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Genes within 1Mb (chr1:62715289:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -878122 sc-eQTL 9.66e-01 -0.00745 0.173 0.052 DC L1
ENSG00000088035 ALG6 -652286 sc-eQTL 6.49e-01 -0.0814 0.179 0.052 DC L1
ENSG00000116641 DOCK7 26903 sc-eQTL 7.29e-01 0.0635 0.183 0.052 DC L1
ENSG00000125703 ATG4C -68843 sc-eQTL 3.36e-01 -0.138 0.143 0.052 DC L1
ENSG00000142856 ITGB3BP -878432 sc-eQTL 4.08e-01 -0.166 0.2 0.052 DC L1
ENSG00000162604 TM2D1 989866 sc-eQTL 9.93e-01 0.00147 0.167 0.052 DC L1
ENSG00000162607 USP1 278992 sc-eQTL 5.32e-01 -0.109 0.175 0.052 DC L1
ENSG00000203965 EFCAB7 -808083 sc-eQTL 6.71e-01 0.074 0.174 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -878122 sc-eQTL 1.36e-02 0.475 0.191 0.052 CD4_CTL L2
ENSG00000088035 ALG6 -652286 sc-eQTL 1.69e-01 0.281 0.204 0.052 CD4_CTL L2
ENSG00000116641 DOCK7 26903 sc-eQTL 8.67e-01 0.0299 0.179 0.052 CD4_CTL L2
ENSG00000125703 ATG4C -68843 sc-eQTL 9.58e-01 -0.00986 0.185 0.052 CD4_CTL L2
ENSG00000132849 PATJ 972883 sc-eQTL 5.17e-01 0.0962 0.148 0.052 CD4_CTL L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 4.93e-01 -0.136 0.198 0.052 CD4_CTL L2
ENSG00000162604 TM2D1 989866 sc-eQTL 6.88e-01 -0.0762 0.19 0.052 CD4_CTL L2
ENSG00000162607 USP1 278992 sc-eQTL 9.25e-01 -0.0178 0.189 0.052 CD4_CTL L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 7.24e-01 0.0665 0.188 0.052 CD4_CTL L2
ENSG00000079739 PGM1 -878122 sc-eQTL 5.47e-01 -0.121 0.2 0.053 CD8_TEM L2
ENSG00000088035 ALG6 -652286 sc-eQTL 8.95e-01 -0.0266 0.201 0.053 CD8_TEM L2
ENSG00000116641 DOCK7 26903 sc-eQTL 5.14e-01 -0.127 0.195 0.053 CD8_TEM L2
ENSG00000125703 ATG4C -68843 sc-eQTL 3.22e-01 -0.186 0.187 0.053 CD8_TEM L2
ENSG00000132849 PATJ 972883 sc-eQTL 1.92e-01 0.247 0.189 0.053 CD8_TEM L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 9.87e-01 0.00323 0.203 0.053 CD8_TEM L2
ENSG00000162604 TM2D1 989866 sc-eQTL 5.48e-02 0.37 0.191 0.053 CD8_TEM L2
ENSG00000162607 USP1 278992 sc-eQTL 1.19e-01 0.301 0.192 0.053 CD8_TEM L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 9.77e-01 -0.00571 0.197 0.053 CD8_TEM L2
ENSG00000079739 PGM1 -878122 sc-eQTL 9.17e-01 0.0199 0.192 0.051 NK_CD56bright L2
ENSG00000088035 ALG6 -652286 sc-eQTL 2.26e-01 0.238 0.196 0.051 NK_CD56bright L2
ENSG00000116641 DOCK7 26903 sc-eQTL 1.88e-01 -0.224 0.17 0.051 NK_CD56bright L2
ENSG00000125703 ATG4C -68843 sc-eQTL 6.99e-01 -0.0737 0.19 0.051 NK_CD56bright L2
ENSG00000132849 PATJ 972883 sc-eQTL 8.64e-01 0.0321 0.187 0.051 NK_CD56bright L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 7.70e-01 0.058 0.198 0.051 NK_CD56bright L2
ENSG00000162604 TM2D1 989866 sc-eQTL 9.51e-01 0.0118 0.19 0.051 NK_CD56bright L2
ENSG00000162607 USP1 278992 sc-eQTL 7.44e-01 0.0668 0.204 0.051 NK_CD56bright L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 2.24e-01 0.238 0.195 0.051 NK_CD56bright L2
ENSG00000079739 PGM1 -878122 sc-eQTL 9.40e-01 0.0156 0.205 0.053 NK_HLA L2
ENSG00000088035 ALG6 -652286 sc-eQTL 4.40e-02 0.426 0.21 0.053 NK_HLA L2
ENSG00000116641 DOCK7 26903 sc-eQTL 1.77e-01 -0.219 0.162 0.053 NK_HLA L2
ENSG00000125703 ATG4C -68843 sc-eQTL 7.45e-01 0.0614 0.189 0.053 NK_HLA L2
ENSG00000132849 PATJ 972883 sc-eQTL 7.15e-01 -0.064 0.175 0.053 NK_HLA L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 7.62e-01 -0.0601 0.198 0.053 NK_HLA L2
ENSG00000162604 TM2D1 989866 sc-eQTL 4.18e-01 -0.162 0.199 0.053 NK_HLA L2
ENSG00000162607 USP1 278992 sc-eQTL 8.32e-01 0.0443 0.208 0.053 NK_HLA L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 3.21e-01 -0.187 0.189 0.053 NK_HLA L2
ENSG00000079739 PGM1 -878122 sc-eQTL 1.72e-01 -0.319 0.232 0.052 PB L2
ENSG00000088035 ALG6 -652286 sc-eQTL 2.07e-01 0.31 0.244 0.052 PB L2
ENSG00000116641 DOCK7 26903 sc-eQTL 3.05e-01 -0.27 0.262 0.052 PB L2
ENSG00000125703 ATG4C -68843 sc-eQTL 3.73e-01 0.205 0.229 0.052 PB L2
ENSG00000132849 PATJ 972883 sc-eQTL 5.68e-02 -0.451 0.235 0.052 PB L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 8.36e-01 -0.0476 0.229 0.052 PB L2
ENSG00000162604 TM2D1 989866 sc-eQTL 8.29e-01 0.0499 0.231 0.052 PB L2
ENSG00000162607 USP1 278992 sc-eQTL 9.44e-02 0.38 0.225 0.052 PB L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 3.38e-01 -0.241 0.251 0.052 PB L2
ENSG00000079739 PGM1 -878122 sc-eQTL 6.25e-01 -0.0887 0.181 0.05 Pro_T L2
ENSG00000088035 ALG6 -652286 sc-eQTL 1.38e-01 -0.273 0.183 0.05 Pro_T L2
ENSG00000116641 DOCK7 26903 sc-eQTL 4.31e-01 -0.146 0.185 0.05 Pro_T L2
ENSG00000125703 ATG4C -68843 sc-eQTL 5.03e-01 -0.109 0.162 0.05 Pro_T L2
ENSG00000132849 PATJ 972883 sc-eQTL 2.59e-01 -0.199 0.176 0.05 Pro_T L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 5.54e-01 0.0962 0.162 0.05 Pro_T L2
ENSG00000162604 TM2D1 989866 sc-eQTL 7.41e-01 0.0654 0.198 0.05 Pro_T L2
ENSG00000162607 USP1 278992 sc-eQTL 5.59e-01 -0.0653 0.112 0.05 Pro_T L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 9.38e-01 0.0146 0.189 0.05 Pro_T L2
ENSG00000079739 PGM1 -878122 sc-eQTL 6.14e-01 -0.0948 0.188 0.051 cDC L2
ENSG00000088035 ALG6 -652286 sc-eQTL 3.93e-01 0.163 0.19 0.051 cDC L2
ENSG00000116641 DOCK7 26903 sc-eQTL 5.12e-01 -0.123 0.187 0.051 cDC L2
ENSG00000125703 ATG4C -68843 sc-eQTL 3.27e-01 -0.159 0.162 0.051 cDC L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 9.51e-01 0.0126 0.206 0.051 cDC L2
ENSG00000162604 TM2D1 989866 sc-eQTL 7.84e-01 -0.0556 0.203 0.051 cDC L2
ENSG00000162607 USP1 278992 sc-eQTL 6.55e-01 -0.0819 0.183 0.051 cDC L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 7.45e-01 0.0538 0.165 0.051 cDC L2
ENSG00000079739 PGM1 -878122 sc-eQTL 5.56e-01 -0.137 0.232 0.052 gdT L2
ENSG00000088035 ALG6 -652286 sc-eQTL 9.98e-01 -0.000624 0.248 0.052 gdT L2
ENSG00000116641 DOCK7 26903 sc-eQTL 8.41e-01 -0.049 0.243 0.052 gdT L2
ENSG00000125703 ATG4C -68843 sc-eQTL 2.30e-01 0.279 0.231 0.052 gdT L2
ENSG00000132849 PATJ 972883 sc-eQTL 6.32e-01 0.109 0.227 0.052 gdT L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 8.12e-01 -0.0587 0.247 0.052 gdT L2
ENSG00000162604 TM2D1 989866 sc-eQTL 8.35e-01 -0.0497 0.239 0.052 gdT L2
ENSG00000162607 USP1 278992 sc-eQTL 3.40e-01 0.223 0.233 0.052 gdT L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 7.11e-01 -0.09 0.243 0.052 gdT L2
ENSG00000079739 PGM1 -878122 sc-eQTL 7.14e-01 -0.0746 0.203 0.051 intMono L2
ENSG00000088035 ALG6 -652286 sc-eQTL 8.62e-01 0.0329 0.189 0.051 intMono L2
ENSG00000116641 DOCK7 26903 sc-eQTL 3.37e-01 0.186 0.193 0.051 intMono L2
ENSG00000125703 ATG4C -68843 sc-eQTL 9.60e-01 -0.00932 0.185 0.051 intMono L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 7.83e-01 -0.056 0.203 0.051 intMono L2
ENSG00000162604 TM2D1 989866 sc-eQTL 6.40e-01 -0.0914 0.195 0.051 intMono L2
ENSG00000162607 USP1 278992 sc-eQTL 2.91e-01 0.218 0.206 0.051 intMono L2
ENSG00000240563 L1TD1 520440 sc-eQTL 9.79e-01 0.00402 0.152 0.051 intMono L2
ENSG00000079739 PGM1 -878122 sc-eQTL 8.17e-01 -0.0472 0.204 0.056 pDC L2
ENSG00000088035 ALG6 -652286 sc-eQTL 1.77e-01 -0.267 0.197 0.056 pDC L2
ENSG00000116641 DOCK7 26903 sc-eQTL 6.42e-01 0.0943 0.202 0.056 pDC L2
ENSG00000125703 ATG4C -68843 sc-eQTL 8.62e-01 -0.0316 0.182 0.056 pDC L2
ENSG00000142856 ITGB3BP -878432 sc-eQTL 4.13e-01 0.167 0.204 0.056 pDC L2
ENSG00000162604 TM2D1 989866 sc-eQTL 4.68e-01 -0.129 0.178 0.056 pDC L2
ENSG00000162607 USP1 278992 sc-eQTL 6.49e-01 -0.0948 0.208 0.056 pDC L2
ENSG00000203965 EFCAB7 -808083 sc-eQTL 4.91e-01 0.124 0.18 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 26921 eQTL 6e-09 -0.351 0.0598 0.0 0.0 0.0334
ENSG00000132855 ANGPTL3 117802 pQTL 7.86e-05 -0.299 0.0755 0.0 0.0 0.0372
ENSG00000162607 USP1 278992 eQTL 0.00035 -0.126 0.0352 0.0 0.0 0.0334

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 26921 3.39e-05 3.22e-05 5.92e-06 1.51e-05 5.54e-06 1.38e-05 4.1e-05 4.37e-06 2.98e-05 1.47e-05 3.69e-05 1.63e-05 4.54e-05 1.32e-05 6.69e-06 1.75e-05 1.63e-05 2.41e-05 7.56e-06 6.43e-06 1.42e-05 3.08e-05 2.94e-05 8.53e-06 4.24e-05 7.68e-06 1.31e-05 1.21e-05 2.94e-05 2.32e-05 1.96e-05 1.59e-06 2.41e-06 6.8e-06 1.15e-05 5.61e-06 3.09e-06 3.18e-06 4.46e-06 3.2e-06 1.73e-06 3.61e-05 3.49e-06 3.59e-07 2.21e-06 3.65e-06 4.09e-06 1.53e-06 1.56e-06
ENSG00000116652 \N -831793 7.57e-07 8.69e-07 1.45e-07 3.87e-07 1.05e-07 3.36e-07 6.23e-07 2.68e-07 1.13e-06 3.64e-07 1.35e-06 5.53e-07 1.46e-06 2.33e-07 4.55e-07 2.89e-07 4.3e-07 4.72e-07 2.25e-07 1.51e-07 2.53e-07 5.66e-07 3.7e-07 7.36e-08 1.35e-06 2.01e-07 3.68e-07 3.95e-07 4.22e-07 7.36e-07 7.64e-07 5.93e-08 5.75e-08 1.54e-07 3.03e-07 8.32e-08 8.28e-08 1.06e-07 6.74e-08 5.88e-08 5.81e-08 7.2e-07 5.73e-08 4.23e-08 1.01e-07 2.71e-08 8.13e-08 3.79e-08 5.54e-08