38e-07 1.66e-07 1.1e-07 7.75e-08 4.9e-08 5.25e-08 4.36e-08 6.15e-07 5.6e-08 1.54e-08 1.41e-07 1.46e-08 7.89e-08 2.25e-08 5.52e-08