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Genes within 1Mb (chr1:62552499:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -815076 sc-eQTL 9.56e-01 0.00536 0.0964 0.791 B L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 9.43e-02 0.161 0.0958 0.791 B L1
ENSG00000125703 ATG4C -231633 sc-eQTL 7.63e-01 -0.0202 0.067 0.791 B L1
ENSG00000132849 PATJ 810093 sc-eQTL 6.87e-01 -0.0328 0.0813 0.791 B L1
ENSG00000162604 TM2D1 827076 sc-eQTL 1.05e-01 -0.131 0.0807 0.791 B L1
ENSG00000162607 USP1 116202 sc-eQTL 5.46e-01 -0.056 0.0925 0.791 B L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.60e-01 0.0193 0.109 0.791 B L1
ENSG00000088035 ALG6 -815076 sc-eQTL 7.88e-01 0.0236 0.0877 0.791 CD4T L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.47e-01 0.0677 0.0887 0.791 CD4T L1
ENSG00000125703 ATG4C -231633 sc-eQTL 9.33e-01 0.00607 0.0717 0.791 CD4T L1
ENSG00000132849 PATJ 810093 sc-eQTL 3.23e-01 0.0575 0.0581 0.791 CD4T L1
ENSG00000162604 TM2D1 827076 sc-eQTL 1.78e-01 0.0952 0.0705 0.791 CD4T L1
ENSG00000162607 USP1 116202 sc-eQTL 8.38e-01 -0.0142 0.0696 0.791 CD4T L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 2.11e-01 -0.114 0.0911 0.791 CD4T L1
ENSG00000088035 ALG6 -815076 sc-eQTL 1.00e+00 -1.39e-06 0.0973 0.791 CD8T L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 1.50e-01 0.142 0.098 0.791 CD8T L1
ENSG00000125703 ATG4C -231633 sc-eQTL 2.61e-01 0.105 0.0933 0.791 CD8T L1
ENSG00000132849 PATJ 810093 sc-eQTL 4.66e-02 0.113 0.0565 0.791 CD8T L1
ENSG00000162604 TM2D1 827076 sc-eQTL 4.99e-01 0.0579 0.0856 0.791 CD8T L1
ENSG00000162607 USP1 116202 sc-eQTL 9.34e-01 0.00679 0.0815 0.791 CD8T L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.27e-01 -0.0228 0.104 0.791 CD8T L1
ENSG00000088035 ALG6 -815076 sc-eQTL 9.61e-01 -0.00486 0.0998 0.791 DC L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 6.68e-01 0.0439 0.102 0.791 DC L1
ENSG00000125703 ATG4C -231633 sc-eQTL 4.41e-02 0.161 0.0793 0.791 DC L1
ENSG00000162604 TM2D1 827076 sc-eQTL 9.99e-01 5.99e-05 0.0933 0.791 DC L1
ENSG00000162607 USP1 116202 sc-eQTL 3.83e-01 0.0853 0.0975 0.791 DC L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.66e-01 0.0881 0.0972 0.791 DC L1
ENSG00000088035 ALG6 -815076 sc-eQTL 7.63e-02 -0.176 0.0987 0.791 Mono L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 8.03e-03 0.253 0.0946 0.791 Mono L1
ENSG00000125703 ATG4C -231633 sc-eQTL 4.57e-01 0.0483 0.0649 0.791 Mono L1
ENSG00000162604 TM2D1 827076 sc-eQTL 1.82e-02 -0.169 0.0712 0.791 Mono L1
ENSG00000162607 USP1 116202 sc-eQTL 6.83e-01 0.0345 0.0844 0.791 Mono L1
ENSG00000240563 L1TD1 357650 sc-eQTL 5.18e-01 -0.0509 0.0787 0.791 Mono L1
ENSG00000088035 ALG6 -815076 sc-eQTL 7.56e-01 0.0296 0.0952 0.792 NK L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 9.57e-03 0.202 0.0772 0.792 NK L1
ENSG00000125703 ATG4C -231633 sc-eQTL 6.22e-01 0.0415 0.0842 0.792 NK L1
ENSG00000132849 PATJ 810093 sc-eQTL 2.21e-02 -0.188 0.0815 0.792 NK L1
ENSG00000162604 TM2D1 827076 sc-eQTL 3.79e-01 0.0744 0.0844 0.792 NK L1
ENSG00000162607 USP1 116202 sc-eQTL 4.99e-01 -0.0632 0.0934 0.792 NK L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.13e-01 0.0125 0.114 0.792 NK L1
ENSG00000088035 ALG6 -815076 sc-eQTL 3.22e-01 0.0925 0.0932 0.791 Other_T L1
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.86e-01 0.0664 0.0953 0.791 Other_T L1
ENSG00000125703 ATG4C -231633 sc-eQTL 5.75e-01 0.0464 0.0825 0.791 Other_T L1
ENSG00000132849 PATJ 810093 sc-eQTL 2.84e-01 0.0824 0.0767 0.791 Other_T L1
ENSG00000162604 TM2D1 827076 sc-eQTL 2.30e-01 -0.108 0.0899 0.791 Other_T L1
ENSG00000162607 USP1 116202 sc-eQTL 7.76e-01 -0.0181 0.0634 0.791 Other_T L1
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.28e-01 0.11 0.113 0.791 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -815076 sc-eQTL 5.57e-01 0.0708 0.12 0.796 B_Activated L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 9.38e-01 -0.0087 0.112 0.796 B_Activated L2
ENSG00000125703 ATG4C -231633 sc-eQTL 4.20e-01 0.0952 0.118 0.796 B_Activated L2
ENSG00000132849 PATJ 810093 sc-eQTL 2.48e-02 0.224 0.0988 0.796 B_Activated L2
ENSG00000162604 TM2D1 827076 sc-eQTL 8.84e-02 0.216 0.126 0.796 B_Activated L2
ENSG00000162607 USP1 116202 sc-eQTL 1.62e-01 0.174 0.124 0.796 B_Activated L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.90e-01 -0.00142 0.109 0.796 B_Activated L2
ENSG00000088035 ALG6 -815076 sc-eQTL 4.92e-01 -0.0782 0.114 0.79 B_Intermediate L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.29e-01 0.0859 0.109 0.79 B_Intermediate L2
ENSG00000125703 ATG4C -231633 sc-eQTL 6.05e-01 0.0476 0.092 0.79 B_Intermediate L2
ENSG00000132849 PATJ 810093 sc-eQTL 7.84e-01 -0.0274 0.0996 0.79 B_Intermediate L2
ENSG00000162604 TM2D1 827076 sc-eQTL 7.91e-01 -0.0278 0.105 0.79 B_Intermediate L2
ENSG00000162607 USP1 116202 sc-eQTL 8.09e-01 0.0265 0.109 0.79 B_Intermediate L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 6.94e-01 -0.0428 0.109 0.79 B_Intermediate L2
ENSG00000088035 ALG6 -815076 sc-eQTL 7.16e-01 0.0405 0.111 0.791 B_Memory L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 2.21e-01 0.128 0.104 0.791 B_Memory L2
ENSG00000125703 ATG4C -231633 sc-eQTL 9.36e-01 -0.00799 0.099 0.791 B_Memory L2
ENSG00000132849 PATJ 810093 sc-eQTL 2.74e-02 -0.217 0.0977 0.791 B_Memory L2
ENSG00000162604 TM2D1 827076 sc-eQTL 7.02e-02 -0.201 0.11 0.791 B_Memory L2
ENSG00000162607 USP1 116202 sc-eQTL 4.03e-01 0.0955 0.114 0.791 B_Memory L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 4.01e-01 0.0944 0.112 0.791 B_Memory L2
ENSG00000088035 ALG6 -815076 sc-eQTL 6.74e-01 -0.0466 0.111 0.791 B_Naive1 L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 8.81e-01 0.0159 0.106 0.791 B_Naive1 L2
ENSG00000125703 ATG4C -231633 sc-eQTL 8.11e-01 0.0195 0.0818 0.791 B_Naive1 L2
ENSG00000132849 PATJ 810093 sc-eQTL 6.50e-01 0.0478 0.105 0.791 B_Naive1 L2
ENSG00000162604 TM2D1 827076 sc-eQTL 9.44e-01 0.00674 0.0967 0.791 B_Naive1 L2
ENSG00000162607 USP1 116202 sc-eQTL 2.90e-01 -0.101 0.0952 0.791 B_Naive1 L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.91e-01 -0.0159 0.116 0.791 B_Naive1 L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.87e-01 -0.0982 0.113 0.792 B_Naive2 L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.15e-01 0.0891 0.109 0.792 B_Naive2 L2
ENSG00000125703 ATG4C -231633 sc-eQTL 1.20e-01 -0.163 0.104 0.792 B_Naive2 L2
ENSG00000132849 PATJ 810093 sc-eQTL 9.11e-01 -0.0121 0.108 0.792 B_Naive2 L2
ENSG00000162604 TM2D1 827076 sc-eQTL 3.93e-03 -0.311 0.107 0.792 B_Naive2 L2
ENSG00000162607 USP1 116202 sc-eQTL 1.95e-01 -0.141 0.108 0.792 B_Naive2 L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.41e-01 0.0227 0.113 0.792 B_Naive2 L2
ENSG00000088035 ALG6 -815076 sc-eQTL 4.25e-01 -0.0924 0.116 0.791 CD4_CTL L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 1.26e-01 0.155 0.101 0.791 CD4_CTL L2
ENSG00000125703 ATG4C -231633 sc-eQTL 6.27e-01 0.0509 0.105 0.791 CD4_CTL L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.82e-01 -0.112 0.0835 0.791 CD4_CTL L2
ENSG00000162604 TM2D1 827076 sc-eQTL 7.09e-01 0.0401 0.107 0.791 CD4_CTL L2
ENSG00000162607 USP1 116202 sc-eQTL 3.59e-01 0.0979 0.106 0.791 CD4_CTL L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 2.68e-01 -0.118 0.106 0.791 CD4_CTL L2
ENSG00000088035 ALG6 -815076 sc-eQTL 2.41e-01 0.113 0.0962 0.791 CD4_Naive L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 8.28e-01 -0.0207 0.0948 0.791 CD4_Naive L2
ENSG00000125703 ATG4C -231633 sc-eQTL 5.95e-01 0.0446 0.0838 0.791 CD4_Naive L2
ENSG00000132849 PATJ 810093 sc-eQTL 7.56e-01 0.0183 0.0588 0.791 CD4_Naive L2
ENSG00000162604 TM2D1 827076 sc-eQTL 1.03e-01 0.138 0.0841 0.791 CD4_Naive L2
ENSG00000162607 USP1 116202 sc-eQTL 5.84e-01 -0.0429 0.0782 0.791 CD4_Naive L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 2.97e-01 -0.106 0.101 0.791 CD4_Naive L2
ENSG00000088035 ALG6 -815076 sc-eQTL 8.71e-02 -0.184 0.107 0.791 CD4_TCM L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 2.92e-01 0.101 0.0953 0.791 CD4_TCM L2
ENSG00000125703 ATG4C -231633 sc-eQTL 9.91e-01 0.00111 0.093 0.791 CD4_TCM L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.35e-01 0.112 0.0743 0.791 CD4_TCM L2
ENSG00000162604 TM2D1 827076 sc-eQTL 2.15e-01 0.108 0.0867 0.791 CD4_TCM L2
ENSG00000162607 USP1 116202 sc-eQTL 6.61e-01 -0.0394 0.0899 0.791 CD4_TCM L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 7.98e-01 0.0272 0.106 0.791 CD4_TCM L2
ENSG00000088035 ALG6 -815076 sc-eQTL 9.59e-01 -0.00573 0.112 0.791 CD4_TEM L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 8.53e-01 -0.0202 0.109 0.791 CD4_TEM L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.10e-01 -0.107 0.106 0.791 CD4_TEM L2
ENSG00000132849 PATJ 810093 sc-eQTL 7.69e-01 0.029 0.0987 0.791 CD4_TEM L2
ENSG00000162604 TM2D1 827076 sc-eQTL 1.83e-01 0.138 0.103 0.791 CD4_TEM L2
ENSG00000162607 USP1 116202 sc-eQTL 1.47e-01 0.15 0.103 0.791 CD4_TEM L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 7.52e-01 -0.0359 0.113 0.791 CD4_TEM L2
ENSG00000088035 ALG6 -815076 sc-eQTL 4.78e-01 0.0763 0.107 0.791 CD8_CTL L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 6.33e-02 0.189 0.101 0.791 CD8_CTL L2
ENSG00000125703 ATG4C -231633 sc-eQTL 1.55e-02 0.261 0.107 0.791 CD8_CTL L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.90e-01 0.135 0.102 0.791 CD8_CTL L2
ENSG00000162604 TM2D1 827076 sc-eQTL 7.92e-01 0.0249 0.0943 0.791 CD8_CTL L2
ENSG00000162607 USP1 116202 sc-eQTL 5.30e-01 -0.0635 0.101 0.791 CD8_CTL L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 6.06e-01 -0.0597 0.115 0.791 CD8_CTL L2
ENSG00000088035 ALG6 -815076 sc-eQTL 9.52e-01 -0.00629 0.105 0.791 CD8_Naive L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 1.23e-01 -0.167 0.108 0.791 CD8_Naive L2
ENSG00000125703 ATG4C -231633 sc-eQTL 5.98e-01 0.0548 0.104 0.791 CD8_Naive L2
ENSG00000132849 PATJ 810093 sc-eQTL 7.67e-02 0.14 0.079 0.791 CD8_Naive L2
ENSG00000162604 TM2D1 827076 sc-eQTL 7.82e-01 0.027 0.0972 0.791 CD8_Naive L2
ENSG00000162607 USP1 116202 sc-eQTL 8.16e-01 0.0208 0.0891 0.791 CD8_Naive L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.66e-01 0.0168 0.0993 0.791 CD8_Naive L2
ENSG00000088035 ALG6 -815076 sc-eQTL 8.68e-01 0.0193 0.116 0.789 CD8_TCM L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.03e-01 0.116 0.113 0.789 CD8_TCM L2
ENSG00000125703 ATG4C -231633 sc-eQTL 5.80e-01 -0.0641 0.115 0.789 CD8_TCM L2
ENSG00000132849 PATJ 810093 sc-eQTL 5.85e-01 -0.0581 0.106 0.789 CD8_TCM L2
ENSG00000162604 TM2D1 827076 sc-eQTL 2.82e-02 0.236 0.107 0.789 CD8_TCM L2
ENSG00000162607 USP1 116202 sc-eQTL 6.16e-01 0.0543 0.108 0.789 CD8_TCM L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.38e-01 -0.0089 0.114 0.789 CD8_TCM L2
ENSG00000088035 ALG6 -815076 sc-eQTL 1.17e-01 0.183 0.117 0.792 CD8_TEM L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.62e-01 -0.0837 0.114 0.792 CD8_TEM L2
ENSG00000125703 ATG4C -231633 sc-eQTL 5.64e-01 0.0631 0.109 0.792 CD8_TEM L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.45e-01 0.161 0.11 0.792 CD8_TEM L2
ENSG00000162604 TM2D1 827076 sc-eQTL 9.30e-01 0.00995 0.113 0.792 CD8_TEM L2
ENSG00000162607 USP1 116202 sc-eQTL 3.94e-01 0.0963 0.113 0.792 CD8_TEM L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 2.81e-01 0.124 0.114 0.792 CD8_TEM L2
ENSG00000088035 ALG6 -815076 sc-eQTL 8.79e-01 0.016 0.105 0.79 MAIT L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 5.06e-01 0.0671 0.101 0.79 MAIT L2
ENSG00000125703 ATG4C -231633 sc-eQTL 4.77e-01 0.0757 0.106 0.79 MAIT L2
ENSG00000132849 PATJ 810093 sc-eQTL 4.46e-01 0.0685 0.0898 0.79 MAIT L2
ENSG00000162604 TM2D1 827076 sc-eQTL 5.46e-01 -0.0618 0.102 0.79 MAIT L2
ENSG00000162607 USP1 116202 sc-eQTL 9.94e-01 0.000747 0.106 0.79 MAIT L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 2.59e-01 0.124 0.109 0.79 MAIT L2
ENSG00000088035 ALG6 -815076 sc-eQTL 9.75e-01 -0.00342 0.111 0.793 NK_CD56bright L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.69e-01 -0.0863 0.0959 0.793 NK_CD56bright L2
ENSG00000125703 ATG4C -231633 sc-eQTL 4.33e-01 -0.0842 0.107 0.793 NK_CD56bright L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.32e-01 -0.158 0.105 0.793 NK_CD56bright L2
ENSG00000162604 TM2D1 827076 sc-eQTL 6.57e-01 0.0476 0.107 0.793 NK_CD56bright L2
ENSG00000162607 USP1 116202 sc-eQTL 4.13e-01 0.0944 0.115 0.793 NK_CD56bright L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.97e-02 -0.181 0.11 0.793 NK_CD56bright L2
ENSG00000088035 ALG6 -815076 sc-eQTL 8.48e-01 0.0207 0.108 0.793 NK_CD56dim L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 7.77e-03 0.247 0.0921 0.793 NK_CD56dim L2
ENSG00000125703 ATG4C -231633 sc-eQTL 4.92e-01 -0.0654 0.095 0.793 NK_CD56dim L2
ENSG00000132849 PATJ 810093 sc-eQTL 1.08e-03 -0.333 0.101 0.793 NK_CD56dim L2
ENSG00000162604 TM2D1 827076 sc-eQTL 6.80e-01 0.0405 0.0979 0.793 NK_CD56dim L2
ENSG00000162607 USP1 116202 sc-eQTL 9.24e-01 0.00998 0.105 0.793 NK_CD56dim L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 6.51e-01 0.0529 0.117 0.793 NK_CD56dim L2
ENSG00000088035 ALG6 -815076 sc-eQTL 6.10e-01 -0.0604 0.118 0.79 NK_HLA L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.64e-01 0.0822 0.0903 0.79 NK_HLA L2
ENSG00000125703 ATG4C -231633 sc-eQTL 6.61e-01 0.0462 0.105 0.79 NK_HLA L2
ENSG00000132849 PATJ 810093 sc-eQTL 2.43e-01 -0.114 0.0974 0.79 NK_HLA L2
ENSG00000162604 TM2D1 827076 sc-eQTL 6.64e-01 0.0483 0.111 0.79 NK_HLA L2
ENSG00000162607 USP1 116202 sc-eQTL 6.33e-01 0.0554 0.116 0.79 NK_HLA L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.41e-01 0.1 0.105 0.79 NK_HLA L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.77e-01 0.0922 0.104 0.793 NK_cytokine L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.41e-04 0.335 0.0938 0.793 NK_cytokine L2
ENSG00000125703 ATG4C -231633 sc-eQTL 2.32e-01 0.118 0.0985 0.793 NK_cytokine L2
ENSG00000132849 PATJ 810093 sc-eQTL 5.08e-01 0.0691 0.104 0.793 NK_cytokine L2
ENSG00000162604 TM2D1 827076 sc-eQTL 5.56e-01 0.0601 0.102 0.793 NK_cytokine L2
ENSG00000162607 USP1 116202 sc-eQTL 6.87e-02 -0.195 0.107 0.793 NK_cytokine L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 1.92e-01 0.142 0.109 0.793 NK_cytokine L2
ENSG00000088035 ALG6 -815076 sc-eQTL 6.17e-01 0.0667 0.133 0.77 PB L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 7.47e-01 0.0459 0.142 0.77 PB L2
ENSG00000125703 ATG4C -231633 sc-eQTL 2.51e-01 -0.142 0.123 0.77 PB L2
ENSG00000132849 PATJ 810093 sc-eQTL 2.37e-01 -0.152 0.128 0.77 PB L2
ENSG00000162604 TM2D1 827076 sc-eQTL 3.71e-01 -0.112 0.125 0.77 PB L2
ENSG00000162607 USP1 116202 sc-eQTL 8.05e-01 0.0304 0.123 0.77 PB L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.14e-01 0.0148 0.136 0.77 PB L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.71e-01 0.0936 0.104 0.791 Pro_T L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 1.11e-01 0.167 0.104 0.791 Pro_T L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.76e-01 -0.0813 0.0917 0.791 Pro_T L2
ENSG00000132849 PATJ 810093 sc-eQTL 6.42e-01 0.0467 0.1 0.791 Pro_T L2
ENSG00000162604 TM2D1 827076 sc-eQTL 8.92e-01 -0.0153 0.112 0.791 Pro_T L2
ENSG00000162607 USP1 116202 sc-eQTL 4.12e-01 0.0519 0.0632 0.791 Pro_T L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 9.71e-01 -0.00394 0.107 0.791 Pro_T L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.37e-01 0.108 0.112 0.791 Treg L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 2.62e-01 0.116 0.103 0.791 Treg L2
ENSG00000125703 ATG4C -231633 sc-eQTL 2.92e-01 0.111 0.105 0.791 Treg L2
ENSG00000132849 PATJ 810093 sc-eQTL 9.23e-01 0.00945 0.0978 0.791 Treg L2
ENSG00000162604 TM2D1 827076 sc-eQTL 8.68e-01 -0.0179 0.108 0.791 Treg L2
ENSG00000162607 USP1 116202 sc-eQTL 9.83e-01 0.00233 0.107 0.791 Treg L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.46e-01 -0.0996 0.105 0.791 Treg L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.45e-01 -0.104 0.11 0.798 cDC L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 2.57e-01 0.122 0.107 0.798 cDC L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.50e-01 0.0875 0.0934 0.798 cDC L2
ENSG00000162604 TM2D1 827076 sc-eQTL 6.85e-01 0.0476 0.117 0.798 cDC L2
ENSG00000162607 USP1 116202 sc-eQTL 5.97e-01 -0.0559 0.106 0.798 cDC L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.55e-01 -0.0174 0.0953 0.798 cDC L2
ENSG00000088035 ALG6 -815076 sc-eQTL 2.46e-01 -0.116 0.1 0.791 cMono_IL1B L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 6.56e-03 0.285 0.104 0.791 cMono_IL1B L2
ENSG00000125703 ATG4C -231633 sc-eQTL 7.84e-01 0.0204 0.0744 0.791 cMono_IL1B L2
ENSG00000162604 TM2D1 827076 sc-eQTL 3.89e-01 -0.0661 0.0766 0.791 cMono_IL1B L2
ENSG00000162607 USP1 116202 sc-eQTL 6.91e-01 -0.037 0.0929 0.791 cMono_IL1B L2
ENSG00000240563 L1TD1 357650 sc-eQTL 9.02e-01 0.0115 0.0933 0.791 cMono_IL1B L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.16e-02 -0.242 0.112 0.791 cMono_S100A L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.65e-02 0.208 0.104 0.791 cMono_S100A L2
ENSG00000125703 ATG4C -231633 sc-eQTL 9.29e-01 0.00808 0.0908 0.791 cMono_S100A L2
ENSG00000162604 TM2D1 827076 sc-eQTL 9.69e-02 -0.154 0.0921 0.791 cMono_S100A L2
ENSG00000162607 USP1 116202 sc-eQTL 2.53e-01 0.121 0.105 0.791 cMono_S100A L2
ENSG00000240563 L1TD1 357650 sc-eQTL 9.26e-01 0.00819 0.0878 0.791 cMono_S100A L2
ENSG00000088035 ALG6 -815076 sc-eQTL 7.37e-01 -0.0455 0.135 0.788 gdT L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 9.11e-01 -0.0148 0.133 0.788 gdT L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.10e-01 -0.129 0.126 0.788 gdT L2
ENSG00000132849 PATJ 810093 sc-eQTL 6.25e-01 0.0607 0.124 0.788 gdT L2
ENSG00000162604 TM2D1 827076 sc-eQTL 6.19e-01 -0.065 0.13 0.788 gdT L2
ENSG00000162607 USP1 116202 sc-eQTL 2.39e-01 -0.15 0.127 0.788 gdT L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 6.86e-01 -0.0536 0.132 0.788 gdT L2
ENSG00000088035 ALG6 -815076 sc-eQTL 4.62e-01 0.0781 0.106 0.796 intMono L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 9.55e-01 -0.00612 0.108 0.796 intMono L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.49e-01 0.0969 0.103 0.796 intMono L2
ENSG00000162604 TM2D1 827076 sc-eQTL 5.33e-01 -0.0683 0.109 0.796 intMono L2
ENSG00000162607 USP1 116202 sc-eQTL 1.44e-01 -0.169 0.115 0.796 intMono L2
ENSG00000240563 L1TD1 357650 sc-eQTL 6.06e-01 0.044 0.0852 0.796 intMono L2
ENSG00000088035 ALG6 -815076 sc-eQTL 3.80e-01 0.0972 0.11 0.796 ncMono L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.06e-01 0.112 0.109 0.796 ncMono L2
ENSG00000125703 ATG4C -231633 sc-eQTL 3.94e-01 0.0867 0.102 0.796 ncMono L2
ENSG00000162604 TM2D1 827076 sc-eQTL 1.96e-01 -0.142 0.109 0.796 ncMono L2
ENSG00000162607 USP1 116202 sc-eQTL 4.27e-01 -0.0864 0.109 0.796 ncMono L2
ENSG00000240563 L1TD1 357650 sc-eQTL 1.75e-01 -0.105 0.0768 0.796 ncMono L2
ENSG00000088035 ALG6 -815076 sc-eQTL 7.19e-01 0.0426 0.118 0.794 pDC L2
ENSG00000116641 DOCK7 -135887 sc-eQTL 8.18e-01 -0.0279 0.121 0.794 pDC L2
ENSG00000125703 ATG4C -231633 sc-eQTL 2.16e-01 0.134 0.108 0.794 pDC L2
ENSG00000162604 TM2D1 827076 sc-eQTL 5.49e-01 -0.0637 0.106 0.794 pDC L2
ENSG00000162607 USP1 116202 sc-eQTL 1.10e-01 0.198 0.123 0.794 pDC L2
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.79e-01 0.0948 0.107 0.794 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -815076 sc-eQTL 7.75e-01 -0.0328 0.115 0.791 B_Memory LOneK1K
ENSG00000116641 DOCK7 -135887 sc-eQTL 2.19e-01 0.122 0.0992 0.791 B_Memory LOneK1K
ENSG00000125703 ATG4C -231633 sc-eQTL 6.42e-01 0.0375 0.0804 0.791 B_Memory LOneK1K
ENSG00000132849 PATJ 810093 sc-eQTL 3.74e-01 -0.0793 0.089 0.791 B_Memory LOneK1K
ENSG00000162604 TM2D1 827076 sc-eQTL 5.73e-01 -0.0571 0.101 0.791 B_Memory LOneK1K
ENSG00000162607 USP1 116202 sc-eQTL 1.46e-01 0.149 0.102 0.791 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -970873 sc-eQTL 8.05e-01 0.0273 0.11 0.791 B_Memory LOneK1K
ENSG00000088035 ALG6 -815076 sc-eQTL 7.03e-01 -0.0422 0.11 0.791 B_Naive LOneK1K
ENSG00000116641 DOCK7 -135887 sc-eQTL 7.00e-01 0.0398 0.103 0.791 B_Naive LOneK1K
ENSG00000125703 ATG4C -231633 sc-eQTL 5.15e-01 -0.0513 0.0787 0.791 B_Naive LOneK1K
ENSG00000132849 PATJ 810093 sc-eQTL 7.05e-01 0.0357 0.0941 0.791 B_Naive LOneK1K
ENSG00000162604 TM2D1 827076 sc-eQTL 1.10e-01 -0.143 0.0893 0.791 B_Naive LOneK1K
ENSG00000162607 USP1 116202 sc-eQTL 2.46e-01 -0.111 0.0953 0.791 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -970873 sc-eQTL 7.24e-01 0.0395 0.112 0.791 B_Naive LOneK1K
ENSG00000088035 ALG6 -815076 sc-eQTL 2.32e-02 -0.224 0.098 0.791 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.61e-03 0.288 0.0979 0.791 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -231633 sc-eQTL 7.02e-01 0.0264 0.069 0.791 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 827076 sc-eQTL 4.17e-02 -0.146 0.0713 0.791 CD14_Mono LOneK1K
ENSG00000162607 USP1 116202 sc-eQTL 5.55e-01 0.0515 0.0872 0.791 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 357650 sc-eQTL 6.73e-01 0.04 0.0945 0.791 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -815076 sc-eQTL 2.87e-01 0.118 0.11 0.793 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 -135887 sc-eQTL 4.03e-01 0.0914 0.109 0.793 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -231633 sc-eQTL 3.11e-01 0.0942 0.0928 0.793 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 827076 sc-eQTL 1.15e-01 -0.171 0.108 0.793 CD16_Mono LOneK1K
ENSG00000162607 USP1 116202 sc-eQTL 6.36e-02 -0.188 0.101 0.793 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 357650 sc-eQTL 3.89e-01 -0.0597 0.0691 0.793 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -815076 sc-eQTL 6.75e-01 0.0416 0.0992 0.793 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 -135887 sc-eQTL 3.99e-04 0.31 0.0863 0.793 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -231633 sc-eQTL 5.53e-01 0.0527 0.0887 0.793 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 810093 sc-eQTL 3.44e-02 -0.201 0.0946 0.793 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 827076 sc-eQTL 4.93e-01 0.0602 0.0876 0.793 NK_CD56dim LOneK1K
ENSG00000162607 USP1 116202 sc-eQTL 1.95e-01 -0.124 0.0951 0.793 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -970873 sc-eQTL 3.85e-01 0.101 0.116 0.793 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 -135869 eQTL 5.1e-41 0.327 0.0233 0.00871 0.00856 0.222
ENSG00000125703 ATG4C -231633 eQTL 0.00743 0.0519 0.0193 0.0 0.0 0.222
ENSG00000132855 ANGPTL3 -44988 pQTL 4.7e-09 0.199 0.0337 0.0 0.0 0.221
ENSG00000162607 USP1 116202 eQTL 2.25e-12 0.103 0.0145 0.00547 0.00512 0.222

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 -135869 5.08e-06 5.27e-06 6.05e-07 3.1e-06 1.59e-06 1.54e-06 6.29e-06 1.26e-06 4.85e-06 2.76e-06 6.7e-06 3.12e-06 7.56e-06 1.97e-06 1.02e-06 3.84e-06 1.92e-06 3.98e-06 1.45e-06 1.38e-06 2.79e-06 4.9e-06 4.49e-06 1.57e-06 7.48e-06 2.16e-06 2.55e-06 1.74e-06 4.56e-06 4.36e-06 2.64e-06 4.16e-07 6.5e-07 1.53e-06 2.01e-06 1.17e-06 9.76e-07 4.36e-07 8.12e-07 3.88e-07 4.96e-07 5.62e-06 6.14e-07 1.65e-07 8.18e-07 1.34e-06 1.16e-06 6.85e-07 5.96e-07
ENSG00000162607 USP1 116202 5.86e-06 7.41e-06 7.35e-07 3.5e-06 1.66e-06 2.14e-06 8.6e-06 1.5e-06 5.32e-06 3.5e-06 8.58e-06 3.67e-06 9.94e-06 2.19e-06 1.37e-06 4.58e-06 2.96e-06 3.77e-06 1.81e-06 1.79e-06 2.79e-06 6.89e-06 4.81e-06 2.01e-06 9e-06 2.35e-06 3.58e-06 2.2e-06 6.54e-06 5.55e-06 3.68e-06 5.72e-07 8.08e-07 2.3e-06 2.35e-06 1.32e-06 1.01e-06 6.94e-07 9.08e-07 5.79e-07 7.46e-07 7.87e-06 8.49e-07 1.64e-07 7.83e-07 9.91e-07 9.67e-07 6.19e-07 5.88e-07