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Genes within 1Mb (chr1:62764464:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -828947 sc-eQTL 4.90e-01 0.0554 0.0802 0.613 B L1
ENSG00000088035 ALG6 -603111 sc-eQTL 9.82e-01 -0.0019 0.0831 0.613 B L1
ENSG00000116641 DOCK7 76078 sc-eQTL 7.24e-01 -0.0293 0.0831 0.613 B L1
ENSG00000125703 ATG4C -19668 sc-eQTL 3.14e-01 0.0582 0.0576 0.613 B L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 1.43e-01 -0.135 0.0915 0.613 B L1
ENSG00000162607 USP1 328167 sc-eQTL 8.90e-01 -0.011 0.0798 0.613 B L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.09e-01 -0.151 0.0936 0.613 B L1
ENSG00000079739 PGM1 -828947 sc-eQTL 9.61e-01 0.00336 0.0688 0.613 CD4T L1
ENSG00000088035 ALG6 -603111 sc-eQTL 8.84e-01 -0.0111 0.0759 0.613 CD4T L1
ENSG00000116641 DOCK7 76078 sc-eQTL 5.40e-01 0.0471 0.0768 0.613 CD4T L1
ENSG00000125703 ATG4C -19668 sc-eQTL 7.60e-01 0.019 0.062 0.613 CD4T L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.55e-01 0.0394 0.088 0.613 CD4T L1
ENSG00000162607 USP1 328167 sc-eQTL 7.58e-01 0.0186 0.0602 0.613 CD4T L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 7.23e-02 0.142 0.0784 0.613 CD4T L1
ENSG00000079739 PGM1 -828947 sc-eQTL 8.73e-01 0.0123 0.0763 0.613 CD8T L1
ENSG00000088035 ALG6 -603111 sc-eQTL 5.88e-01 -0.0456 0.0841 0.613 CD8T L1
ENSG00000116641 DOCK7 76078 sc-eQTL 9.37e-01 -0.00674 0.0852 0.613 CD8T L1
ENSG00000125703 ATG4C -19668 sc-eQTL 1.43e-02 0.197 0.0798 0.613 CD8T L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 9.60e-01 0.00451 0.0905 0.613 CD8T L1
ENSG00000162607 USP1 328167 sc-eQTL 7.59e-01 -0.0216 0.0705 0.613 CD8T L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 5.73e-01 0.0509 0.0902 0.613 CD8T L1
ENSG00000079739 PGM1 -828947 sc-eQTL 5.30e-01 -0.0541 0.086 0.613 DC L1
ENSG00000088035 ALG6 -603111 sc-eQTL 9.28e-01 -0.00806 0.0889 0.613 DC L1
ENSG00000116641 DOCK7 76078 sc-eQTL 8.75e-01 0.0143 0.0911 0.613 DC L1
ENSG00000125703 ATG4C -19668 sc-eQTL 7.29e-01 -0.0248 0.0713 0.613 DC L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.85e-01 -0.0144 0.0996 0.613 DC L1
ENSG00000162607 USP1 328167 sc-eQTL 7.42e-01 0.0287 0.087 0.613 DC L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 4.21e-01 -0.0698 0.0866 0.613 DC L1
ENSG00000079739 PGM1 -828947 sc-eQTL 4.77e-01 0.0589 0.0827 0.613 Mono L1
ENSG00000088035 ALG6 -603111 sc-eQTL 7.10e-02 -0.156 0.0857 0.613 Mono L1
ENSG00000116641 DOCK7 76078 sc-eQTL 3.65e-01 0.0757 0.0834 0.613 Mono L1
ENSG00000125703 ATG4C -19668 sc-eQTL 2.36e-01 0.0669 0.0563 0.613 Mono L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 4.92e-01 0.0613 0.0892 0.613 Mono L1
ENSG00000162607 USP1 328167 sc-eQTL 5.54e-01 -0.0434 0.0732 0.613 Mono L1
ENSG00000240563 L1TD1 569615 sc-eQTL 2.77e-01 -0.0744 0.0682 0.613 Mono L1
ENSG00000079739 PGM1 -828947 sc-eQTL 4.09e-01 0.0593 0.0717 0.614 NK L1
ENSG00000088035 ALG6 -603111 sc-eQTL 7.87e-01 -0.0228 0.0842 0.614 NK L1
ENSG00000116641 DOCK7 76078 sc-eQTL 8.80e-02 0.118 0.0689 0.614 NK L1
ENSG00000125703 ATG4C -19668 sc-eQTL 8.57e-01 0.0134 0.0745 0.614 NK L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.57e-01 0.0167 0.0926 0.614 NK L1
ENSG00000162607 USP1 328167 sc-eQTL 9.39e-01 -0.0063 0.0827 0.614 NK L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 6.72e-01 -0.0426 0.1 0.614 NK L1
ENSG00000079739 PGM1 -828947 sc-eQTL 2.84e-01 -0.0863 0.0803 0.613 Other_T L1
ENSG00000088035 ALG6 -603111 sc-eQTL 2.88e-01 0.086 0.0807 0.613 Other_T L1
ENSG00000116641 DOCK7 76078 sc-eQTL 6.72e-01 0.035 0.0826 0.613 Other_T L1
ENSG00000125703 ATG4C -19668 sc-eQTL 7.03e-03 0.191 0.0703 0.613 Other_T L1
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.21e-01 -0.0775 0.0632 0.613 Other_T L1
ENSG00000162607 USP1 328167 sc-eQTL 8.53e-01 -0.0102 0.055 0.613 Other_T L1
ENSG00000203965 EFCAB7 -758908 sc-eQTL 2.47e-01 0.113 0.0976 0.613 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -828947 sc-eQTL 7.28e-01 -0.0387 0.111 0.612 B_Activated L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.09e-01 -0.0546 0.106 0.612 B_Activated L2
ENSG00000116641 DOCK7 76078 sc-eQTL 8.16e-01 -0.0231 0.0992 0.612 B_Activated L2
ENSG00000125703 ATG4C -19668 sc-eQTL 5.25e-01 -0.0664 0.104 0.612 B_Activated L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 4.01e-02 -0.208 0.101 0.612 B_Activated L2
ENSG00000162607 USP1 328167 sc-eQTL 8.87e-01 -0.0157 0.11 0.612 B_Activated L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 5.96e-01 0.0512 0.0964 0.612 B_Activated L2
ENSG00000079739 PGM1 -828947 sc-eQTL 4.62e-01 -0.0725 0.0984 0.614 B_Intermediate L2
ENSG00000088035 ALG6 -603111 sc-eQTL 7.91e-01 -0.0266 0.1 0.614 B_Intermediate L2
ENSG00000116641 DOCK7 76078 sc-eQTL 5.61e-01 0.0556 0.0955 0.614 B_Intermediate L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.78e-01 -0.0336 0.0809 0.614 B_Intermediate L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.80e-01 -0.0146 0.0964 0.614 B_Intermediate L2
ENSG00000162607 USP1 328167 sc-eQTL 7.64e-01 0.029 0.0962 0.614 B_Intermediate L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 2.22e-01 -0.117 0.0951 0.614 B_Intermediate L2
ENSG00000079739 PGM1 -828947 sc-eQTL 8.75e-01 -0.0152 0.0964 0.612 B_Memory L2
ENSG00000088035 ALG6 -603111 sc-eQTL 7.73e-01 -0.0283 0.098 0.612 B_Memory L2
ENSG00000116641 DOCK7 76078 sc-eQTL 5.90e-01 0.0495 0.0919 0.612 B_Memory L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.71e-01 -0.0372 0.0874 0.612 B_Memory L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.16e-01 -0.0232 0.1 0.612 B_Memory L2
ENSG00000162607 USP1 328167 sc-eQTL 4.10e-01 0.0831 0.101 0.612 B_Memory L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 9.58e-01 -0.00522 0.0993 0.612 B_Memory L2
ENSG00000079739 PGM1 -828947 sc-eQTL 5.77e-01 0.0538 0.0963 0.613 B_Naive1 L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.94e-01 0.0825 0.0966 0.613 B_Naive1 L2
ENSG00000116641 DOCK7 76078 sc-eQTL 2.27e-01 -0.112 0.0924 0.613 B_Naive1 L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.34e-02 0.144 0.0707 0.613 B_Naive1 L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.19e-01 -0.116 0.0944 0.613 B_Naive1 L2
ENSG00000162607 USP1 328167 sc-eQTL 2.37e-01 -0.0984 0.083 0.613 B_Naive1 L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.13e-01 -0.16 0.1 0.613 B_Naive1 L2
ENSG00000079739 PGM1 -828947 sc-eQTL 2.12e-01 0.119 0.0954 0.614 B_Naive2 L2
ENSG00000088035 ALG6 -603111 sc-eQTL 5.24e-01 -0.0636 0.0997 0.614 B_Naive2 L2
ENSG00000116641 DOCK7 76078 sc-eQTL 7.12e-01 0.0355 0.096 0.614 B_Naive2 L2
ENSG00000125703 ATG4C -19668 sc-eQTL 8.22e-01 0.0209 0.0924 0.614 B_Naive2 L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.92e-01 -0.0397 0.1 0.614 B_Naive2 L2
ENSG00000162607 USP1 328167 sc-eQTL 7.70e-01 -0.0279 0.0954 0.614 B_Naive2 L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 7.22e-01 -0.0356 0.0997 0.614 B_Naive2 L2
ENSG00000079739 PGM1 -828947 sc-eQTL 3.53e-02 -0.202 0.0954 0.607 CD4_CTL L2
ENSG00000088035 ALG6 -603111 sc-eQTL 9.38e-01 0.00795 0.102 0.607 CD4_CTL L2
ENSG00000116641 DOCK7 76078 sc-eQTL 1.59e-01 0.125 0.0887 0.607 CD4_CTL L2
ENSG00000125703 ATG4C -19668 sc-eQTL 7.55e-01 0.0288 0.0922 0.607 CD4_CTL L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.09e-02 0.184 0.0978 0.607 CD4_CTL L2
ENSG00000162607 USP1 328167 sc-eQTL 9.71e-01 0.00342 0.0939 0.607 CD4_CTL L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 2.19e-01 -0.115 0.0934 0.607 CD4_CTL L2
ENSG00000079739 PGM1 -828947 sc-eQTL 6.39e-01 0.0362 0.077 0.613 CD4_Naive L2
ENSG00000088035 ALG6 -603111 sc-eQTL 4.85e-01 0.0584 0.0836 0.613 CD4_Naive L2
ENSG00000116641 DOCK7 76078 sc-eQTL 7.70e-01 -0.024 0.0822 0.613 CD4_Naive L2
ENSG00000125703 ATG4C -19668 sc-eQTL 8.46e-01 -0.0142 0.0727 0.613 CD4_Naive L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.21e-01 -0.0439 0.0888 0.613 CD4_Naive L2
ENSG00000162607 USP1 328167 sc-eQTL 4.42e-01 0.0523 0.0678 0.613 CD4_Naive L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.07e-02 0.224 0.0869 0.613 CD4_Naive L2
ENSG00000079739 PGM1 -828947 sc-eQTL 7.07e-01 0.0304 0.0806 0.613 CD4_TCM L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.88e-02 -0.17 0.0929 0.613 CD4_TCM L2
ENSG00000116641 DOCK7 76078 sc-eQTL 9.95e-01 -0.000558 0.083 0.613 CD4_TCM L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.46e-01 0.0371 0.0807 0.613 CD4_TCM L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.86e-01 0.102 0.095 0.613 CD4_TCM L2
ENSG00000162607 USP1 328167 sc-eQTL 8.62e-01 -0.0136 0.0781 0.613 CD4_TCM L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 3.43e-01 0.0874 0.0919 0.613 CD4_TCM L2
ENSG00000079739 PGM1 -828947 sc-eQTL 7.75e-01 0.0271 0.0948 0.613 CD4_TEM L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.25e-01 -0.0938 0.0951 0.613 CD4_TEM L2
ENSG00000116641 DOCK7 76078 sc-eQTL 9.94e-01 -0.000735 0.0929 0.613 CD4_TEM L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.25e-01 0.072 0.0901 0.613 CD4_TEM L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 7.98e-01 0.0238 0.0931 0.613 CD4_TEM L2
ENSG00000162607 USP1 328167 sc-eQTL 5.87e-01 0.0479 0.0882 0.613 CD4_TEM L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 3.10e-01 -0.0979 0.0963 0.613 CD4_TEM L2
ENSG00000079739 PGM1 -828947 sc-eQTL 1.94e-01 0.113 0.0865 0.613 CD8_CTL L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.76e-01 -0.0818 0.0922 0.613 CD8_CTL L2
ENSG00000116641 DOCK7 76078 sc-eQTL 2.02e-01 0.112 0.0873 0.613 CD8_CTL L2
ENSG00000125703 ATG4C -19668 sc-eQTL 3.06e-02 0.201 0.0922 0.613 CD8_CTL L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.56e-01 -0.0432 0.0969 0.613 CD8_CTL L2
ENSG00000162607 USP1 328167 sc-eQTL 6.37e-01 0.0411 0.0868 0.613 CD8_CTL L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 2.48e-01 0.115 0.099 0.613 CD8_CTL L2
ENSG00000079739 PGM1 -828947 sc-eQTL 8.69e-01 0.0146 0.0884 0.613 CD8_Naive L2
ENSG00000088035 ALG6 -603111 sc-eQTL 2.99e-01 -0.0951 0.0913 0.613 CD8_Naive L2
ENSG00000116641 DOCK7 76078 sc-eQTL 3.21e-02 -0.202 0.0936 0.613 CD8_Naive L2
ENSG00000125703 ATG4C -19668 sc-eQTL 1.14e-01 0.143 0.0903 0.613 CD8_Naive L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.11e-01 0.022 0.092 0.613 CD8_Naive L2
ENSG00000162607 USP1 328167 sc-eQTL 8.89e-01 0.0109 0.0777 0.613 CD8_Naive L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 5.96e-01 0.0461 0.0866 0.613 CD8_Naive L2
ENSG00000079739 PGM1 -828947 sc-eQTL 1.05e-02 -0.252 0.0973 0.611 CD8_TCM L2
ENSG00000088035 ALG6 -603111 sc-eQTL 1.89e-01 0.132 0.0998 0.611 CD8_TCM L2
ENSG00000116641 DOCK7 76078 sc-eQTL 8.06e-01 0.0241 0.0978 0.611 CD8_TCM L2
ENSG00000125703 ATG4C -19668 sc-eQTL 8.39e-01 -0.0204 0.1 0.611 CD8_TCM L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 4.66e-01 0.071 0.0971 0.611 CD8_TCM L2
ENSG00000162607 USP1 328167 sc-eQTL 7.92e-01 0.0247 0.0936 0.611 CD8_TCM L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.28e-02 0.245 0.0975 0.611 CD8_TCM L2
ENSG00000079739 PGM1 -828947 sc-eQTL 5.28e-01 0.0645 0.102 0.619 CD8_TEM L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.34e-02 0.217 0.101 0.619 CD8_TEM L2
ENSG00000116641 DOCK7 76078 sc-eQTL 9.73e-01 0.00341 0.0993 0.619 CD8_TEM L2
ENSG00000125703 ATG4C -19668 sc-eQTL 3.45e-02 0.201 0.0944 0.619 CD8_TEM L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.83e-01 0.0423 0.103 0.619 CD8_TEM L2
ENSG00000162607 USP1 328167 sc-eQTL 3.20e-01 -0.0981 0.0983 0.619 CD8_TEM L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 8.35e-01 -0.0209 0.1 0.619 CD8_TEM L2
ENSG00000079739 PGM1 -828947 sc-eQTL 1.40e-01 -0.137 0.0924 0.61 MAIT L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.64e-01 0.0399 0.0919 0.61 MAIT L2
ENSG00000116641 DOCK7 76078 sc-eQTL 9.79e-01 -0.00229 0.0881 0.61 MAIT L2
ENSG00000125703 ATG4C -19668 sc-eQTL 3.47e-02 0.195 0.0919 0.61 MAIT L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 5.24e-01 -0.0594 0.093 0.61 MAIT L2
ENSG00000162607 USP1 328167 sc-eQTL 3.68e-01 0.0832 0.0922 0.61 MAIT L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 2.43e-01 0.112 0.0955 0.61 MAIT L2
ENSG00000079739 PGM1 -828947 sc-eQTL 7.02e-01 -0.0361 0.0943 0.611 NK_CD56bright L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.76e-01 -0.0405 0.0966 0.611 NK_CD56bright L2
ENSG00000116641 DOCK7 76078 sc-eQTL 2.13e-01 -0.104 0.0834 0.611 NK_CD56bright L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.04e-01 -0.0781 0.0934 0.611 NK_CD56bright L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 9.83e-01 0.00213 0.0974 0.611 NK_CD56bright L2
ENSG00000162607 USP1 328167 sc-eQTL 5.05e-01 0.067 0.1 0.611 NK_CD56bright L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.09e-01 -0.154 0.0955 0.611 NK_CD56bright L2
ENSG00000079739 PGM1 -828947 sc-eQTL 3.86e-01 -0.0647 0.0744 0.612 NK_CD56dim L2
ENSG00000088035 ALG6 -603111 sc-eQTL 4.47e-01 -0.072 0.0945 0.612 NK_CD56dim L2
ENSG00000116641 DOCK7 76078 sc-eQTL 1.45e-01 0.12 0.0819 0.612 NK_CD56dim L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.01e-01 -0.0437 0.0836 0.612 NK_CD56dim L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 7.36e-01 -0.0321 0.0951 0.612 NK_CD56dim L2
ENSG00000162607 USP1 328167 sc-eQTL 9.84e-01 0.00189 0.0923 0.612 NK_CD56dim L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 8.78e-01 0.0158 0.103 0.612 NK_CD56dim L2
ENSG00000079739 PGM1 -828947 sc-eQTL 2.88e-01 0.106 0.0997 0.616 NK_HLA L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.88e-01 -0.0895 0.103 0.616 NK_HLA L2
ENSG00000116641 DOCK7 76078 sc-eQTL 7.18e-01 0.0287 0.0792 0.616 NK_HLA L2
ENSG00000125703 ATG4C -19668 sc-eQTL 1.29e-01 0.14 0.0917 0.616 NK_HLA L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 9.60e-01 0.00484 0.0968 0.616 NK_HLA L2
ENSG00000162607 USP1 328167 sc-eQTL 7.83e-01 0.028 0.101 0.616 NK_HLA L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 4.46e-01 0.0702 0.092 0.616 NK_HLA L2
ENSG00000079739 PGM1 -828947 sc-eQTL 1.77e-01 0.109 0.0804 0.612 NK_cytokine L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.26e-02 0.169 0.0905 0.612 NK_cytokine L2
ENSG00000116641 DOCK7 76078 sc-eQTL 1.54e-01 0.12 0.0841 0.612 NK_cytokine L2
ENSG00000125703 ATG4C -19668 sc-eQTL 5.06e-01 0.0575 0.0864 0.612 NK_cytokine L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.73e-01 -0.0143 0.0895 0.612 NK_cytokine L2
ENSG00000162607 USP1 328167 sc-eQTL 9.59e-01 -0.00485 0.0941 0.612 NK_cytokine L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 5.42e-01 0.0583 0.0953 0.612 NK_cytokine L2
ENSG00000079739 PGM1 -828947 sc-eQTL 9.90e-01 0.00133 0.109 0.615 PB L2
ENSG00000088035 ALG6 -603111 sc-eQTL 8.54e-01 0.021 0.114 0.615 PB L2
ENSG00000116641 DOCK7 76078 sc-eQTL 9.95e-01 -0.000788 0.122 0.615 PB L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.03e-01 0.0891 0.106 0.615 PB L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 7.53e-01 -0.0336 0.106 0.615 PB L2
ENSG00000162607 USP1 328167 sc-eQTL 7.94e-01 0.0277 0.106 0.615 PB L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 8.92e-01 0.0159 0.117 0.615 PB L2
ENSG00000079739 PGM1 -828947 sc-eQTL 8.83e-01 0.0128 0.0868 0.613 Pro_T L2
ENSG00000088035 ALG6 -603111 sc-eQTL 9.97e-01 -0.00033 0.0883 0.613 Pro_T L2
ENSG00000116641 DOCK7 76078 sc-eQTL 3.13e-01 0.0894 0.0884 0.613 Pro_T L2
ENSG00000125703 ATG4C -19668 sc-eQTL 9.53e-01 0.00454 0.0776 0.613 Pro_T L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 5.09e-02 -0.151 0.0771 0.613 Pro_T L2
ENSG00000162607 USP1 328167 sc-eQTL 6.00e-01 0.0281 0.0535 0.613 Pro_T L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.40e-01 0.133 0.09 0.613 Pro_T L2
ENSG00000079739 PGM1 -828947 sc-eQTL 9.82e-01 0.00205 0.092 0.613 Treg L2
ENSG00000088035 ALG6 -603111 sc-eQTL 7.67e-01 0.0292 0.0984 0.613 Treg L2
ENSG00000116641 DOCK7 76078 sc-eQTL 4.80e-01 0.0638 0.0902 0.613 Treg L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.53e-01 0.0416 0.0923 0.613 Treg L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.58e-01 0.109 0.0963 0.613 Treg L2
ENSG00000162607 USP1 328167 sc-eQTL 6.11e-01 -0.0475 0.0934 0.613 Treg L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 6.55e-01 -0.0414 0.0924 0.613 Treg L2
ENSG00000079739 PGM1 -828947 sc-eQTL 3.57e-01 -0.0847 0.0917 0.607 cDC L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.94e-02 -0.169 0.0923 0.607 cDC L2
ENSG00000116641 DOCK7 76078 sc-eQTL 4.66e-01 0.0668 0.0913 0.607 cDC L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.41e-01 -0.0612 0.0793 0.607 cDC L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 4.53e-01 0.0755 0.1 0.607 cDC L2
ENSG00000162607 USP1 328167 sc-eQTL 7.53e-01 0.0283 0.0896 0.607 cDC L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 9.30e-01 0.00708 0.0809 0.607 cDC L2
ENSG00000079739 PGM1 -828947 sc-eQTL 2.23e-01 0.104 0.0855 0.613 cMono_IL1B L2
ENSG00000088035 ALG6 -603111 sc-eQTL 6.59e-02 -0.157 0.0852 0.613 cMono_IL1B L2
ENSG00000116641 DOCK7 76078 sc-eQTL 6.04e-01 0.047 0.0905 0.613 cMono_IL1B L2
ENSG00000125703 ATG4C -19668 sc-eQTL 3.54e-01 0.0591 0.0635 0.613 cMono_IL1B L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 4.35e-01 0.0704 0.09 0.613 cMono_IL1B L2
ENSG00000162607 USP1 328167 sc-eQTL 9.04e-01 -0.00956 0.0795 0.613 cMono_IL1B L2
ENSG00000240563 L1TD1 569615 sc-eQTL 6.56e-01 -0.0357 0.0799 0.613 cMono_IL1B L2
ENSG00000079739 PGM1 -828947 sc-eQTL 4.94e-01 0.0648 0.0946 0.613 cMono_S100A L2
ENSG00000088035 ALG6 -603111 sc-eQTL 1.67e-01 -0.133 0.0955 0.613 cMono_S100A L2
ENSG00000116641 DOCK7 76078 sc-eQTL 6.99e-01 0.0345 0.089 0.613 cMono_S100A L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.63e-01 0.0337 0.077 0.613 cMono_S100A L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 3.90e-01 0.0747 0.0868 0.613 cMono_S100A L2
ENSG00000162607 USP1 328167 sc-eQTL 5.44e-01 -0.0543 0.0894 0.613 cMono_S100A L2
ENSG00000240563 L1TD1 569615 sc-eQTL 3.66e-01 0.0673 0.0743 0.613 cMono_S100A L2
ENSG00000079739 PGM1 -828947 sc-eQTL 4.27e-01 -0.0856 0.107 0.612 gdT L2
ENSG00000088035 ALG6 -603111 sc-eQTL 3.25e-01 -0.113 0.114 0.612 gdT L2
ENSG00000116641 DOCK7 76078 sc-eQTL 3.47e-01 0.106 0.112 0.612 gdT L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.52e-01 -0.081 0.107 0.612 gdT L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 3.51e-01 -0.107 0.114 0.612 gdT L2
ENSG00000162607 USP1 328167 sc-eQTL 1.84e-01 -0.143 0.108 0.612 gdT L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 8.67e-01 0.0189 0.112 0.612 gdT L2
ENSG00000079739 PGM1 -828947 sc-eQTL 6.51e-01 0.0428 0.0943 0.616 intMono L2
ENSG00000088035 ALG6 -603111 sc-eQTL 5.07e-01 0.0583 0.0878 0.616 intMono L2
ENSG00000116641 DOCK7 76078 sc-eQTL 3.61e-01 0.0821 0.0896 0.616 intMono L2
ENSG00000125703 ATG4C -19668 sc-eQTL 6.93e-01 -0.0339 0.0857 0.616 intMono L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 6.57e-01 0.042 0.0944 0.616 intMono L2
ENSG00000162607 USP1 328167 sc-eQTL 5.95e-01 -0.0511 0.096 0.616 intMono L2
ENSG00000240563 L1TD1 569615 sc-eQTL 1.97e-01 -0.0911 0.0703 0.616 intMono L2
ENSG00000079739 PGM1 -828947 sc-eQTL 5.57e-01 -0.0513 0.0872 0.618 ncMono L2
ENSG00000088035 ALG6 -603111 sc-eQTL 4.00e-01 0.0808 0.0957 0.618 ncMono L2
ENSG00000116641 DOCK7 76078 sc-eQTL 7.45e-01 -0.0307 0.0944 0.618 ncMono L2
ENSG00000125703 ATG4C -19668 sc-eQTL 4.43e-01 0.0676 0.088 0.618 ncMono L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 8.16e-01 0.0215 0.0922 0.618 ncMono L2
ENSG00000162607 USP1 328167 sc-eQTL 8.41e-01 -0.019 0.0942 0.618 ncMono L2
ENSG00000240563 L1TD1 569615 sc-eQTL 3.93e-01 -0.0571 0.0667 0.618 ncMono L2
ENSG00000079739 PGM1 -828947 sc-eQTL 9.10e-01 -0.012 0.106 0.613 pDC L2
ENSG00000088035 ALG6 -603111 sc-eQTL 8.41e-02 0.177 0.102 0.613 pDC L2
ENSG00000116641 DOCK7 76078 sc-eQTL 7.32e-01 -0.0361 0.105 0.613 pDC L2
ENSG00000125703 ATG4C -19668 sc-eQTL 3.87e-01 0.0817 0.0941 0.613 pDC L2
ENSG00000142856 ITGB3BP -829257 sc-eQTL 5.39e-02 -0.203 0.105 0.613 pDC L2
ENSG00000162607 USP1 328167 sc-eQTL 3.31e-01 0.105 0.108 0.613 pDC L2
ENSG00000203965 EFCAB7 -758908 sc-eQTL 5.36e-01 -0.058 0.0936 0.613 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -828947 sc-eQTL 4.02e-01 -0.0763 0.0909 0.613 B_Memory LOneK1K
ENSG00000088035 ALG6 -603111 sc-eQTL 4.70e-01 -0.0728 0.101 0.613 B_Memory LOneK1K
ENSG00000116641 DOCK7 76078 sc-eQTL 2.12e-01 0.109 0.0871 0.613 B_Memory LOneK1K
ENSG00000125703 ATG4C -19668 sc-eQTL 5.46e-01 -0.0427 0.0706 0.613 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.83e-01 -0.0996 0.0926 0.613 B_Memory LOneK1K
ENSG00000162607 USP1 328167 sc-eQTL 4.58e-01 0.0669 0.09 0.613 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -758908 sc-eQTL 3.71e-01 -0.0866 0.0966 0.613 B_Memory LOneK1K
ENSG00000079739 PGM1 -828947 sc-eQTL 3.13e-01 0.0944 0.0933 0.613 B_Naive LOneK1K
ENSG00000088035 ALG6 -603111 sc-eQTL 5.86e-01 0.0525 0.0962 0.613 B_Naive LOneK1K
ENSG00000116641 DOCK7 76078 sc-eQTL 5.62e-01 -0.0522 0.0898 0.613 B_Naive LOneK1K
ENSG00000125703 ATG4C -19668 sc-eQTL 2.13e-02 0.157 0.0678 0.613 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -829257 sc-eQTL 2.49e-01 -0.112 0.0967 0.613 B_Naive LOneK1K
ENSG00000162607 USP1 328167 sc-eQTL 3.61e-01 -0.0761 0.0832 0.613 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -758908 sc-eQTL 1.95e-01 -0.126 0.0971 0.613 B_Naive LOneK1K
ENSG00000079739 PGM1 -828947 sc-eQTL 3.73e-01 0.0777 0.0871 0.613 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -603111 sc-eQTL 3.60e-02 -0.176 0.0836 0.613 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 76078 sc-eQTL 5.31e-01 0.0533 0.085 0.613 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -19668 sc-eQTL 2.26e-01 0.0711 0.0586 0.613 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -829257 sc-eQTL 3.03e-01 0.0896 0.0868 0.613 CD14_Mono LOneK1K
ENSG00000162607 USP1 328167 sc-eQTL 4.66e-01 -0.0542 0.0743 0.613 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 569615 sc-eQTL 8.44e-01 0.0159 0.0806 0.613 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -828947 sc-eQTL 7.30e-01 0.0289 0.0837 0.614 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -603111 sc-eQTL 2.48e-01 0.11 0.0947 0.614 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 76078 sc-eQTL 6.88e-01 0.0378 0.094 0.614 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -19668 sc-eQTL 9.67e-01 0.00329 0.0802 0.614 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -829257 sc-eQTL 5.71e-01 0.0527 0.093 0.614 CD16_Mono LOneK1K
ENSG00000162607 USP1 328167 sc-eQTL 5.03e-01 -0.0587 0.0874 0.614 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 569615 sc-eQTL 6.15e-02 -0.111 0.0592 0.614 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -828947 sc-eQTL 4.73e-01 0.0525 0.073 0.612 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -603111 sc-eQTL 9.45e-01 0.00606 0.0877 0.612 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 76078 sc-eQTL 3.31e-02 0.167 0.0777 0.612 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -19668 sc-eQTL 9.68e-01 0.00315 0.0784 0.612 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -829257 sc-eQTL 9.20e-01 0.00936 0.093 0.612 NK_CD56dim LOneK1K
ENSG00000162607 USP1 328167 sc-eQTL 5.75e-01 -0.0473 0.0843 0.612 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -758908 sc-eQTL 7.18e-01 0.0371 0.103 0.612 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 76096 eQTL 8.18e-07 0.112 0.0226 0.0 0.0 0.349
ENSG00000125703 ATG4C -19668 eQTL 4.29e-06 0.0796 0.0172 0.0197 0.0186 0.349
ENSG00000132855 ANGPTL3 166977 pQTL 0.0118 0.0768 0.0305 0.0 0.0 0.356
ENSG00000142856 ITGB3BP -829257 eQTL 0.00293 -0.0902 0.0302 0.0 0.0 0.349
ENSG00000162607 USP1 328167 eQTL 0.000456 0.0466 0.0133 0.0 0.0 0.349

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 76096 5.29e-06 7.1e-06 6.27e-07 3.47e-06 1.7e-06 1.68e-06 8.6e-06 1.1e-06 4.8e-06 2.76e-06 8.06e-06 2.82e-06 1.01e-05 2.5e-06 1.04e-06 4.09e-06 3.62e-06 3.67e-06 1.44e-06 1.41e-06 2.71e-06 5.66e-06 5.34e-06 1.93e-06 9.83e-06 2.01e-06 2.28e-06 1.53e-06 6.66e-06 7.79e-06 2.72e-06 5.42e-07 4.82e-07 2.22e-06 2.01e-06 1.13e-06 1.07e-06 4.57e-07 9.69e-07 5.49e-07 6.18e-07 8.42e-06 5.62e-07 1.62e-07 6.11e-07 1.28e-06 1.13e-06 6.6e-07 4.07e-07
ENSG00000125703 ATG4C -19668 1.25e-05 1.38e-05 2.53e-06 8.75e-06 2.45e-06 6.2e-06 2.03e-05 2.14e-06 1.28e-05 6.52e-06 1.82e-05 7.15e-06 2.57e-05 5.79e-06 4.39e-06 8.56e-06 8.79e-06 1.21e-05 3.78e-06 4.08e-06 7.19e-06 1.31e-05 1.43e-05 4.96e-06 2.49e-05 4.71e-06 7.13e-06 5.42e-06 1.65e-05 1.89e-05 8.88e-06 9.49e-07 1.47e-06 4.3e-06 6.13e-06 3.86e-06 1.79e-06 2.3e-06 3.21e-06 2.05e-06 1.21e-06 1.96e-05 2.14e-06 2.03e-07 1.07e-06 2.27e-06 2.42e-06 8.29e-07 5.38e-07
ENSG00000142856 ITGB3BP -829257 2.74e-07 1.3e-07 4.47e-08 2.01e-07 9.21e-08 9.9e-08 1.61e-07 5.43e-08 1.44e-07 5.42e-08 1.54e-07 8.55e-08 1.52e-07 6.76e-08 6.02e-08 7.53e-08 4.09e-08 1.33e-07 5.75e-08 4.16e-08 1.21e-07 1.24e-07 1.44e-07 2.95e-08 1.63e-07 1.14e-07 1.07e-07 9.61e-08 1.16e-07 1.07e-07 9.92e-08 3.64e-08 3.61e-08 8.56e-08 3.63e-08 3.2e-08 5.22e-08 9.26e-08 6.86e-08 4.19e-08 5.14e-08 1.46e-07 4.52e-08 1.27e-08 5.15e-08 1.89e-08 1.18e-07 3.78e-09 5.02e-08
ENSG00000162607 USP1 328167 1.26e-06 9.19e-07 1.59e-07 5.92e-07 9.23e-08 4.23e-07 1.02e-06 2.68e-07 8.92e-07 3.24e-07 1.32e-06 5.75e-07 1.53e-06 2.57e-07 4.21e-07 4.84e-07 7.7e-07 5.72e-07 3.5e-07 3.72e-07 2.8e-07 8.66e-07 7.78e-07 3.96e-07 1.98e-06 2.4e-07 5.56e-07 4.94e-07 9.4e-07 1.09e-06 4.65e-07 3.28e-08 9.89e-08 4.16e-07 4e-07 2.94e-07 3.1e-07 1.21e-07 1.44e-07 3.01e-08 1.45e-07 1.44e-06 6.44e-08 1.28e-08 2.03e-07 7.43e-08 1.83e-07 8.49e-08 6.27e-08