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Genes within 1Mb (chr1:62760152:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833259 sc-eQTL 5.72e-01 0.0452 0.0797 0.6 B L1
ENSG00000088035 ALG6 -607423 sc-eQTL 6.37e-01 -0.039 0.0826 0.6 B L1
ENSG00000116641 DOCK7 71766 sc-eQTL 7.75e-01 -0.0236 0.0826 0.6 B L1
ENSG00000125703 ATG4C -23980 sc-eQTL 3.78e-01 0.0507 0.0573 0.6 B L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 2.53e-01 -0.104 0.0911 0.6 B L1
ENSG00000162607 USP1 323855 sc-eQTL 7.88e-01 0.0214 0.0793 0.6 B L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.67e-01 -0.129 0.0932 0.6 B L1
ENSG00000079739 PGM1 -833259 sc-eQTL 6.94e-01 0.0269 0.0682 0.6 CD4T L1
ENSG00000088035 ALG6 -607423 sc-eQTL 6.23e-01 -0.037 0.0753 0.6 CD4T L1
ENSG00000116641 DOCK7 71766 sc-eQTL 5.39e-01 0.0469 0.0762 0.6 CD4T L1
ENSG00000125703 ATG4C -23980 sc-eQTL 5.55e-01 0.0364 0.0615 0.6 CD4T L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 5.09e-01 0.0577 0.0873 0.6 CD4T L1
ENSG00000162607 USP1 323855 sc-eQTL 7.43e-01 0.0196 0.0597 0.6 CD4T L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.04e-01 0.127 0.078 0.6 CD4T L1
ENSG00000079739 PGM1 -833259 sc-eQTL 9.80e-01 -0.00186 0.0756 0.6 CD8T L1
ENSG00000088035 ALG6 -607423 sc-eQTL 6.14e-01 -0.0421 0.0833 0.6 CD8T L1
ENSG00000116641 DOCK7 71766 sc-eQTL 9.26e-01 -0.0079 0.0845 0.6 CD8T L1
ENSG00000125703 ATG4C -23980 sc-eQTL 4.29e-02 0.162 0.0795 0.6 CD8T L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 6.40e-01 0.042 0.0897 0.6 CD8T L1
ENSG00000162607 USP1 323855 sc-eQTL 7.11e-01 -0.0259 0.0699 0.6 CD8T L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 6.01e-01 0.0469 0.0894 0.6 CD8T L1
ENSG00000079739 PGM1 -833259 sc-eQTL 4.52e-01 -0.0637 0.0845 0.599 DC L1
ENSG00000088035 ALG6 -607423 sc-eQTL 8.14e-01 0.0206 0.0873 0.599 DC L1
ENSG00000116641 DOCK7 71766 sc-eQTL 8.33e-01 0.0189 0.0895 0.599 DC L1
ENSG00000125703 ATG4C -23980 sc-eQTL 7.24e-01 -0.0248 0.07 0.599 DC L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.62e-01 -0.017 0.0979 0.599 DC L1
ENSG00000162607 USP1 323855 sc-eQTL 7.40e-01 0.0284 0.0854 0.599 DC L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 4.19e-01 -0.0688 0.0851 0.599 DC L1
ENSG00000079739 PGM1 -833259 sc-eQTL 3.01e-01 0.085 0.0819 0.6 Mono L1
ENSG00000088035 ALG6 -607423 sc-eQTL 7.78e-02 -0.151 0.0851 0.6 Mono L1
ENSG00000116641 DOCK7 71766 sc-eQTL 1.97e-01 0.107 0.0826 0.6 Mono L1
ENSG00000125703 ATG4C -23980 sc-eQTL 1.77e-01 0.0756 0.0558 0.6 Mono L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.76e-01 0.0784 0.0884 0.6 Mono L1
ENSG00000162607 USP1 323855 sc-eQTL 5.64e-01 -0.042 0.0727 0.6 Mono L1
ENSG00000240563 L1TD1 565303 sc-eQTL 3.44e-01 -0.0642 0.0677 0.6 Mono L1
ENSG00000079739 PGM1 -833259 sc-eQTL 5.30e-01 0.0448 0.0713 0.601 NK L1
ENSG00000088035 ALG6 -607423 sc-eQTL 9.81e-01 -0.00201 0.0837 0.601 NK L1
ENSG00000116641 DOCK7 71766 sc-eQTL 7.65e-02 0.122 0.0684 0.601 NK L1
ENSG00000125703 ATG4C -23980 sc-eQTL 8.89e-01 -0.0103 0.074 0.601 NK L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 9.77e-01 0.00267 0.092 0.601 NK L1
ENSG00000162607 USP1 323855 sc-eQTL 6.52e-01 -0.0371 0.0822 0.601 NK L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 8.76e-01 -0.0156 0.0999 0.601 NK L1
ENSG00000079739 PGM1 -833259 sc-eQTL 3.41e-01 -0.0756 0.0792 0.6 Other_T L1
ENSG00000088035 ALG6 -607423 sc-eQTL 2.45e-01 0.0927 0.0795 0.6 Other_T L1
ENSG00000116641 DOCK7 71766 sc-eQTL 5.90e-01 0.0439 0.0814 0.6 Other_T L1
ENSG00000125703 ATG4C -23980 sc-eQTL 5.18e-03 0.196 0.0692 0.6 Other_T L1
ENSG00000142856 ITGB3BP -833569 sc-eQTL 2.59e-01 -0.0705 0.0623 0.6 Other_T L1
ENSG00000162607 USP1 323855 sc-eQTL 8.56e-01 -0.00985 0.0542 0.6 Other_T L1
ENSG00000203965 EFCAB7 -763220 sc-eQTL 2.91e-01 0.102 0.0962 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833259 sc-eQTL 7.91e-01 -0.0293 0.11 0.599 B_Activated L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.42e-01 -0.0646 0.106 0.599 B_Activated L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.79e-01 -0.00265 0.0985 0.599 B_Activated L2
ENSG00000125703 ATG4C -23980 sc-eQTL 6.11e-01 -0.0528 0.104 0.599 B_Activated L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 4.89e-02 -0.199 0.1 0.599 B_Activated L2
ENSG00000162607 USP1 323855 sc-eQTL 9.33e-01 0.00929 0.11 0.599 B_Activated L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 7.52e-01 0.0303 0.0958 0.599 B_Activated L2
ENSG00000079739 PGM1 -833259 sc-eQTL 5.65e-01 -0.0562 0.0975 0.601 B_Intermediate L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.72e-01 -0.0713 0.099 0.601 B_Intermediate L2
ENSG00000116641 DOCK7 71766 sc-eQTL 6.35e-01 0.045 0.0947 0.601 B_Intermediate L2
ENSG00000125703 ATG4C -23980 sc-eQTL 5.77e-01 -0.0448 0.0801 0.601 B_Intermediate L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.50e-01 -0.0181 0.0955 0.601 B_Intermediate L2
ENSG00000162607 USP1 323855 sc-eQTL 6.90e-01 0.0381 0.0953 0.601 B_Intermediate L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.47e-01 -0.137 0.0941 0.601 B_Intermediate L2
ENSG00000079739 PGM1 -833259 sc-eQTL 8.93e-01 -0.0128 0.0952 0.599 B_Memory L2
ENSG00000088035 ALG6 -607423 sc-eQTL 6.02e-01 -0.0506 0.0967 0.599 B_Memory L2
ENSG00000116641 DOCK7 71766 sc-eQTL 5.95e-01 0.0483 0.0907 0.599 B_Memory L2
ENSG00000125703 ATG4C -23980 sc-eQTL 9.78e-01 -0.00233 0.0863 0.599 B_Memory L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 9.59e-01 0.00503 0.0987 0.599 B_Memory L2
ENSG00000162607 USP1 323855 sc-eQTL 3.71e-01 0.0892 0.0994 0.599 B_Memory L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 6.85e-01 0.0398 0.098 0.599 B_Memory L2
ENSG00000079739 PGM1 -833259 sc-eQTL 8.45e-01 0.0188 0.0956 0.6 B_Naive1 L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.67e-01 0.0551 0.0959 0.6 B_Naive1 L2
ENSG00000116641 DOCK7 71766 sc-eQTL 1.93e-01 -0.12 0.0916 0.6 B_Naive1 L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.01e-02 0.145 0.0702 0.6 B_Naive1 L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.74e-01 -0.0836 0.0938 0.6 B_Naive1 L2
ENSG00000162607 USP1 323855 sc-eQTL 2.78e-01 -0.0896 0.0824 0.6 B_Naive1 L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.88e-01 -0.132 0.0999 0.6 B_Naive1 L2
ENSG00000079739 PGM1 -833259 sc-eQTL 3.44e-01 0.0898 0.0947 0.601 B_Naive2 L2
ENSG00000088035 ALG6 -607423 sc-eQTL 2.86e-01 -0.106 0.0987 0.601 B_Naive2 L2
ENSG00000116641 DOCK7 71766 sc-eQTL 7.46e-01 0.0309 0.0951 0.601 B_Naive2 L2
ENSG00000125703 ATG4C -23980 sc-eQTL 9.48e-01 -0.00602 0.0916 0.601 B_Naive2 L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.74e-01 -0.0157 0.0993 0.601 B_Naive2 L2
ENSG00000162607 USP1 323855 sc-eQTL 8.00e-01 0.024 0.0945 0.601 B_Naive2 L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 7.05e-01 -0.0374 0.0988 0.601 B_Naive2 L2
ENSG00000079739 PGM1 -833259 sc-eQTL 4.60e-02 -0.189 0.0942 0.593 CD4_CTL L2
ENSG00000088035 ALG6 -607423 sc-eQTL 8.59e-01 0.0179 0.101 0.593 CD4_CTL L2
ENSG00000116641 DOCK7 71766 sc-eQTL 1.15e-01 0.138 0.0874 0.593 CD4_CTL L2
ENSG00000125703 ATG4C -23980 sc-eQTL 7.53e-01 0.0287 0.091 0.593 CD4_CTL L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 2.91e-02 0.211 0.0962 0.593 CD4_CTL L2
ENSG00000162607 USP1 323855 sc-eQTL 9.18e-01 0.00958 0.0926 0.593 CD4_CTL L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 3.92e-01 -0.0793 0.0923 0.593 CD4_CTL L2
ENSG00000079739 PGM1 -833259 sc-eQTL 3.84e-01 0.0666 0.0764 0.6 CD4_Naive L2
ENSG00000088035 ALG6 -607423 sc-eQTL 7.55e-01 0.0259 0.0831 0.6 CD4_Naive L2
ENSG00000116641 DOCK7 71766 sc-eQTL 8.11e-01 -0.0195 0.0817 0.6 CD4_Naive L2
ENSG00000125703 ATG4C -23980 sc-eQTL 9.04e-01 0.00873 0.0722 0.6 CD4_Naive L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.36e-01 -0.0183 0.0882 0.6 CD4_Naive L2
ENSG00000162607 USP1 323855 sc-eQTL 4.41e-01 0.052 0.0673 0.6 CD4_Naive L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.54e-02 0.211 0.0864 0.6 CD4_Naive L2
ENSG00000079739 PGM1 -833259 sc-eQTL 8.04e-01 0.0198 0.0799 0.6 CD4_TCM L2
ENSG00000088035 ALG6 -607423 sc-eQTL 8.63e-02 -0.159 0.0922 0.6 CD4_TCM L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.25e-01 -0.00772 0.0822 0.6 CD4_TCM L2
ENSG00000125703 ATG4C -23980 sc-eQTL 5.70e-01 0.0455 0.08 0.6 CD4_TCM L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.92e-01 0.0808 0.0942 0.6 CD4_TCM L2
ENSG00000162607 USP1 323855 sc-eQTL 8.69e-01 -0.0128 0.0774 0.6 CD4_TCM L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 4.30e-01 0.0722 0.0912 0.6 CD4_TCM L2
ENSG00000079739 PGM1 -833259 sc-eQTL 7.08e-01 0.0352 0.094 0.6 CD4_TEM L2
ENSG00000088035 ALG6 -607423 sc-eQTL 2.76e-01 -0.103 0.0943 0.6 CD4_TEM L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.59e-01 0.00478 0.0922 0.6 CD4_TEM L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.61e-01 0.066 0.0894 0.6 CD4_TEM L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 6.90e-01 0.0368 0.0924 0.6 CD4_TEM L2
ENSG00000162607 USP1 323855 sc-eQTL 6.79e-01 0.0363 0.0875 0.6 CD4_TEM L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 2.27e-01 -0.116 0.0954 0.6 CD4_TEM L2
ENSG00000079739 PGM1 -833259 sc-eQTL 1.56e-01 0.122 0.0856 0.6 CD8_CTL L2
ENSG00000088035 ALG6 -607423 sc-eQTL 3.80e-01 -0.0803 0.0913 0.6 CD8_CTL L2
ENSG00000116641 DOCK7 71766 sc-eQTL 2.39e-01 0.102 0.0865 0.6 CD8_CTL L2
ENSG00000125703 ATG4C -23980 sc-eQTL 2.85e-02 0.201 0.0913 0.6 CD8_CTL L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 9.27e-01 -0.00886 0.096 0.6 CD8_CTL L2
ENSG00000162607 USP1 323855 sc-eQTL 7.87e-01 0.0233 0.086 0.6 CD8_CTL L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 3.28e-01 0.0963 0.0982 0.6 CD8_CTL L2
ENSG00000079739 PGM1 -833259 sc-eQTL 8.81e-01 0.0131 0.0876 0.6 CD8_Naive L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.63e-01 -0.0666 0.0906 0.6 CD8_Naive L2
ENSG00000116641 DOCK7 71766 sc-eQTL 3.19e-02 -0.2 0.0927 0.6 CD8_Naive L2
ENSG00000125703 ATG4C -23980 sc-eQTL 2.15e-01 0.111 0.0897 0.6 CD8_Naive L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 6.15e-01 0.0459 0.0911 0.6 CD8_Naive L2
ENSG00000162607 USP1 323855 sc-eQTL 9.12e-01 0.00852 0.077 0.6 CD8_Naive L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 5.59e-01 0.0502 0.0858 0.6 CD8_Naive L2
ENSG00000079739 PGM1 -833259 sc-eQTL 3.07e-03 -0.287 0.0956 0.597 CD8_TCM L2
ENSG00000088035 ALG6 -607423 sc-eQTL 1.54e-01 0.141 0.0985 0.597 CD8_TCM L2
ENSG00000116641 DOCK7 71766 sc-eQTL 7.85e-01 0.0264 0.0966 0.597 CD8_TCM L2
ENSG00000125703 ATG4C -23980 sc-eQTL 7.77e-01 -0.028 0.0988 0.597 CD8_TCM L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.17e-01 0.0961 0.0957 0.597 CD8_TCM L2
ENSG00000162607 USP1 323855 sc-eQTL 9.25e-01 0.00867 0.0924 0.597 CD8_TCM L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.01e-02 0.25 0.0962 0.597 CD8_TCM L2
ENSG00000079739 PGM1 -833259 sc-eQTL 5.18e-01 0.0651 0.1 0.605 CD8_TEM L2
ENSG00000088035 ALG6 -607423 sc-eQTL 6.34e-02 0.187 0.1 0.605 CD8_TEM L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.73e-01 0.00327 0.0979 0.605 CD8_TEM L2
ENSG00000125703 ATG4C -23980 sc-eQTL 6.72e-02 0.172 0.0933 0.605 CD8_TEM L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 5.20e-01 0.0655 0.102 0.605 CD8_TEM L2
ENSG00000162607 USP1 323855 sc-eQTL 3.25e-01 -0.0956 0.0969 0.605 CD8_TEM L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 9.74e-01 0.00316 0.0988 0.605 CD8_TEM L2
ENSG00000079739 PGM1 -833259 sc-eQTL 1.13e-01 -0.145 0.091 0.597 MAIT L2
ENSG00000088035 ALG6 -607423 sc-eQTL 8.82e-01 0.0135 0.0907 0.597 MAIT L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.44e-01 0.00607 0.0869 0.597 MAIT L2
ENSG00000125703 ATG4C -23980 sc-eQTL 3.07e-02 0.197 0.0906 0.597 MAIT L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.31e-01 -0.0196 0.0918 0.597 MAIT L2
ENSG00000162607 USP1 323855 sc-eQTL 3.83e-01 0.0794 0.0909 0.597 MAIT L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 2.62e-01 0.106 0.0942 0.597 MAIT L2
ENSG00000079739 PGM1 -833259 sc-eQTL 7.69e-01 -0.0275 0.0934 0.598 NK_CD56bright L2
ENSG00000088035 ALG6 -607423 sc-eQTL 8.21e-01 -0.0218 0.0958 0.598 NK_CD56bright L2
ENSG00000116641 DOCK7 71766 sc-eQTL 1.24e-01 -0.128 0.0825 0.598 NK_CD56bright L2
ENSG00000125703 ATG4C -23980 sc-eQTL 2.41e-01 -0.109 0.0924 0.598 NK_CD56bright L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 7.21e-01 -0.0345 0.0965 0.598 NK_CD56bright L2
ENSG00000162607 USP1 323855 sc-eQTL 4.48e-01 0.0756 0.0994 0.598 NK_CD56bright L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.27e-01 -0.145 0.0947 0.598 NK_CD56bright L2
ENSG00000079739 PGM1 -833259 sc-eQTL 2.84e-01 -0.0795 0.074 0.599 NK_CD56dim L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.39e-01 -0.0578 0.094 0.599 NK_CD56dim L2
ENSG00000116641 DOCK7 71766 sc-eQTL 1.35e-01 0.122 0.0814 0.599 NK_CD56dim L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.47e-01 -0.0633 0.083 0.599 NK_CD56dim L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.31e-01 -0.0203 0.0946 0.599 NK_CD56dim L2
ENSG00000162607 USP1 323855 sc-eQTL 8.19e-01 -0.021 0.0918 0.599 NK_CD56dim L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 9.69e-01 0.00397 0.102 0.599 NK_CD56dim L2
ENSG00000079739 PGM1 -833259 sc-eQTL 2.68e-01 0.11 0.0989 0.605 NK_HLA L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.90e-01 -0.0711 0.103 0.605 NK_HLA L2
ENSG00000116641 DOCK7 71766 sc-eQTL 4.86e-01 0.0548 0.0786 0.605 NK_HLA L2
ENSG00000125703 ATG4C -23980 sc-eQTL 1.70e-01 0.125 0.091 0.605 NK_HLA L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.62e-01 0.0167 0.096 0.605 NK_HLA L2
ENSG00000162607 USP1 323855 sc-eQTL 9.75e-01 0.00321 0.101 0.605 NK_HLA L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 3.78e-01 0.0806 0.0913 0.605 NK_HLA L2
ENSG00000079739 PGM1 -833259 sc-eQTL 2.33e-01 0.0956 0.0799 0.599 NK_cytokine L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.41e-02 0.174 0.0898 0.599 NK_cytokine L2
ENSG00000116641 DOCK7 71766 sc-eQTL 1.62e-01 0.117 0.0835 0.599 NK_cytokine L2
ENSG00000125703 ATG4C -23980 sc-eQTL 6.09e-01 0.0439 0.0858 0.599 NK_cytokine L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 8.40e-01 -0.018 0.0889 0.599 NK_cytokine L2
ENSG00000162607 USP1 323855 sc-eQTL 5.66e-01 -0.0537 0.0934 0.599 NK_cytokine L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 3.07e-01 0.0967 0.0945 0.599 NK_cytokine L2
ENSG00000079739 PGM1 -833259 sc-eQTL 8.47e-01 0.0207 0.107 0.604 PB L2
ENSG00000088035 ALG6 -607423 sc-eQTL 7.64e-01 -0.0337 0.112 0.604 PB L2
ENSG00000116641 DOCK7 71766 sc-eQTL 8.58e-01 -0.0215 0.12 0.604 PB L2
ENSG00000125703 ATG4C -23980 sc-eQTL 3.17e-01 0.105 0.104 0.604 PB L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 7.09e-01 -0.0389 0.104 0.604 PB L2
ENSG00000162607 USP1 323855 sc-eQTL 7.67e-01 0.0308 0.104 0.604 PB L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 6.06e-01 0.0592 0.114 0.604 PB L2
ENSG00000079739 PGM1 -833259 sc-eQTL 9.11e-01 0.00964 0.086 0.6 Pro_T L2
ENSG00000088035 ALG6 -607423 sc-eQTL 7.58e-01 0.0269 0.0875 0.6 Pro_T L2
ENSG00000116641 DOCK7 71766 sc-eQTL 2.81e-01 0.0947 0.0876 0.6 Pro_T L2
ENSG00000125703 ATG4C -23980 sc-eQTL 6.54e-01 0.0345 0.0769 0.6 Pro_T L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.12e-02 -0.165 0.0763 0.6 Pro_T L2
ENSG00000162607 USP1 323855 sc-eQTL 7.11e-01 0.0197 0.053 0.6 Pro_T L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 1.62e-01 0.125 0.0892 0.6 Pro_T L2
ENSG00000079739 PGM1 -833259 sc-eQTL 9.23e-01 -0.00885 0.091 0.6 Treg L2
ENSG00000088035 ALG6 -607423 sc-eQTL 9.83e-01 -0.00202 0.0973 0.6 Treg L2
ENSG00000116641 DOCK7 71766 sc-eQTL 5.08e-01 0.0592 0.0892 0.6 Treg L2
ENSG00000125703 ATG4C -23980 sc-eQTL 7.48e-01 0.0294 0.0913 0.6 Treg L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 1.97e-01 0.123 0.0951 0.6 Treg L2
ENSG00000162607 USP1 323855 sc-eQTL 6.55e-01 -0.0413 0.0923 0.6 Treg L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 9.84e-01 -0.00178 0.0914 0.6 Treg L2
ENSG00000079739 PGM1 -833259 sc-eQTL 4.92e-01 -0.0624 0.0906 0.595 cDC L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.56e-02 -0.175 0.0911 0.595 cDC L2
ENSG00000116641 DOCK7 71766 sc-eQTL 3.58e-01 0.083 0.0901 0.595 cDC L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.80e-01 -0.0554 0.0783 0.595 cDC L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 6.88e-01 0.04 0.0993 0.595 cDC L2
ENSG00000162607 USP1 323855 sc-eQTL 7.70e-01 0.0259 0.0884 0.595 cDC L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 9.56e-01 0.00445 0.0798 0.595 cDC L2
ENSG00000079739 PGM1 -833259 sc-eQTL 1.91e-01 0.111 0.0845 0.6 cMono_IL1B L2
ENSG00000088035 ALG6 -607423 sc-eQTL 8.08e-02 -0.148 0.0843 0.6 cMono_IL1B L2
ENSG00000116641 DOCK7 71766 sc-eQTL 4.56e-01 0.0668 0.0894 0.6 cMono_IL1B L2
ENSG00000125703 ATG4C -23980 sc-eQTL 3.87e-01 0.0544 0.0629 0.6 cMono_IL1B L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.98e-01 0.0755 0.0891 0.6 cMono_IL1B L2
ENSG00000162607 USP1 323855 sc-eQTL 8.65e-01 -0.0134 0.0787 0.6 cMono_IL1B L2
ENSG00000240563 L1TD1 565303 sc-eQTL 7.47e-01 -0.0255 0.079 0.6 cMono_IL1B L2
ENSG00000079739 PGM1 -833259 sc-eQTL 4.34e-01 0.0734 0.0937 0.6 cMono_S100A L2
ENSG00000088035 ALG6 -607423 sc-eQTL 1.57e-01 -0.134 0.0946 0.6 cMono_S100A L2
ENSG00000116641 DOCK7 71766 sc-eQTL 4.36e-01 0.0687 0.088 0.6 cMono_S100A L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.71e-01 0.055 0.0762 0.6 cMono_S100A L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 2.92e-01 0.0907 0.0859 0.6 cMono_S100A L2
ENSG00000162607 USP1 323855 sc-eQTL 5.61e-01 -0.0516 0.0885 0.6 cMono_S100A L2
ENSG00000240563 L1TD1 565303 sc-eQTL 5.96e-01 0.0391 0.0737 0.6 cMono_S100A L2
ENSG00000079739 PGM1 -833259 sc-eQTL 4.18e-01 -0.0869 0.107 0.597 gdT L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.71e-01 -0.0825 0.114 0.597 gdT L2
ENSG00000116641 DOCK7 71766 sc-eQTL 4.87e-01 0.078 0.112 0.597 gdT L2
ENSG00000125703 ATG4C -23980 sc-eQTL 4.06e-01 -0.0892 0.107 0.597 gdT L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.78e-01 -0.1 0.113 0.597 gdT L2
ENSG00000162607 USP1 323855 sc-eQTL 2.00e-01 -0.138 0.107 0.597 gdT L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 8.48e-01 -0.0214 0.112 0.597 gdT L2
ENSG00000079739 PGM1 -833259 sc-eQTL 5.66e-01 0.0536 0.0933 0.602 intMono L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.89e-01 0.0602 0.0868 0.602 intMono L2
ENSG00000116641 DOCK7 71766 sc-eQTL 2.90e-01 0.0939 0.0885 0.602 intMono L2
ENSG00000125703 ATG4C -23980 sc-eQTL 8.02e-01 -0.0213 0.0847 0.602 intMono L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 7.62e-01 0.0284 0.0934 0.602 intMono L2
ENSG00000162607 USP1 323855 sc-eQTL 4.77e-01 -0.0676 0.0948 0.602 intMono L2
ENSG00000240563 L1TD1 565303 sc-eQTL 3.16e-01 -0.0701 0.0697 0.602 intMono L2
ENSG00000079739 PGM1 -833259 sc-eQTL 9.69e-01 -0.00334 0.086 0.604 ncMono L2
ENSG00000088035 ALG6 -607423 sc-eQTL 4.03e-01 0.079 0.0943 0.604 ncMono L2
ENSG00000116641 DOCK7 71766 sc-eQTL 9.40e-01 -0.00697 0.093 0.604 ncMono L2
ENSG00000125703 ATG4C -23980 sc-eQTL 2.87e-01 0.0925 0.0866 0.604 ncMono L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 5.17e-01 0.0589 0.0908 0.604 ncMono L2
ENSG00000162607 USP1 323855 sc-eQTL 8.04e-01 -0.0231 0.0928 0.604 ncMono L2
ENSG00000240563 L1TD1 565303 sc-eQTL 3.19e-01 -0.0656 0.0657 0.604 ncMono L2
ENSG00000079739 PGM1 -833259 sc-eQTL 4.77e-01 -0.073 0.102 0.599 pDC L2
ENSG00000088035 ALG6 -607423 sc-eQTL 5.52e-02 0.191 0.0988 0.599 pDC L2
ENSG00000116641 DOCK7 71766 sc-eQTL 6.18e-01 -0.0509 0.102 0.599 pDC L2
ENSG00000125703 ATG4C -23980 sc-eQTL 5.16e-01 0.0595 0.0915 0.599 pDC L2
ENSG00000142856 ITGB3BP -833569 sc-eQTL 7.76e-02 -0.181 0.102 0.599 pDC L2
ENSG00000162607 USP1 323855 sc-eQTL 2.59e-01 0.118 0.104 0.599 pDC L2
ENSG00000203965 EFCAB7 -763220 sc-eQTL 7.32e-01 -0.0312 0.091 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833259 sc-eQTL 6.32e-01 -0.0434 0.0904 0.6 B_Memory LOneK1K
ENSG00000088035 ALG6 -607423 sc-eQTL 2.25e-01 -0.121 0.0997 0.6 B_Memory LOneK1K
ENSG00000116641 DOCK7 71766 sc-eQTL 2.44e-01 0.101 0.0866 0.6 B_Memory LOneK1K
ENSG00000125703 ATG4C -23980 sc-eQTL 6.01e-01 -0.0368 0.0702 0.6 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -833569 sc-eQTL 3.76e-01 -0.0817 0.0921 0.6 B_Memory LOneK1K
ENSG00000162607 USP1 323855 sc-eQTL 2.41e-01 0.105 0.0893 0.6 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -763220 sc-eQTL 4.62e-01 -0.0707 0.096 0.6 B_Memory LOneK1K
ENSG00000079739 PGM1 -833259 sc-eQTL 5.55e-01 0.0548 0.0927 0.6 B_Naive LOneK1K
ENSG00000088035 ALG6 -607423 sc-eQTL 8.72e-01 0.0154 0.0956 0.6 B_Naive LOneK1K
ENSG00000116641 DOCK7 71766 sc-eQTL 5.13e-01 -0.0584 0.0891 0.6 B_Naive LOneK1K
ENSG00000125703 ATG4C -23980 sc-eQTL 3.75e-02 0.141 0.0674 0.6 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -833569 sc-eQTL 4.34e-01 -0.0754 0.0961 0.6 B_Naive LOneK1K
ENSG00000162607 USP1 323855 sc-eQTL 5.41e-01 -0.0506 0.0826 0.6 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -763220 sc-eQTL 2.51e-01 -0.111 0.0965 0.6 B_Naive LOneK1K
ENSG00000079739 PGM1 -833259 sc-eQTL 2.84e-01 0.0925 0.0862 0.6 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -607423 sc-eQTL 3.91e-02 -0.172 0.0829 0.6 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 71766 sc-eQTL 3.46e-01 0.0795 0.0841 0.6 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -23980 sc-eQTL 1.82e-01 0.0777 0.058 0.6 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -833569 sc-eQTL 2.24e-01 0.105 0.0859 0.6 CD14_Mono LOneK1K
ENSG00000162607 USP1 323855 sc-eQTL 4.93e-01 -0.0506 0.0736 0.6 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 565303 sc-eQTL 8.88e-01 0.0113 0.0798 0.6 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -833259 sc-eQTL 4.55e-01 0.0617 0.0824 0.601 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -607423 sc-eQTL 2.56e-01 0.106 0.0934 0.601 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 71766 sc-eQTL 5.28e-01 0.0585 0.0926 0.601 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -23980 sc-eQTL 7.62e-01 0.024 0.079 0.601 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -833569 sc-eQTL 4.56e-01 0.0685 0.0916 0.601 CD16_Mono LOneK1K
ENSG00000162607 USP1 323855 sc-eQTL 4.24e-01 -0.069 0.0861 0.601 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 565303 sc-eQTL 5.73e-02 -0.111 0.0583 0.601 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -833259 sc-eQTL 5.47e-01 0.0437 0.0724 0.599 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -607423 sc-eQTL 8.46e-01 0.0169 0.0871 0.599 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 71766 sc-eQTL 2.07e-02 0.18 0.077 0.599 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -23980 sc-eQTL 8.56e-01 -0.0141 0.0779 0.599 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -833569 sc-eQTL 9.51e-01 0.00567 0.0923 0.599 NK_CD56dim LOneK1K
ENSG00000162607 USP1 323855 sc-eQTL 3.50e-01 -0.0783 0.0836 0.599 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -763220 sc-eQTL 5.42e-01 0.0621 0.102 0.599 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 71784 eQTL 1.16e-11 0.151 0.0219 0.0 0.0 0.373
ENSG00000125703 ATG4C -23980 eQTL 1.21e-05 0.0743 0.0169 0.00702 0.00683 0.373
ENSG00000132855 ANGPTL3 162665 pQTL 0.000624 0.102 0.0299 0.0 0.0 0.381
ENSG00000142856 ITGB3BP -833569 eQTL 0.00297 -0.0882 0.0296 0.0 0.0 0.373
ENSG00000162607 USP1 323855 eQTL 0.000294 0.0472 0.013 0.0 0.0 0.373

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 71784 1.04e-05 1.3e-05 1.85e-06 7.29e-06 2.42e-06 4.74e-06 1.19e-05 2.12e-06 1.04e-05 5.31e-06 1.39e-05 6.14e-06 1.88e-05 4.46e-06 3.4e-06 6.97e-06 5.91e-06 8.09e-06 2.89e-06 2.82e-06 5.79e-06 1.06e-05 9.94e-06 3.4e-06 1.83e-05 3.88e-06 6.02e-06 4.61e-06 1.2e-05 9.37e-06 6.76e-06 9.71e-07 1.21e-06 3.24e-06 5.12e-06 2.67e-06 1.73e-06 1.82e-06 2.16e-06 1e-06 8.61e-07 1.57e-05 1.54e-06 1.68e-07 7.72e-07 1.74e-06 1.78e-06 7.02e-07 4.47e-07
ENSG00000125703 ATG4C -23980 1.86e-05 2.61e-05 3.73e-06 1.29e-05 3.1e-06 8.57e-06 2.75e-05 3.47e-06 1.85e-05 9.43e-06 2.55e-05 9.59e-06 3.69e-05 9.56e-06 5.35e-06 1.11e-05 1.06e-05 1.59e-05 5.56e-06 4.69e-06 8.72e-06 2.04e-05 2.09e-05 5.59e-06 3.04e-05 5.34e-06 8.36e-06 8.11e-06 2.18e-05 1.85e-05 1.29e-05 1.19e-06 1.68e-06 4.93e-06 8.5e-06 4.37e-06 1.84e-06 2.73e-06 3.25e-06 2.27e-06 1.12e-06 2.84e-05 2.66e-06 1.88e-07 1.37e-06 2.69e-06 3.24e-06 1.11e-06 1.03e-06
ENSG00000142856 ITGB3BP -833569 2.74e-07 1.3e-07 4.48e-08 1.81e-07 8.83e-08 9.65e-08 1.53e-07 5.33e-08 1.45e-07 4.74e-08 1.57e-07 8.59e-08 1.47e-07 6.76e-08 6.17e-08 7.36e-08 3.93e-08 1.26e-07 5.82e-08 4e-08 1.19e-07 1.28e-07 1.44e-07 3.68e-08 1.46e-07 1.16e-07 1.07e-07 9.65e-08 1.08e-07 1.07e-07 9.7e-08 4.03e-08 3.56e-08 8.49e-08 7.51e-08 3.49e-08 5.31e-08 9.23e-08 7.2e-08 3.55e-08 4.46e-08 1.33e-07 4.17e-08 1.28e-08 5.19e-08 1.83e-08 1.22e-07 3.86e-09 4.79e-08
ENSG00000162607 USP1 323855 1.28e-06 9.73e-07 3.41e-07 9.74e-07 1.77e-07 4.63e-07 1.24e-06 2.68e-07 1.28e-06 3.82e-07 1.39e-06 5.79e-07 2.02e-06 3.03e-07 4.55e-07 8.35e-07 8.37e-07 5.45e-07 6.62e-07 6.7e-07 4.57e-07 1.19e-06 9.22e-07 5.36e-07 1.97e-06 2.99e-07 6.91e-07 7.25e-07 9.81e-07 1.26e-06 5.72e-07 3.82e-08 2.29e-07 3.58e-07 4.91e-07 4.49e-07 5.02e-07 1.57e-07 1.51e-07 7.62e-08 1.45e-07 1.59e-06 3.73e-07 8.08e-08 1.86e-07 1.26e-07 1.9e-07 7.69e-08 1.11e-07