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Genes within 1Mb (chr1:62760028:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833383 sc-eQTL 5.72e-01 0.0452 0.0797 0.6 B L1
ENSG00000088035 ALG6 -607547 sc-eQTL 6.37e-01 -0.039 0.0826 0.6 B L1
ENSG00000116641 DOCK7 71642 sc-eQTL 7.75e-01 -0.0236 0.0826 0.6 B L1
ENSG00000125703 ATG4C -24104 sc-eQTL 3.78e-01 0.0507 0.0573 0.6 B L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 2.53e-01 -0.104 0.0911 0.6 B L1
ENSG00000162607 USP1 323731 sc-eQTL 7.88e-01 0.0214 0.0793 0.6 B L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.67e-01 -0.129 0.0932 0.6 B L1
ENSG00000079739 PGM1 -833383 sc-eQTL 6.94e-01 0.0269 0.0682 0.6 CD4T L1
ENSG00000088035 ALG6 -607547 sc-eQTL 6.23e-01 -0.037 0.0753 0.6 CD4T L1
ENSG00000116641 DOCK7 71642 sc-eQTL 5.39e-01 0.0469 0.0762 0.6 CD4T L1
ENSG00000125703 ATG4C -24104 sc-eQTL 5.55e-01 0.0364 0.0615 0.6 CD4T L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 5.09e-01 0.0577 0.0873 0.6 CD4T L1
ENSG00000162607 USP1 323731 sc-eQTL 7.43e-01 0.0196 0.0597 0.6 CD4T L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.04e-01 0.127 0.078 0.6 CD4T L1
ENSG00000079739 PGM1 -833383 sc-eQTL 9.80e-01 -0.00186 0.0756 0.6 CD8T L1
ENSG00000088035 ALG6 -607547 sc-eQTL 6.14e-01 -0.0421 0.0833 0.6 CD8T L1
ENSG00000116641 DOCK7 71642 sc-eQTL 9.26e-01 -0.0079 0.0845 0.6 CD8T L1
ENSG00000125703 ATG4C -24104 sc-eQTL 4.29e-02 0.162 0.0795 0.6 CD8T L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 6.40e-01 0.042 0.0897 0.6 CD8T L1
ENSG00000162607 USP1 323731 sc-eQTL 7.11e-01 -0.0259 0.0699 0.6 CD8T L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 6.01e-01 0.0469 0.0894 0.6 CD8T L1
ENSG00000079739 PGM1 -833383 sc-eQTL 4.52e-01 -0.0637 0.0845 0.599 DC L1
ENSG00000088035 ALG6 -607547 sc-eQTL 8.14e-01 0.0206 0.0873 0.599 DC L1
ENSG00000116641 DOCK7 71642 sc-eQTL 8.33e-01 0.0189 0.0895 0.599 DC L1
ENSG00000125703 ATG4C -24104 sc-eQTL 7.24e-01 -0.0248 0.07 0.599 DC L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.62e-01 -0.017 0.0979 0.599 DC L1
ENSG00000162607 USP1 323731 sc-eQTL 7.40e-01 0.0284 0.0854 0.599 DC L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 4.19e-01 -0.0688 0.0851 0.599 DC L1
ENSG00000079739 PGM1 -833383 sc-eQTL 3.01e-01 0.085 0.0819 0.6 Mono L1
ENSG00000088035 ALG6 -607547 sc-eQTL 7.78e-02 -0.151 0.0851 0.6 Mono L1
ENSG00000116641 DOCK7 71642 sc-eQTL 1.97e-01 0.107 0.0826 0.6 Mono L1
ENSG00000125703 ATG4C -24104 sc-eQTL 1.77e-01 0.0756 0.0558 0.6 Mono L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.76e-01 0.0784 0.0884 0.6 Mono L1
ENSG00000162607 USP1 323731 sc-eQTL 5.64e-01 -0.042 0.0727 0.6 Mono L1
ENSG00000240563 L1TD1 565179 sc-eQTL 3.44e-01 -0.0642 0.0677 0.6 Mono L1
ENSG00000079739 PGM1 -833383 sc-eQTL 5.30e-01 0.0448 0.0713 0.601 NK L1
ENSG00000088035 ALG6 -607547 sc-eQTL 9.81e-01 -0.00201 0.0837 0.601 NK L1
ENSG00000116641 DOCK7 71642 sc-eQTL 7.65e-02 0.122 0.0684 0.601 NK L1
ENSG00000125703 ATG4C -24104 sc-eQTL 8.89e-01 -0.0103 0.074 0.601 NK L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 9.77e-01 0.00267 0.092 0.601 NK L1
ENSG00000162607 USP1 323731 sc-eQTL 6.52e-01 -0.0371 0.0822 0.601 NK L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 8.76e-01 -0.0156 0.0999 0.601 NK L1
ENSG00000079739 PGM1 -833383 sc-eQTL 3.41e-01 -0.0756 0.0792 0.6 Other_T L1
ENSG00000088035 ALG6 -607547 sc-eQTL 2.45e-01 0.0927 0.0795 0.6 Other_T L1
ENSG00000116641 DOCK7 71642 sc-eQTL 5.90e-01 0.0439 0.0814 0.6 Other_T L1
ENSG00000125703 ATG4C -24104 sc-eQTL 5.18e-03 0.196 0.0692 0.6 Other_T L1
ENSG00000142856 ITGB3BP -833693 sc-eQTL 2.59e-01 -0.0705 0.0623 0.6 Other_T L1
ENSG00000162607 USP1 323731 sc-eQTL 8.56e-01 -0.00985 0.0542 0.6 Other_T L1
ENSG00000203965 EFCAB7 -763344 sc-eQTL 2.91e-01 0.102 0.0962 0.6 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833383 sc-eQTL 7.91e-01 -0.0293 0.11 0.599 B_Activated L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.42e-01 -0.0646 0.106 0.599 B_Activated L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.79e-01 -0.00265 0.0985 0.599 B_Activated L2
ENSG00000125703 ATG4C -24104 sc-eQTL 6.11e-01 -0.0528 0.104 0.599 B_Activated L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 4.89e-02 -0.199 0.1 0.599 B_Activated L2
ENSG00000162607 USP1 323731 sc-eQTL 9.33e-01 0.00929 0.11 0.599 B_Activated L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 7.52e-01 0.0303 0.0958 0.599 B_Activated L2
ENSG00000079739 PGM1 -833383 sc-eQTL 5.65e-01 -0.0562 0.0975 0.601 B_Intermediate L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.72e-01 -0.0713 0.099 0.601 B_Intermediate L2
ENSG00000116641 DOCK7 71642 sc-eQTL 6.35e-01 0.045 0.0947 0.601 B_Intermediate L2
ENSG00000125703 ATG4C -24104 sc-eQTL 5.77e-01 -0.0448 0.0801 0.601 B_Intermediate L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.50e-01 -0.0181 0.0955 0.601 B_Intermediate L2
ENSG00000162607 USP1 323731 sc-eQTL 6.90e-01 0.0381 0.0953 0.601 B_Intermediate L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.47e-01 -0.137 0.0941 0.601 B_Intermediate L2
ENSG00000079739 PGM1 -833383 sc-eQTL 8.93e-01 -0.0128 0.0952 0.599 B_Memory L2
ENSG00000088035 ALG6 -607547 sc-eQTL 6.02e-01 -0.0506 0.0967 0.599 B_Memory L2
ENSG00000116641 DOCK7 71642 sc-eQTL 5.95e-01 0.0483 0.0907 0.599 B_Memory L2
ENSG00000125703 ATG4C -24104 sc-eQTL 9.78e-01 -0.00233 0.0863 0.599 B_Memory L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 9.59e-01 0.00503 0.0987 0.599 B_Memory L2
ENSG00000162607 USP1 323731 sc-eQTL 3.71e-01 0.0892 0.0994 0.599 B_Memory L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 6.85e-01 0.0398 0.098 0.599 B_Memory L2
ENSG00000079739 PGM1 -833383 sc-eQTL 8.45e-01 0.0188 0.0956 0.6 B_Naive1 L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.67e-01 0.0551 0.0959 0.6 B_Naive1 L2
ENSG00000116641 DOCK7 71642 sc-eQTL 1.93e-01 -0.12 0.0916 0.6 B_Naive1 L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.01e-02 0.145 0.0702 0.6 B_Naive1 L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.74e-01 -0.0836 0.0938 0.6 B_Naive1 L2
ENSG00000162607 USP1 323731 sc-eQTL 2.78e-01 -0.0896 0.0824 0.6 B_Naive1 L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.88e-01 -0.132 0.0999 0.6 B_Naive1 L2
ENSG00000079739 PGM1 -833383 sc-eQTL 3.44e-01 0.0898 0.0947 0.601 B_Naive2 L2
ENSG00000088035 ALG6 -607547 sc-eQTL 2.86e-01 -0.106 0.0987 0.601 B_Naive2 L2
ENSG00000116641 DOCK7 71642 sc-eQTL 7.46e-01 0.0309 0.0951 0.601 B_Naive2 L2
ENSG00000125703 ATG4C -24104 sc-eQTL 9.48e-01 -0.00602 0.0916 0.601 B_Naive2 L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.74e-01 -0.0157 0.0993 0.601 B_Naive2 L2
ENSG00000162607 USP1 323731 sc-eQTL 8.00e-01 0.024 0.0945 0.601 B_Naive2 L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 7.05e-01 -0.0374 0.0988 0.601 B_Naive2 L2
ENSG00000079739 PGM1 -833383 sc-eQTL 4.60e-02 -0.189 0.0942 0.593 CD4_CTL L2
ENSG00000088035 ALG6 -607547 sc-eQTL 8.59e-01 0.0179 0.101 0.593 CD4_CTL L2
ENSG00000116641 DOCK7 71642 sc-eQTL 1.15e-01 0.138 0.0874 0.593 CD4_CTL L2
ENSG00000125703 ATG4C -24104 sc-eQTL 7.53e-01 0.0287 0.091 0.593 CD4_CTL L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 2.91e-02 0.211 0.0962 0.593 CD4_CTL L2
ENSG00000162607 USP1 323731 sc-eQTL 9.18e-01 0.00958 0.0926 0.593 CD4_CTL L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 3.92e-01 -0.0793 0.0923 0.593 CD4_CTL L2
ENSG00000079739 PGM1 -833383 sc-eQTL 3.84e-01 0.0666 0.0764 0.6 CD4_Naive L2
ENSG00000088035 ALG6 -607547 sc-eQTL 7.55e-01 0.0259 0.0831 0.6 CD4_Naive L2
ENSG00000116641 DOCK7 71642 sc-eQTL 8.11e-01 -0.0195 0.0817 0.6 CD4_Naive L2
ENSG00000125703 ATG4C -24104 sc-eQTL 9.04e-01 0.00873 0.0722 0.6 CD4_Naive L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.36e-01 -0.0183 0.0882 0.6 CD4_Naive L2
ENSG00000162607 USP1 323731 sc-eQTL 4.41e-01 0.052 0.0673 0.6 CD4_Naive L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.54e-02 0.211 0.0864 0.6 CD4_Naive L2
ENSG00000079739 PGM1 -833383 sc-eQTL 8.04e-01 0.0198 0.0799 0.6 CD4_TCM L2
ENSG00000088035 ALG6 -607547 sc-eQTL 8.63e-02 -0.159 0.0922 0.6 CD4_TCM L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.25e-01 -0.00772 0.0822 0.6 CD4_TCM L2
ENSG00000125703 ATG4C -24104 sc-eQTL 5.70e-01 0.0455 0.08 0.6 CD4_TCM L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.92e-01 0.0808 0.0942 0.6 CD4_TCM L2
ENSG00000162607 USP1 323731 sc-eQTL 8.69e-01 -0.0128 0.0774 0.6 CD4_TCM L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 4.30e-01 0.0722 0.0912 0.6 CD4_TCM L2
ENSG00000079739 PGM1 -833383 sc-eQTL 7.08e-01 0.0352 0.094 0.6 CD4_TEM L2
ENSG00000088035 ALG6 -607547 sc-eQTL 2.76e-01 -0.103 0.0943 0.6 CD4_TEM L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.59e-01 0.00478 0.0922 0.6 CD4_TEM L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.61e-01 0.066 0.0894 0.6 CD4_TEM L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 6.90e-01 0.0368 0.0924 0.6 CD4_TEM L2
ENSG00000162607 USP1 323731 sc-eQTL 6.79e-01 0.0363 0.0875 0.6 CD4_TEM L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 2.27e-01 -0.116 0.0954 0.6 CD4_TEM L2
ENSG00000079739 PGM1 -833383 sc-eQTL 1.56e-01 0.122 0.0856 0.6 CD8_CTL L2
ENSG00000088035 ALG6 -607547 sc-eQTL 3.80e-01 -0.0803 0.0913 0.6 CD8_CTL L2
ENSG00000116641 DOCK7 71642 sc-eQTL 2.39e-01 0.102 0.0865 0.6 CD8_CTL L2
ENSG00000125703 ATG4C -24104 sc-eQTL 2.85e-02 0.201 0.0913 0.6 CD8_CTL L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 9.27e-01 -0.00886 0.096 0.6 CD8_CTL L2
ENSG00000162607 USP1 323731 sc-eQTL 7.87e-01 0.0233 0.086 0.6 CD8_CTL L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 3.28e-01 0.0963 0.0982 0.6 CD8_CTL L2
ENSG00000079739 PGM1 -833383 sc-eQTL 8.81e-01 0.0131 0.0876 0.6 CD8_Naive L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.63e-01 -0.0666 0.0906 0.6 CD8_Naive L2
ENSG00000116641 DOCK7 71642 sc-eQTL 3.19e-02 -0.2 0.0927 0.6 CD8_Naive L2
ENSG00000125703 ATG4C -24104 sc-eQTL 2.15e-01 0.111 0.0897 0.6 CD8_Naive L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 6.15e-01 0.0459 0.0911 0.6 CD8_Naive L2
ENSG00000162607 USP1 323731 sc-eQTL 9.12e-01 0.00852 0.077 0.6 CD8_Naive L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 5.59e-01 0.0502 0.0858 0.6 CD8_Naive L2
ENSG00000079739 PGM1 -833383 sc-eQTL 3.07e-03 -0.287 0.0956 0.597 CD8_TCM L2
ENSG00000088035 ALG6 -607547 sc-eQTL 1.54e-01 0.141 0.0985 0.597 CD8_TCM L2
ENSG00000116641 DOCK7 71642 sc-eQTL 7.85e-01 0.0264 0.0966 0.597 CD8_TCM L2
ENSG00000125703 ATG4C -24104 sc-eQTL 7.77e-01 -0.028 0.0988 0.597 CD8_TCM L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.17e-01 0.0961 0.0957 0.597 CD8_TCM L2
ENSG00000162607 USP1 323731 sc-eQTL 9.25e-01 0.00867 0.0924 0.597 CD8_TCM L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.01e-02 0.25 0.0962 0.597 CD8_TCM L2
ENSG00000079739 PGM1 -833383 sc-eQTL 5.18e-01 0.0651 0.1 0.605 CD8_TEM L2
ENSG00000088035 ALG6 -607547 sc-eQTL 6.34e-02 0.187 0.1 0.605 CD8_TEM L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.73e-01 0.00327 0.0979 0.605 CD8_TEM L2
ENSG00000125703 ATG4C -24104 sc-eQTL 6.72e-02 0.172 0.0933 0.605 CD8_TEM L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 5.20e-01 0.0655 0.102 0.605 CD8_TEM L2
ENSG00000162607 USP1 323731 sc-eQTL 3.25e-01 -0.0956 0.0969 0.605 CD8_TEM L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 9.74e-01 0.00316 0.0988 0.605 CD8_TEM L2
ENSG00000079739 PGM1 -833383 sc-eQTL 1.13e-01 -0.145 0.091 0.597 MAIT L2
ENSG00000088035 ALG6 -607547 sc-eQTL 8.82e-01 0.0135 0.0907 0.597 MAIT L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.44e-01 0.00607 0.0869 0.597 MAIT L2
ENSG00000125703 ATG4C -24104 sc-eQTL 3.07e-02 0.197 0.0906 0.597 MAIT L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.31e-01 -0.0196 0.0918 0.597 MAIT L2
ENSG00000162607 USP1 323731 sc-eQTL 3.83e-01 0.0794 0.0909 0.597 MAIT L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 2.62e-01 0.106 0.0942 0.597 MAIT L2
ENSG00000079739 PGM1 -833383 sc-eQTL 7.69e-01 -0.0275 0.0934 0.598 NK_CD56bright L2
ENSG00000088035 ALG6 -607547 sc-eQTL 8.21e-01 -0.0218 0.0958 0.598 NK_CD56bright L2
ENSG00000116641 DOCK7 71642 sc-eQTL 1.24e-01 -0.128 0.0825 0.598 NK_CD56bright L2
ENSG00000125703 ATG4C -24104 sc-eQTL 2.41e-01 -0.109 0.0924 0.598 NK_CD56bright L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 7.21e-01 -0.0345 0.0965 0.598 NK_CD56bright L2
ENSG00000162607 USP1 323731 sc-eQTL 4.48e-01 0.0756 0.0994 0.598 NK_CD56bright L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.27e-01 -0.145 0.0947 0.598 NK_CD56bright L2
ENSG00000079739 PGM1 -833383 sc-eQTL 2.84e-01 -0.0795 0.074 0.599 NK_CD56dim L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.39e-01 -0.0578 0.094 0.599 NK_CD56dim L2
ENSG00000116641 DOCK7 71642 sc-eQTL 1.35e-01 0.122 0.0814 0.599 NK_CD56dim L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.47e-01 -0.0633 0.083 0.599 NK_CD56dim L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.31e-01 -0.0203 0.0946 0.599 NK_CD56dim L2
ENSG00000162607 USP1 323731 sc-eQTL 8.19e-01 -0.021 0.0918 0.599 NK_CD56dim L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 9.69e-01 0.00397 0.102 0.599 NK_CD56dim L2
ENSG00000079739 PGM1 -833383 sc-eQTL 2.68e-01 0.11 0.0989 0.605 NK_HLA L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.90e-01 -0.0711 0.103 0.605 NK_HLA L2
ENSG00000116641 DOCK7 71642 sc-eQTL 4.86e-01 0.0548 0.0786 0.605 NK_HLA L2
ENSG00000125703 ATG4C -24104 sc-eQTL 1.70e-01 0.125 0.091 0.605 NK_HLA L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.62e-01 0.0167 0.096 0.605 NK_HLA L2
ENSG00000162607 USP1 323731 sc-eQTL 9.75e-01 0.00321 0.101 0.605 NK_HLA L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 3.78e-01 0.0806 0.0913 0.605 NK_HLA L2
ENSG00000079739 PGM1 -833383 sc-eQTL 2.33e-01 0.0956 0.0799 0.599 NK_cytokine L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.41e-02 0.174 0.0898 0.599 NK_cytokine L2
ENSG00000116641 DOCK7 71642 sc-eQTL 1.62e-01 0.117 0.0835 0.599 NK_cytokine L2
ENSG00000125703 ATG4C -24104 sc-eQTL 6.09e-01 0.0439 0.0858 0.599 NK_cytokine L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 8.40e-01 -0.018 0.0889 0.599 NK_cytokine L2
ENSG00000162607 USP1 323731 sc-eQTL 5.66e-01 -0.0537 0.0934 0.599 NK_cytokine L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 3.07e-01 0.0967 0.0945 0.599 NK_cytokine L2
ENSG00000079739 PGM1 -833383 sc-eQTL 8.47e-01 0.0207 0.107 0.604 PB L2
ENSG00000088035 ALG6 -607547 sc-eQTL 7.64e-01 -0.0337 0.112 0.604 PB L2
ENSG00000116641 DOCK7 71642 sc-eQTL 8.58e-01 -0.0215 0.12 0.604 PB L2
ENSG00000125703 ATG4C -24104 sc-eQTL 3.17e-01 0.105 0.104 0.604 PB L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 7.09e-01 -0.0389 0.104 0.604 PB L2
ENSG00000162607 USP1 323731 sc-eQTL 7.67e-01 0.0308 0.104 0.604 PB L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 6.06e-01 0.0592 0.114 0.604 PB L2
ENSG00000079739 PGM1 -833383 sc-eQTL 9.11e-01 0.00964 0.086 0.6 Pro_T L2
ENSG00000088035 ALG6 -607547 sc-eQTL 7.58e-01 0.0269 0.0875 0.6 Pro_T L2
ENSG00000116641 DOCK7 71642 sc-eQTL 2.81e-01 0.0947 0.0876 0.6 Pro_T L2
ENSG00000125703 ATG4C -24104 sc-eQTL 6.54e-01 0.0345 0.0769 0.6 Pro_T L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.12e-02 -0.165 0.0763 0.6 Pro_T L2
ENSG00000162607 USP1 323731 sc-eQTL 7.11e-01 0.0197 0.053 0.6 Pro_T L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 1.62e-01 0.125 0.0892 0.6 Pro_T L2
ENSG00000079739 PGM1 -833383 sc-eQTL 9.23e-01 -0.00885 0.091 0.6 Treg L2
ENSG00000088035 ALG6 -607547 sc-eQTL 9.83e-01 -0.00202 0.0973 0.6 Treg L2
ENSG00000116641 DOCK7 71642 sc-eQTL 5.08e-01 0.0592 0.0892 0.6 Treg L2
ENSG00000125703 ATG4C -24104 sc-eQTL 7.48e-01 0.0294 0.0913 0.6 Treg L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 1.97e-01 0.123 0.0951 0.6 Treg L2
ENSG00000162607 USP1 323731 sc-eQTL 6.55e-01 -0.0413 0.0923 0.6 Treg L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 9.84e-01 -0.00178 0.0914 0.6 Treg L2
ENSG00000079739 PGM1 -833383 sc-eQTL 4.92e-01 -0.0624 0.0906 0.595 cDC L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.56e-02 -0.175 0.0911 0.595 cDC L2
ENSG00000116641 DOCK7 71642 sc-eQTL 3.58e-01 0.083 0.0901 0.595 cDC L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.80e-01 -0.0554 0.0783 0.595 cDC L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 6.88e-01 0.04 0.0993 0.595 cDC L2
ENSG00000162607 USP1 323731 sc-eQTL 7.70e-01 0.0259 0.0884 0.595 cDC L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 9.56e-01 0.00445 0.0798 0.595 cDC L2
ENSG00000079739 PGM1 -833383 sc-eQTL 1.91e-01 0.111 0.0845 0.6 cMono_IL1B L2
ENSG00000088035 ALG6 -607547 sc-eQTL 8.08e-02 -0.148 0.0843 0.6 cMono_IL1B L2
ENSG00000116641 DOCK7 71642 sc-eQTL 4.56e-01 0.0668 0.0894 0.6 cMono_IL1B L2
ENSG00000125703 ATG4C -24104 sc-eQTL 3.87e-01 0.0544 0.0629 0.6 cMono_IL1B L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.98e-01 0.0755 0.0891 0.6 cMono_IL1B L2
ENSG00000162607 USP1 323731 sc-eQTL 8.65e-01 -0.0134 0.0787 0.6 cMono_IL1B L2
ENSG00000240563 L1TD1 565179 sc-eQTL 7.47e-01 -0.0255 0.079 0.6 cMono_IL1B L2
ENSG00000079739 PGM1 -833383 sc-eQTL 4.34e-01 0.0734 0.0937 0.6 cMono_S100A L2
ENSG00000088035 ALG6 -607547 sc-eQTL 1.57e-01 -0.134 0.0946 0.6 cMono_S100A L2
ENSG00000116641 DOCK7 71642 sc-eQTL 4.36e-01 0.0687 0.088 0.6 cMono_S100A L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.71e-01 0.055 0.0762 0.6 cMono_S100A L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 2.92e-01 0.0907 0.0859 0.6 cMono_S100A L2
ENSG00000162607 USP1 323731 sc-eQTL 5.61e-01 -0.0516 0.0885 0.6 cMono_S100A L2
ENSG00000240563 L1TD1 565179 sc-eQTL 5.96e-01 0.0391 0.0737 0.6 cMono_S100A L2
ENSG00000079739 PGM1 -833383 sc-eQTL 4.18e-01 -0.0869 0.107 0.597 gdT L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.71e-01 -0.0825 0.114 0.597 gdT L2
ENSG00000116641 DOCK7 71642 sc-eQTL 4.87e-01 0.078 0.112 0.597 gdT L2
ENSG00000125703 ATG4C -24104 sc-eQTL 4.06e-01 -0.0892 0.107 0.597 gdT L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.78e-01 -0.1 0.113 0.597 gdT L2
ENSG00000162607 USP1 323731 sc-eQTL 2.00e-01 -0.138 0.107 0.597 gdT L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 8.48e-01 -0.0214 0.112 0.597 gdT L2
ENSG00000079739 PGM1 -833383 sc-eQTL 5.66e-01 0.0536 0.0933 0.602 intMono L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.89e-01 0.0602 0.0868 0.602 intMono L2
ENSG00000116641 DOCK7 71642 sc-eQTL 2.90e-01 0.0939 0.0885 0.602 intMono L2
ENSG00000125703 ATG4C -24104 sc-eQTL 8.02e-01 -0.0213 0.0847 0.602 intMono L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 7.62e-01 0.0284 0.0934 0.602 intMono L2
ENSG00000162607 USP1 323731 sc-eQTL 4.77e-01 -0.0676 0.0948 0.602 intMono L2
ENSG00000240563 L1TD1 565179 sc-eQTL 3.16e-01 -0.0701 0.0697 0.602 intMono L2
ENSG00000079739 PGM1 -833383 sc-eQTL 9.69e-01 -0.00334 0.086 0.604 ncMono L2
ENSG00000088035 ALG6 -607547 sc-eQTL 4.03e-01 0.079 0.0943 0.604 ncMono L2
ENSG00000116641 DOCK7 71642 sc-eQTL 9.40e-01 -0.00697 0.093 0.604 ncMono L2
ENSG00000125703 ATG4C -24104 sc-eQTL 2.87e-01 0.0925 0.0866 0.604 ncMono L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 5.17e-01 0.0589 0.0908 0.604 ncMono L2
ENSG00000162607 USP1 323731 sc-eQTL 8.04e-01 -0.0231 0.0928 0.604 ncMono L2
ENSG00000240563 L1TD1 565179 sc-eQTL 3.19e-01 -0.0656 0.0657 0.604 ncMono L2
ENSG00000079739 PGM1 -833383 sc-eQTL 4.77e-01 -0.073 0.102 0.599 pDC L2
ENSG00000088035 ALG6 -607547 sc-eQTL 5.52e-02 0.191 0.0988 0.599 pDC L2
ENSG00000116641 DOCK7 71642 sc-eQTL 6.18e-01 -0.0509 0.102 0.599 pDC L2
ENSG00000125703 ATG4C -24104 sc-eQTL 5.16e-01 0.0595 0.0915 0.599 pDC L2
ENSG00000142856 ITGB3BP -833693 sc-eQTL 7.76e-02 -0.181 0.102 0.599 pDC L2
ENSG00000162607 USP1 323731 sc-eQTL 2.59e-01 0.118 0.104 0.599 pDC L2
ENSG00000203965 EFCAB7 -763344 sc-eQTL 7.32e-01 -0.0312 0.091 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -833383 sc-eQTL 6.32e-01 -0.0434 0.0904 0.6 B_Memory LOneK1K
ENSG00000088035 ALG6 -607547 sc-eQTL 2.25e-01 -0.121 0.0997 0.6 B_Memory LOneK1K
ENSG00000116641 DOCK7 71642 sc-eQTL 2.44e-01 0.101 0.0866 0.6 B_Memory LOneK1K
ENSG00000125703 ATG4C -24104 sc-eQTL 6.01e-01 -0.0368 0.0702 0.6 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -833693 sc-eQTL 3.76e-01 -0.0817 0.0921 0.6 B_Memory LOneK1K
ENSG00000162607 USP1 323731 sc-eQTL 2.41e-01 0.105 0.0893 0.6 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -763344 sc-eQTL 4.62e-01 -0.0707 0.096 0.6 B_Memory LOneK1K
ENSG00000079739 PGM1 -833383 sc-eQTL 5.55e-01 0.0548 0.0927 0.6 B_Naive LOneK1K
ENSG00000088035 ALG6 -607547 sc-eQTL 8.72e-01 0.0154 0.0956 0.6 B_Naive LOneK1K
ENSG00000116641 DOCK7 71642 sc-eQTL 5.13e-01 -0.0584 0.0891 0.6 B_Naive LOneK1K
ENSG00000125703 ATG4C -24104 sc-eQTL 3.75e-02 0.141 0.0674 0.6 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -833693 sc-eQTL 4.34e-01 -0.0754 0.0961 0.6 B_Naive LOneK1K
ENSG00000162607 USP1 323731 sc-eQTL 5.41e-01 -0.0506 0.0826 0.6 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -763344 sc-eQTL 2.51e-01 -0.111 0.0965 0.6 B_Naive LOneK1K
ENSG00000079739 PGM1 -833383 sc-eQTL 2.84e-01 0.0925 0.0862 0.6 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -607547 sc-eQTL 3.91e-02 -0.172 0.0829 0.6 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 71642 sc-eQTL 3.46e-01 0.0795 0.0841 0.6 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -24104 sc-eQTL 1.82e-01 0.0777 0.058 0.6 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -833693 sc-eQTL 2.24e-01 0.105 0.0859 0.6 CD14_Mono LOneK1K
ENSG00000162607 USP1 323731 sc-eQTL 4.93e-01 -0.0506 0.0736 0.6 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 565179 sc-eQTL 8.88e-01 0.0113 0.0798 0.6 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -833383 sc-eQTL 4.55e-01 0.0617 0.0824 0.601 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -607547 sc-eQTL 2.56e-01 0.106 0.0934 0.601 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 71642 sc-eQTL 5.28e-01 0.0585 0.0926 0.601 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -24104 sc-eQTL 7.62e-01 0.024 0.079 0.601 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -833693 sc-eQTL 4.56e-01 0.0685 0.0916 0.601 CD16_Mono LOneK1K
ENSG00000162607 USP1 323731 sc-eQTL 4.24e-01 -0.069 0.0861 0.601 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 565179 sc-eQTL 5.73e-02 -0.111 0.0583 0.601 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -833383 sc-eQTL 5.47e-01 0.0437 0.0724 0.599 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -607547 sc-eQTL 8.46e-01 0.0169 0.0871 0.599 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 71642 sc-eQTL 2.07e-02 0.18 0.077 0.599 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -24104 sc-eQTL 8.56e-01 -0.0141 0.0779 0.599 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -833693 sc-eQTL 9.51e-01 0.00567 0.0923 0.599 NK_CD56dim LOneK1K
ENSG00000162607 USP1 323731 sc-eQTL 3.50e-01 -0.0783 0.0836 0.599 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -763344 sc-eQTL 5.42e-01 0.0621 0.102 0.599 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 71660 eQTL 3.27e-12 0.157 0.0222 0.0 0.0 0.371
ENSG00000125703 ATG4C -24104 eQTL 2.44e-05 0.0728 0.0172 0.00359 0.0036 0.371
ENSG00000132855 ANGPTL3 162541 pQTL 0.000233 0.111 0.0302 0.0 0.0 0.38
ENSG00000142856 ITGB3BP -833693 eQTL 0.00299 -0.0895 0.0301 0.0 0.0 0.371
ENSG00000162607 USP1 323731 eQTL 0.000249 0.0484 0.0132 0.0 0.0 0.371

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 71660 6.87e-06 7.73e-06 6.33e-07 3.83e-06 1.61e-06 2.56e-06 8.6e-06 1.26e-06 4.65e-06 3.1e-06 8.01e-06 2.98e-06 1.02e-05 3.18e-06 9.83e-07 4.58e-06 3.02e-06 3.77e-06 1.63e-06 1.51e-06 2.77e-06 6.55e-06 5.31e-06 1.92e-06 9.75e-06 2.31e-06 2.87e-06 1.8e-06 6.69e-06 7.44e-06 3.29e-06 4.18e-07 7.36e-07 2.54e-06 2.22e-06 1.59e-06 1e-06 4.82e-07 9.69e-07 6.18e-07 6.93e-07 8.16e-06 8.49e-07 1.85e-07 7.89e-07 9.92e-07 1.02e-06 6.72e-07 4.53e-07
ENSG00000125703 ATG4C -24104 1.45e-05 1.56e-05 2.86e-06 9.47e-06 2.75e-06 6.96e-06 2.06e-05 2.62e-06 1.42e-05 7.13e-06 1.86e-05 7.55e-06 2.62e-05 6.43e-06 4.55e-06 9.16e-06 8.14e-06 1.26e-05 4.28e-06 4.22e-06 7.59e-06 1.4e-05 1.54e-05 4.85e-06 2.52e-05 5.01e-06 7.52e-06 6.34e-06 1.62e-05 1.67e-05 1e-05 1.05e-06 1.4e-06 4.4e-06 6.48e-06 3.83e-06 1.81e-06 2.41e-06 2.73e-06 1.97e-06 1.29e-06 1.97e-05 2.47e-06 1.97e-07 1.29e-06 2.45e-06 2.5e-06 8.61e-07 6.66e-07
ENSG00000142856 ITGB3BP -833693 2.74e-07 1.3e-07 3.71e-08 1.86e-07 8.83e-08 1e-07 1.49e-07 5.19e-08 1.44e-07 4.74e-08 1.6e-07 8.14e-08 1.41e-07 6.56e-08 6e-08 7.37e-08 3.94e-08 1.21e-07 5.36e-08 4.07e-08 1.04e-07 1.23e-07 1.39e-07 3.79e-08 1.4e-07 1.16e-07 1.08e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 4.1e-08 3.09e-08 8.68e-08 7.66e-08 3.93e-08 5.01e-08 9.65e-08 7.23e-08 3.18e-08 4.57e-08 1.35e-07 4.14e-08 2.48e-08 5.87e-08 1.83e-08 1.22e-07 4.09e-09 4.79e-08
ENSG00000162607 USP1 323731 1.25e-06 8.9e-07 1.46e-07 3.2e-07 1.12e-07 3.2e-07 7.25e-07 1.76e-07 7.15e-07 3.22e-07 1.08e-06 5.08e-07 1.21e-06 2.14e-07 3.13e-07 4.19e-07 5.56e-07 5.02e-07 2.88e-07 1.91e-07 2.42e-07 5.34e-07 5.67e-07 2.89e-07 1.54e-06 2.64e-07 4.55e-07 3.9e-07 6.84e-07 8.5e-07 4.26e-07 7.12e-08 5.31e-08 2.06e-07 3.29e-07 1.71e-07 1.31e-07 1.06e-07 7.63e-08 2.15e-08 9.7e-08 1.09e-06 5.09e-08 1.53e-08 1.58e-07 3.46e-08 1.49e-07 1.2e-08 5.43e-08