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Genes within 1Mb (chr1:62733681:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -859730 sc-eQTL 3.55e-01 0.0821 0.0886 0.761 B L1
ENSG00000088035 ALG6 -633894 sc-eQTL 5.77e-01 -0.0513 0.0919 0.761 B L1
ENSG00000116641 DOCK7 45295 sc-eQTL 3.34e-01 0.0889 0.0918 0.761 B L1
ENSG00000125703 ATG4C -50451 sc-eQTL 5.30e-01 -0.0402 0.0639 0.761 B L1
ENSG00000132849 PATJ 991275 sc-eQTL 2.73e-01 -0.085 0.0774 0.761 B L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.30e-01 -0.049 0.102 0.761 B L1
ENSG00000162607 USP1 297384 sc-eQTL 6.11e-01 0.0449 0.0883 0.761 B L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 7.64e-01 0.0313 0.104 0.761 B L1
ENSG00000079739 PGM1 -859730 sc-eQTL 7.78e-01 0.0212 0.075 0.761 CD4T L1
ENSG00000088035 ALG6 -633894 sc-eQTL 9.16e-01 0.00874 0.0828 0.761 CD4T L1
ENSG00000116641 DOCK7 45295 sc-eQTL 1.00e+00 4.18e-05 0.0838 0.761 CD4T L1
ENSG00000125703 ATG4C -50451 sc-eQTL 5.70e-01 0.0385 0.0676 0.761 CD4T L1
ENSG00000132849 PATJ 991275 sc-eQTL 2.20e-01 0.0673 0.0547 0.761 CD4T L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.71e-01 0.0156 0.096 0.761 CD4T L1
ENSG00000162607 USP1 297384 sc-eQTL 4.36e-01 0.0512 0.0655 0.761 CD4T L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.47e-01 0.00577 0.0862 0.761 CD4T L1
ENSG00000079739 PGM1 -859730 sc-eQTL 6.89e-01 -0.0337 0.0842 0.761 CD8T L1
ENSG00000088035 ALG6 -633894 sc-eQTL 7.25e-01 -0.0327 0.0928 0.761 CD8T L1
ENSG00000116641 DOCK7 45295 sc-eQTL 3.22e-01 0.0931 0.0938 0.761 CD8T L1
ENSG00000125703 ATG4C -50451 sc-eQTL 1.40e-02 0.218 0.088 0.761 CD8T L1
ENSG00000132849 PATJ 991275 sc-eQTL 5.46e-01 0.0329 0.0544 0.761 CD8T L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 7.61e-01 0.0304 0.0999 0.761 CD8T L1
ENSG00000162607 USP1 297384 sc-eQTL 9.26e-01 -0.00727 0.0778 0.761 CD8T L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 4.73e-01 0.0715 0.0994 0.761 CD8T L1
ENSG00000079739 PGM1 -859730 sc-eQTL 1.02e-01 -0.151 0.092 0.761 DC L1
ENSG00000088035 ALG6 -633894 sc-eQTL 8.80e-01 0.0145 0.0955 0.761 DC L1
ENSG00000116641 DOCK7 45295 sc-eQTL 2.92e-01 -0.103 0.0977 0.761 DC L1
ENSG00000125703 ATG4C -50451 sc-eQTL 3.95e-01 0.0652 0.0765 0.761 DC L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 4.55e-01 0.0801 0.107 0.761 DC L1
ENSG00000162607 USP1 297384 sc-eQTL 1.54e-01 0.133 0.093 0.761 DC L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.75e-01 0.00292 0.0932 0.761 DC L1
ENSG00000079739 PGM1 -859730 sc-eQTL 6.67e-01 -0.039 0.0905 0.761 Mono L1
ENSG00000088035 ALG6 -633894 sc-eQTL 1.60e-02 -0.226 0.0932 0.761 Mono L1
ENSG00000116641 DOCK7 45295 sc-eQTL 1.22e-01 0.141 0.0908 0.761 Mono L1
ENSG00000125703 ATG4C -50451 sc-eQTL 3.10e-01 0.0627 0.0616 0.761 Mono L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 7.17e-01 -0.0354 0.0975 0.761 Mono L1
ENSG00000162607 USP1 297384 sc-eQTL 9.92e-01 0.000849 0.0801 0.761 Mono L1
ENSG00000240563 L1TD1 538832 sc-eQTL 2.29e-01 -0.0899 0.0745 0.761 Mono L1
ENSG00000079739 PGM1 -859730 sc-eQTL 8.18e-01 0.0177 0.0768 0.762 NK L1
ENSG00000088035 ALG6 -633894 sc-eQTL 5.94e-01 0.0481 0.09 0.762 NK L1
ENSG00000116641 DOCK7 45295 sc-eQTL 1.76e-01 0.1 0.0739 0.762 NK L1
ENSG00000125703 ATG4C -50451 sc-eQTL 3.08e-01 0.0813 0.0795 0.762 NK L1
ENSG00000132849 PATJ 991275 sc-eQTL 2.53e-01 -0.0892 0.0779 0.762 NK L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.49e-01 0.00634 0.0991 0.762 NK L1
ENSG00000162607 USP1 297384 sc-eQTL 7.08e-01 0.0332 0.0885 0.762 NK L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 6.44e-01 0.0497 0.108 0.762 NK L1
ENSG00000079739 PGM1 -859730 sc-eQTL 7.42e-01 -0.0291 0.0882 0.761 Other_T L1
ENSG00000088035 ALG6 -633894 sc-eQTL 1.77e-01 0.12 0.0883 0.761 Other_T L1
ENSG00000116641 DOCK7 45295 sc-eQTL 8.03e-01 0.0225 0.0905 0.761 Other_T L1
ENSG00000125703 ATG4C -50451 sc-eQTL 1.54e-01 0.111 0.078 0.761 Other_T L1
ENSG00000132849 PATJ 991275 sc-eQTL 2.77e-01 0.0793 0.0728 0.761 Other_T L1
ENSG00000142856 ITGB3BP -860040 sc-eQTL 5.59e-01 -0.0406 0.0694 0.761 Other_T L1
ENSG00000162607 USP1 297384 sc-eQTL 8.44e-01 0.0118 0.0602 0.761 Other_T L1
ENSG00000203965 EFCAB7 -789691 sc-eQTL 5.10e-01 0.0707 0.107 0.761 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -859730 sc-eQTL 3.60e-01 -0.111 0.121 0.765 B_Activated L2
ENSG00000088035 ALG6 -633894 sc-eQTL 9.97e-01 -0.000435 0.116 0.765 B_Activated L2
ENSG00000116641 DOCK7 45295 sc-eQTL 8.29e-01 0.0234 0.108 0.765 B_Activated L2
ENSG00000125703 ATG4C -50451 sc-eQTL 7.65e-01 0.034 0.113 0.765 B_Activated L2
ENSG00000132849 PATJ 991275 sc-eQTL 1.12e-01 0.153 0.0958 0.765 B_Activated L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 4.30e-01 -0.0876 0.111 0.765 B_Activated L2
ENSG00000162607 USP1 297384 sc-eQTL 4.08e-01 0.0994 0.12 0.765 B_Activated L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 7.28e-01 0.0366 0.105 0.765 B_Activated L2
ENSG00000079739 PGM1 -859730 sc-eQTL 5.97e-01 0.0563 0.106 0.76 B_Intermediate L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.68e-01 -0.148 0.107 0.76 B_Intermediate L2
ENSG00000116641 DOCK7 45295 sc-eQTL 6.83e-01 -0.0422 0.103 0.76 B_Intermediate L2
ENSG00000125703 ATG4C -50451 sc-eQTL 8.68e-01 0.0146 0.0872 0.76 B_Intermediate L2
ENSG00000132849 PATJ 991275 sc-eQTL 6.94e-01 0.0373 0.0944 0.76 B_Intermediate L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.01e-01 -0.0262 0.104 0.76 B_Intermediate L2
ENSG00000162607 USP1 297384 sc-eQTL 1.07e-01 0.167 0.103 0.76 B_Intermediate L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 2.53e-01 -0.117 0.103 0.76 B_Intermediate L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.42e-01 -0.00746 0.103 0.761 B_Memory L2
ENSG00000088035 ALG6 -633894 sc-eQTL 5.28e-01 0.0663 0.105 0.761 B_Memory L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.69e-01 0.109 0.0982 0.761 B_Memory L2
ENSG00000125703 ATG4C -50451 sc-eQTL 5.88e-01 0.0508 0.0935 0.761 B_Memory L2
ENSG00000132849 PATJ 991275 sc-eQTL 2.34e-02 -0.211 0.0923 0.761 B_Memory L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 3.41e-01 -0.102 0.107 0.761 B_Memory L2
ENSG00000162607 USP1 297384 sc-eQTL 1.78e-01 0.146 0.108 0.761 B_Memory L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 4.13e-01 0.0871 0.106 0.761 B_Memory L2
ENSG00000079739 PGM1 -859730 sc-eQTL 6.67e-01 0.0453 0.105 0.761 B_Naive1 L2
ENSG00000088035 ALG6 -633894 sc-eQTL 5.29e-01 -0.0665 0.105 0.761 B_Naive1 L2
ENSG00000116641 DOCK7 45295 sc-eQTL 7.50e-01 0.0323 0.101 0.761 B_Naive1 L2
ENSG00000125703 ATG4C -50451 sc-eQTL 8.79e-01 0.0118 0.0778 0.761 B_Naive1 L2
ENSG00000132849 PATJ 991275 sc-eQTL 8.42e-01 -0.02 0.1 0.761 B_Naive1 L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 7.79e-01 -0.029 0.103 0.761 B_Naive1 L2
ENSG00000162607 USP1 297384 sc-eQTL 5.48e-01 -0.0546 0.0907 0.761 B_Naive1 L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 8.02e-01 0.0277 0.11 0.761 B_Naive1 L2
ENSG00000079739 PGM1 -859730 sc-eQTL 8.15e-01 0.0243 0.104 0.762 B_Naive2 L2
ENSG00000088035 ALG6 -633894 sc-eQTL 3.45e-01 -0.102 0.108 0.762 B_Naive2 L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.63e-01 0.0603 0.104 0.762 B_Naive2 L2
ENSG00000125703 ATG4C -50451 sc-eQTL 3.01e-02 -0.216 0.0991 0.762 B_Naive2 L2
ENSG00000132849 PATJ 991275 sc-eQTL 7.48e-01 -0.0329 0.103 0.762 B_Naive2 L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.29e-01 -0.0525 0.109 0.762 B_Naive2 L2
ENSG00000162607 USP1 297384 sc-eQTL 5.34e-01 -0.0643 0.103 0.762 B_Naive2 L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 6.15e-01 0.0545 0.108 0.762 B_Naive2 L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.04e-04 -0.341 0.101 0.755 CD4_CTL L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.27e-01 -0.168 0.109 0.755 CD4_CTL L2
ENSG00000116641 DOCK7 45295 sc-eQTL 3.40e-02 0.203 0.0951 0.755 CD4_CTL L2
ENSG00000125703 ATG4C -50451 sc-eQTL 2.81e-01 0.107 0.0993 0.755 CD4_CTL L2
ENSG00000132849 PATJ 991275 sc-eQTL 1.29e-01 -0.121 0.0793 0.755 CD4_CTL L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 1.32e-01 0.16 0.106 0.755 CD4_CTL L2
ENSG00000162607 USP1 297384 sc-eQTL 7.80e-01 0.0283 0.101 0.755 CD4_CTL L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 3.57e-01 -0.0933 0.101 0.755 CD4_CTL L2
ENSG00000079739 PGM1 -859730 sc-eQTL 7.94e-01 0.022 0.0842 0.761 CD4_Naive L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.26e-01 0.14 0.091 0.761 CD4_Naive L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.46e-01 -0.104 0.0896 0.761 CD4_Naive L2
ENSG00000125703 ATG4C -50451 sc-eQTL 4.38e-01 0.0616 0.0794 0.761 CD4_Naive L2
ENSG00000132849 PATJ 991275 sc-eQTL 3.56e-01 0.0515 0.0557 0.761 CD4_Naive L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.41e-01 -0.0453 0.0971 0.761 CD4_Naive L2
ENSG00000162607 USP1 297384 sc-eQTL 5.77e-01 0.0414 0.0741 0.761 CD4_Naive L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.66e-01 -0.00411 0.0964 0.761 CD4_Naive L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.02e-01 0.0108 0.0874 0.761 CD4_TCM L2
ENSG00000088035 ALG6 -633894 sc-eQTL 8.68e-02 -0.174 0.101 0.761 CD4_TCM L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.69e-01 0.0512 0.0899 0.761 CD4_TCM L2
ENSG00000125703 ATG4C -50451 sc-eQTL 8.68e-01 0.0146 0.0876 0.761 CD4_TCM L2
ENSG00000132849 PATJ 991275 sc-eQTL 2.64e-01 0.0786 0.0701 0.761 CD4_TCM L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 3.97e-01 0.0875 0.103 0.761 CD4_TCM L2
ENSG00000162607 USP1 297384 sc-eQTL 7.83e-01 0.0233 0.0847 0.761 CD4_TCM L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 5.43e-01 0.0608 0.0999 0.761 CD4_TCM L2
ENSG00000079739 PGM1 -859730 sc-eQTL 4.27e-01 0.0827 0.104 0.761 CD4_TEM L2
ENSG00000088035 ALG6 -633894 sc-eQTL 5.29e-01 -0.066 0.105 0.761 CD4_TEM L2
ENSG00000116641 DOCK7 45295 sc-eQTL 9.65e-01 0.00445 0.102 0.761 CD4_TEM L2
ENSG00000125703 ATG4C -50451 sc-eQTL 2.34e-01 -0.118 0.0988 0.761 CD4_TEM L2
ENSG00000132849 PATJ 991275 sc-eQTL 7.31e-01 0.0318 0.0924 0.761 CD4_TEM L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.57e-01 0.0185 0.102 0.761 CD4_TEM L2
ENSG00000162607 USP1 297384 sc-eQTL 7.81e-02 0.17 0.0962 0.761 CD4_TEM L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 7.68e-01 -0.0313 0.106 0.761 CD4_TEM L2
ENSG00000079739 PGM1 -859730 sc-eQTL 7.46e-01 -0.0309 0.0953 0.761 CD8_CTL L2
ENSG00000088035 ALG6 -633894 sc-eQTL 9.88e-01 -0.00148 0.101 0.761 CD8_CTL L2
ENSG00000116641 DOCK7 45295 sc-eQTL 1.97e-01 0.124 0.0958 0.761 CD8_CTL L2
ENSG00000125703 ATG4C -50451 sc-eQTL 6.84e-04 0.343 0.0996 0.761 CD8_CTL L2
ENSG00000132849 PATJ 991275 sc-eQTL 7.92e-01 0.0256 0.097 0.761 CD8_CTL L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.51e-01 -0.02 0.106 0.761 CD8_CTL L2
ENSG00000162607 USP1 297384 sc-eQTL 9.52e-01 -0.00575 0.0954 0.761 CD8_CTL L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 5.73e-01 0.0616 0.109 0.761 CD8_CTL L2
ENSG00000079739 PGM1 -859730 sc-eQTL 7.92e-01 0.0255 0.0966 0.761 CD8_Naive L2
ENSG00000088035 ALG6 -633894 sc-eQTL 7.38e-01 -0.0335 0.1 0.761 CD8_Naive L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.56e-02 -0.197 0.102 0.761 CD8_Naive L2
ENSG00000125703 ATG4C -50451 sc-eQTL 1.28e-01 0.151 0.0987 0.761 CD8_Naive L2
ENSG00000132849 PATJ 991275 sc-eQTL 5.12e-01 0.0498 0.0758 0.761 CD8_Naive L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.71e-01 -0.00371 0.1 0.761 CD8_Naive L2
ENSG00000162607 USP1 297384 sc-eQTL 9.86e-01 0.00153 0.085 0.761 CD8_Naive L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 3.76e-01 0.0839 0.0946 0.761 CD8_Naive L2
ENSG00000079739 PGM1 -859730 sc-eQTL 1.98e-01 -0.14 0.109 0.757 CD8_TCM L2
ENSG00000088035 ALG6 -633894 sc-eQTL 7.05e-01 0.0419 0.111 0.757 CD8_TCM L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.51e-01 0.0644 0.108 0.757 CD8_TCM L2
ENSG00000125703 ATG4C -50451 sc-eQTL 5.64e-01 -0.0638 0.11 0.757 CD8_TCM L2
ENSG00000132849 PATJ 991275 sc-eQTL 5.07e-01 -0.0674 0.101 0.757 CD8_TCM L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.51e-01 -0.0202 0.107 0.757 CD8_TCM L2
ENSG00000162607 USP1 297384 sc-eQTL 2.15e-01 0.128 0.103 0.757 CD8_TCM L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 8.51e-01 0.0205 0.109 0.757 CD8_TCM L2
ENSG00000079739 PGM1 -859730 sc-eQTL 5.89e-01 0.0611 0.113 0.767 CD8_TEM L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.08e-01 0.182 0.113 0.767 CD8_TEM L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.78e-01 -0.0612 0.11 0.767 CD8_TEM L2
ENSG00000125703 ATG4C -50451 sc-eQTL 2.59e-01 0.119 0.105 0.767 CD8_TEM L2
ENSG00000132849 PATJ 991275 sc-eQTL 9.32e-01 0.00913 0.107 0.767 CD8_TEM L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 1.04e-01 0.185 0.114 0.767 CD8_TEM L2
ENSG00000162607 USP1 297384 sc-eQTL 3.23e-01 -0.108 0.109 0.767 CD8_TEM L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.69e-01 0.00434 0.111 0.767 CD8_TEM L2
ENSG00000079739 PGM1 -859730 sc-eQTL 4.61e-02 -0.202 0.101 0.76 MAIT L2
ENSG00000088035 ALG6 -633894 sc-eQTL 4.70e-01 0.0729 0.101 0.76 MAIT L2
ENSG00000116641 DOCK7 45295 sc-eQTL 8.01e-01 0.0243 0.0965 0.76 MAIT L2
ENSG00000125703 ATG4C -50451 sc-eQTL 8.20e-02 0.177 0.101 0.76 MAIT L2
ENSG00000132849 PATJ 991275 sc-eQTL 2.55e-01 0.098 0.0858 0.76 MAIT L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.07e-01 -0.0525 0.102 0.76 MAIT L2
ENSG00000162607 USP1 297384 sc-eQTL 3.24e-01 0.0997 0.101 0.76 MAIT L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 3.37e-01 0.101 0.105 0.76 MAIT L2
ENSG00000079739 PGM1 -859730 sc-eQTL 3.14e-01 -0.103 0.102 0.758 NK_CD56bright L2
ENSG00000088035 ALG6 -633894 sc-eQTL 4.35e-01 -0.082 0.105 0.758 NK_CD56bright L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.94e-01 -0.0954 0.0907 0.758 NK_CD56bright L2
ENSG00000125703 ATG4C -50451 sc-eQTL 9.85e-01 -0.00185 0.102 0.758 NK_CD56bright L2
ENSG00000132849 PATJ 991275 sc-eQTL 2.11e-01 -0.125 0.0992 0.758 NK_CD56bright L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 7.56e-01 -0.0329 0.106 0.758 NK_CD56bright L2
ENSG00000162607 USP1 297384 sc-eQTL 5.78e-01 0.0607 0.109 0.758 NK_CD56bright L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 3.78e-01 -0.092 0.104 0.758 NK_CD56bright L2
ENSG00000079739 PGM1 -859730 sc-eQTL 3.63e-01 -0.0727 0.0797 0.761 NK_CD56dim L2
ENSG00000088035 ALG6 -633894 sc-eQTL 5.91e-01 0.0545 0.101 0.761 NK_CD56dim L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.37e-01 0.104 0.0879 0.761 NK_CD56dim L2
ENSG00000125703 ATG4C -50451 sc-eQTL 9.29e-01 0.00795 0.0896 0.761 NK_CD56dim L2
ENSG00000132849 PATJ 991275 sc-eQTL 1.92e-02 -0.226 0.0959 0.761 NK_CD56dim L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.94e-01 0.000713 0.102 0.761 NK_CD56dim L2
ENSG00000162607 USP1 297384 sc-eQTL 1.74e-01 0.134 0.0984 0.761 NK_CD56dim L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 5.34e-01 0.0686 0.11 0.761 NK_CD56dim L2
ENSG00000079739 PGM1 -859730 sc-eQTL 1.18e-01 0.168 0.107 0.753 NK_HLA L2
ENSG00000088035 ALG6 -633894 sc-eQTL 9.69e-01 -0.00441 0.112 0.753 NK_HLA L2
ENSG00000116641 DOCK7 45295 sc-eQTL 3.19e-01 0.0852 0.0853 0.753 NK_HLA L2
ENSG00000125703 ATG4C -50451 sc-eQTL 3.42e-01 0.0945 0.0992 0.753 NK_HLA L2
ENSG00000132849 PATJ 991275 sc-eQTL 4.67e-01 -0.0672 0.0922 0.753 NK_HLA L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 5.50e-01 -0.0625 0.104 0.753 NK_HLA L2
ENSG00000162607 USP1 297384 sc-eQTL 5.47e-01 0.0658 0.109 0.753 NK_HLA L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 4.24e-01 0.0795 0.0993 0.753 NK_HLA L2
ENSG00000079739 PGM1 -859730 sc-eQTL 7.16e-01 0.0319 0.0876 0.761 NK_cytokine L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.10e-01 0.158 0.0985 0.761 NK_cytokine L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.16e-02 0.21 0.0906 0.761 NK_cytokine L2
ENSG00000125703 ATG4C -50451 sc-eQTL 3.02e-01 0.0969 0.0936 0.761 NK_cytokine L2
ENSG00000132849 PATJ 991275 sc-eQTL 1.42e-01 0.145 0.0985 0.761 NK_cytokine L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.14e-01 -0.0491 0.0972 0.761 NK_cytokine L2
ENSG00000162607 USP1 297384 sc-eQTL 1.71e-01 -0.14 0.102 0.761 NK_cytokine L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 2.31e-01 0.124 0.103 0.761 NK_cytokine L2
ENSG00000079739 PGM1 -859730 sc-eQTL 8.18e-01 -0.0283 0.123 0.752 PB L2
ENSG00000088035 ALG6 -633894 sc-eQTL 7.82e-01 0.0359 0.129 0.752 PB L2
ENSG00000116641 DOCK7 45295 sc-eQTL 9.98e-01 0.000397 0.138 0.752 PB L2
ENSG00000125703 ATG4C -50451 sc-eQTL 5.76e-01 -0.0675 0.12 0.752 PB L2
ENSG00000132849 PATJ 991275 sc-eQTL 5.84e-01 -0.0685 0.125 0.752 PB L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 5.86e-01 0.0655 0.12 0.752 PB L2
ENSG00000162607 USP1 297384 sc-eQTL 3.64e-01 0.109 0.119 0.752 PB L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 7.64e-01 0.0397 0.132 0.752 PB L2
ENSG00000079739 PGM1 -859730 sc-eQTL 6.34e-01 0.0457 0.0957 0.761 Pro_T L2
ENSG00000088035 ALG6 -633894 sc-eQTL 6.40e-01 0.0456 0.0974 0.761 Pro_T L2
ENSG00000116641 DOCK7 45295 sc-eQTL 6.20e-02 0.182 0.097 0.761 Pro_T L2
ENSG00000125703 ATG4C -50451 sc-eQTL 7.67e-01 0.0254 0.0856 0.761 Pro_T L2
ENSG00000132849 PATJ 991275 sc-eQTL 8.05e-01 0.0231 0.0934 0.761 Pro_T L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 2.54e-01 -0.0979 0.0856 0.761 Pro_T L2
ENSG00000162607 USP1 297384 sc-eQTL 2.01e-01 0.0755 0.0588 0.761 Pro_T L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 7.22e-01 0.0355 0.0997 0.761 Pro_T L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.43e-01 -0.00714 0.1 0.761 Treg L2
ENSG00000088035 ALG6 -633894 sc-eQTL 4.61e-01 0.0792 0.107 0.761 Treg L2
ENSG00000116641 DOCK7 45295 sc-eQTL 7.87e-01 0.0267 0.0986 0.761 Treg L2
ENSG00000125703 ATG4C -50451 sc-eQTL 6.12e-01 0.0511 0.101 0.761 Treg L2
ENSG00000132849 PATJ 991275 sc-eQTL 5.71e-01 -0.053 0.0933 0.761 Treg L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.86e-01 0.0427 0.105 0.761 Treg L2
ENSG00000162607 USP1 297384 sc-eQTL 6.08e-01 -0.0523 0.102 0.761 Treg L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.23e-01 0.00978 0.101 0.761 Treg L2
ENSG00000079739 PGM1 -859730 sc-eQTL 5.00e-01 -0.0685 0.101 0.759 cDC L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.60e-01 -0.144 0.102 0.759 cDC L2
ENSG00000116641 DOCK7 45295 sc-eQTL 9.62e-01 0.00486 0.101 0.759 cDC L2
ENSG00000125703 ATG4C -50451 sc-eQTL 4.29e-01 0.0693 0.0875 0.759 cDC L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 5.25e-01 0.0707 0.111 0.759 cDC L2
ENSG00000162607 USP1 297384 sc-eQTL 8.18e-01 0.0228 0.0988 0.759 cDC L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 9.96e-01 -0.00049 0.0892 0.759 cDC L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.30e-01 -0.00821 0.0939 0.761 cMono_IL1B L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.45e-01 -0.137 0.0936 0.761 cMono_IL1B L2
ENSG00000116641 DOCK7 45295 sc-eQTL 8.35e-02 0.171 0.0984 0.761 cMono_IL1B L2
ENSG00000125703 ATG4C -50451 sc-eQTL 4.13e-01 0.0571 0.0696 0.761 cMono_IL1B L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.46e-01 -0.00665 0.0988 0.761 cMono_IL1B L2
ENSG00000162607 USP1 297384 sc-eQTL 7.93e-01 0.0229 0.0871 0.761 cMono_IL1B L2
ENSG00000240563 L1TD1 538832 sc-eQTL 3.21e-01 -0.0869 0.0873 0.761 cMono_IL1B L2
ENSG00000079739 PGM1 -859730 sc-eQTL 5.06e-01 -0.0695 0.104 0.761 cMono_S100A L2
ENSG00000088035 ALG6 -633894 sc-eQTL 3.99e-03 -0.302 0.104 0.761 cMono_S100A L2
ENSG00000116641 DOCK7 45295 sc-eQTL 6.87e-01 0.0395 0.0982 0.761 cMono_S100A L2
ENSG00000125703 ATG4C -50451 sc-eQTL 9.42e-01 0.00617 0.085 0.761 cMono_S100A L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 5.81e-01 -0.0529 0.0958 0.761 cMono_S100A L2
ENSG00000162607 USP1 297384 sc-eQTL 3.93e-01 -0.0843 0.0985 0.761 cMono_S100A L2
ENSG00000240563 L1TD1 538832 sc-eQTL 5.68e-01 0.0469 0.0821 0.761 cMono_S100A L2
ENSG00000079739 PGM1 -859730 sc-eQTL 3.09e-01 0.121 0.118 0.748 gdT L2
ENSG00000088035 ALG6 -633894 sc-eQTL 3.90e-01 -0.109 0.126 0.748 gdT L2
ENSG00000116641 DOCK7 45295 sc-eQTL 5.18e-01 -0.0803 0.124 0.748 gdT L2
ENSG00000125703 ATG4C -50451 sc-eQTL 2.19e-01 -0.146 0.118 0.748 gdT L2
ENSG00000132849 PATJ 991275 sc-eQTL 6.51e-01 0.0524 0.116 0.748 gdT L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.34e-01 -0.0105 0.126 0.748 gdT L2
ENSG00000162607 USP1 297384 sc-eQTL 2.94e-01 -0.125 0.119 0.748 gdT L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 6.03e-01 -0.0645 0.124 0.748 gdT L2
ENSG00000079739 PGM1 -859730 sc-eQTL 1.92e-01 0.137 0.104 0.762 intMono L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.97e-01 0.126 0.0972 0.762 intMono L2
ENSG00000116641 DOCK7 45295 sc-eQTL 8.36e-01 -0.0207 0.0997 0.762 intMono L2
ENSG00000125703 ATG4C -50451 sc-eQTL 8.12e-02 0.166 0.0945 0.762 intMono L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.86e-01 -0.015 0.105 0.762 intMono L2
ENSG00000162607 USP1 297384 sc-eQTL 3.70e-01 -0.0957 0.106 0.762 intMono L2
ENSG00000240563 L1TD1 538832 sc-eQTL 5.74e-01 0.0442 0.0784 0.762 intMono L2
ENSG00000079739 PGM1 -859730 sc-eQTL 9.04e-01 -0.0115 0.0954 0.762 ncMono L2
ENSG00000088035 ALG6 -633894 sc-eQTL 3.94e-01 0.0893 0.105 0.762 ncMono L2
ENSG00000116641 DOCK7 45295 sc-eQTL 2.56e-01 0.117 0.103 0.762 ncMono L2
ENSG00000125703 ATG4C -50451 sc-eQTL 6.26e-01 0.047 0.0963 0.762 ncMono L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.69e-01 0.0167 0.101 0.762 ncMono L2
ENSG00000162607 USP1 297384 sc-eQTL 9.00e-01 0.0129 0.103 0.762 ncMono L2
ENSG00000240563 L1TD1 538832 sc-eQTL 1.64e-01 -0.102 0.0727 0.762 ncMono L2
ENSG00000079739 PGM1 -859730 sc-eQTL 5.98e-01 -0.0602 0.114 0.751 pDC L2
ENSG00000088035 ALG6 -633894 sc-eQTL 1.61e-01 0.156 0.111 0.751 pDC L2
ENSG00000116641 DOCK7 45295 sc-eQTL 1.89e-01 -0.149 0.113 0.751 pDC L2
ENSG00000125703 ATG4C -50451 sc-eQTL 6.89e-01 0.0408 0.102 0.751 pDC L2
ENSG00000142856 ITGB3BP -860040 sc-eQTL 2.62e-01 -0.128 0.114 0.751 pDC L2
ENSG00000162607 USP1 297384 sc-eQTL 4.62e-02 0.231 0.115 0.751 pDC L2
ENSG00000203965 EFCAB7 -789691 sc-eQTL 5.95e-01 0.0539 0.101 0.751 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -859730 sc-eQTL 9.09e-01 0.0113 0.0983 0.761 B_Memory LOneK1K
ENSG00000088035 ALG6 -633894 sc-eQTL 4.42e-01 -0.0836 0.109 0.761 B_Memory LOneK1K
ENSG00000116641 DOCK7 45295 sc-eQTL 5.20e-01 0.0607 0.0942 0.761 B_Memory LOneK1K
ENSG00000125703 ATG4C -50451 sc-eQTL 6.02e-01 0.0398 0.0762 0.761 B_Memory LOneK1K
ENSG00000132849 PATJ 991275 sc-eQTL 5.37e-01 -0.0521 0.0844 0.761 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -860040 sc-eQTL 1.70e-01 -0.137 0.0997 0.761 B_Memory LOneK1K
ENSG00000162607 USP1 297384 sc-eQTL 1.18e-02 0.243 0.0958 0.761 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -789691 sc-eQTL 8.66e-01 -0.0176 0.104 0.761 B_Memory LOneK1K
ENSG00000079739 PGM1 -859730 sc-eQTL 4.54e-01 0.0764 0.102 0.761 B_Naive LOneK1K
ENSG00000088035 ALG6 -633894 sc-eQTL 4.86e-01 -0.0732 0.105 0.761 B_Naive LOneK1K
ENSG00000116641 DOCK7 45295 sc-eQTL 7.58e-01 0.0303 0.0981 0.761 B_Naive LOneK1K
ENSG00000125703 ATG4C -50451 sc-eQTL 3.94e-01 -0.0638 0.0747 0.761 B_Naive LOneK1K
ENSG00000132849 PATJ 991275 sc-eQTL 7.91e-01 -0.0237 0.0895 0.761 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -860040 sc-eQTL 6.63e-01 -0.0462 0.106 0.761 B_Naive LOneK1K
ENSG00000162607 USP1 297384 sc-eQTL 6.81e-01 -0.0375 0.0909 0.761 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -789691 sc-eQTL 4.98e-01 0.0722 0.106 0.761 B_Naive LOneK1K
ENSG00000079739 PGM1 -859730 sc-eQTL 4.81e-01 -0.0676 0.0957 0.761 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -633894 sc-eQTL 3.73e-03 -0.267 0.091 0.761 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 45295 sc-eQTL 1.54e-01 0.133 0.093 0.761 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -50451 sc-eQTL 6.03e-01 0.0336 0.0645 0.761 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -860040 sc-eQTL 9.74e-01 -0.00316 0.0956 0.761 CD14_Mono LOneK1K
ENSG00000162607 USP1 297384 sc-eQTL 7.64e-01 -0.0245 0.0816 0.761 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 538832 sc-eQTL 9.93e-01 -0.000827 0.0885 0.761 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -859730 sc-eQTL 5.01e-01 0.0622 0.0922 0.763 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -633894 sc-eQTL 3.28e-01 0.103 0.105 0.763 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 45295 sc-eQTL 5.07e-01 0.0689 0.104 0.763 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -50451 sc-eQTL 9.74e-02 0.146 0.0878 0.763 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.71e-01 -0.0167 0.103 0.763 CD16_Mono LOneK1K
ENSG00000162607 USP1 297384 sc-eQTL 4.65e-01 -0.0705 0.0963 0.763 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 538832 sc-eQTL 2.05e-01 -0.0832 0.0655 0.763 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -859730 sc-eQTL 7.61e-01 0.0238 0.0781 0.761 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -633894 sc-eQTL 2.81e-01 0.101 0.0935 0.761 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 45295 sc-eQTL 5.13e-02 0.163 0.0832 0.761 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -50451 sc-eQTL 3.44e-01 0.0793 0.0837 0.761 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 991275 sc-eQTL 3.39e-01 -0.0864 0.0902 0.761 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -860040 sc-eQTL 8.34e-01 0.0209 0.0993 0.761 NK_CD56dim LOneK1K
ENSG00000162607 USP1 297384 sc-eQTL 8.56e-01 0.0163 0.0902 0.761 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -789691 sc-eQTL 3.07e-01 0.112 0.109 0.761 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 45313 eQTL 2.0500000000000002e-26 0.26 0.0237 0.0 0.0 0.238
ENSG00000125703 ATG4C -50451 eQTL 0.00187 0.0592 0.019 0.0 0.0 0.238
ENSG00000132855 ANGPTL3 136194 pQTL 1.1e-05 0.146 0.0331 0.0 0.0 0.243
ENSG00000162607 USP1 297384 eQTL 6.25e-11 0.0945 0.0143 0.0 0.0 0.238

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 45313 9.84e-06 1.18e-05 2e-06 6.53e-06 2.38e-06 5.21e-06 1.31e-05 2.15e-06 1.03e-05 5.58e-06 1.39e-05 6.02e-06 1.8e-05 3.97e-06 3.49e-06 6.61e-06 5.99e-06 9.07e-06 3.17e-06 2.92e-06 6.05e-06 1.06e-05 9.94e-06 3.36e-06 1.9e-05 4.29e-06 5.79e-06 4.83e-06 1.31e-05 1.18e-05 6.63e-06 9.7e-07 1.23e-06 3.58e-06 4.89e-06 2.85e-06 1.83e-06 2e-06 2.01e-06 1.23e-06 1.05e-06 1.35e-05 1.57e-06 2.66e-07 8.64e-07 1.75e-06 1.75e-06 6.85e-07 4.84e-07
ENSG00000162607 USP1 297384 1.28e-06 9.53e-07 2.65e-07 9.2e-07 3.23e-07 5.32e-07 1.59e-06 3.43e-07 1.38e-06 4.24e-07 1.48e-06 6.62e-07 2.01e-06 2.88e-07 5.72e-07 8.28e-07 8.49e-07 6.45e-07 7.52e-07 6.84e-07 5.8e-07 1.35e-06 8.84e-07 6.51e-07 2.26e-06 3.87e-07 8.29e-07 7.27e-07 1.31e-06 1.36e-06 6.04e-07 2.42e-07 1.97e-07 6.8e-07 5.8e-07 4.5e-07 5.17e-07 2.46e-07 3.74e-07 2.55e-07 2.67e-07 1.52e-06 1.22e-07 1.14e-07 1.79e-07 1.29e-07 2.2e-07 6.08e-08 1.34e-07