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Genes within 1Mb (chr1:62541557:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -826018 sc-eQTL 9.56e-01 -0.00535 0.0965 0.793 B L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.18e-01 0.15 0.096 0.793 B L1
ENSG00000125703 ATG4C -242575 sc-eQTL 7.93e-01 -0.0176 0.0671 0.793 B L1
ENSG00000132849 PATJ 799151 sc-eQTL 6.54e-01 -0.0366 0.0814 0.793 B L1
ENSG00000162604 TM2D1 816134 sc-eQTL 9.10e-02 -0.137 0.0808 0.793 B L1
ENSG00000162607 USP1 105260 sc-eQTL 5.30e-01 -0.0582 0.0926 0.793 B L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 8.89e-01 0.0153 0.109 0.793 B L1
ENSG00000088035 ALG6 -826018 sc-eQTL 7.45e-01 0.0286 0.0878 0.793 CD4T L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 5.27e-01 0.0562 0.0888 0.793 CD4T L1
ENSG00000125703 ATG4C -242575 sc-eQTL 8.14e-01 0.0169 0.0717 0.793 CD4T L1
ENSG00000132849 PATJ 799151 sc-eQTL 2.66e-01 0.0648 0.0581 0.793 CD4T L1
ENSG00000162604 TM2D1 816134 sc-eQTL 1.74e-01 0.0961 0.0705 0.793 CD4T L1
ENSG00000162607 USP1 105260 sc-eQTL 6.58e-01 -0.0309 0.0696 0.793 CD4T L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 2.10e-01 -0.114 0.0911 0.793 CD4T L1
ENSG00000088035 ALG6 -826018 sc-eQTL 9.21e-01 0.00966 0.0974 0.793 CD8T L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.69e-01 0.135 0.0982 0.793 CD8T L1
ENSG00000125703 ATG4C -242575 sc-eQTL 2.68e-01 0.104 0.0935 0.793 CD8T L1
ENSG00000132849 PATJ 799151 sc-eQTL 4.23e-02 0.116 0.0566 0.793 CD8T L1
ENSG00000162604 TM2D1 816134 sc-eQTL 4.57e-01 0.0638 0.0857 0.793 CD8T L1
ENSG00000162607 USP1 105260 sc-eQTL 9.13e-01 0.00897 0.0817 0.793 CD8T L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 7.47e-01 -0.0337 0.104 0.793 CD8T L1
ENSG00000088035 ALG6 -826018 sc-eQTL 9.68e-01 0.00397 0.0999 0.793 DC L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 6.95e-01 0.0401 0.102 0.793 DC L1
ENSG00000125703 ATG4C -242575 sc-eQTL 4.04e-02 0.164 0.0793 0.793 DC L1
ENSG00000162604 TM2D1 816134 sc-eQTL 9.78e-01 -0.00258 0.0933 0.793 DC L1
ENSG00000162607 USP1 105260 sc-eQTL 3.47e-01 0.0919 0.0976 0.793 DC L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 4.18e-01 0.079 0.0973 0.793 DC L1
ENSG00000088035 ALG6 -826018 sc-eQTL 7.10e-02 -0.179 0.0989 0.793 Mono L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 8.53e-03 0.252 0.0948 0.793 Mono L1
ENSG00000125703 ATG4C -242575 sc-eQTL 4.98e-01 0.0442 0.0651 0.793 Mono L1
ENSG00000162604 TM2D1 816134 sc-eQTL 1.50e-02 -0.175 0.0713 0.793 Mono L1
ENSG00000162607 USP1 105260 sc-eQTL 8.40e-01 0.0171 0.0845 0.793 Mono L1
ENSG00000240563 L1TD1 346708 sc-eQTL 4.62e-01 -0.0581 0.0788 0.793 Mono L1
ENSG00000088035 ALG6 -826018 sc-eQTL 6.85e-01 0.0387 0.0954 0.794 NK L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.01e-02 0.201 0.0773 0.794 NK L1
ENSG00000125703 ATG4C -242575 sc-eQTL 5.71e-01 0.0479 0.0843 0.794 NK L1
ENSG00000132849 PATJ 799151 sc-eQTL 1.87e-02 -0.193 0.0816 0.794 NK L1
ENSG00000162604 TM2D1 816134 sc-eQTL 3.59e-01 0.0777 0.0845 0.794 NK L1
ENSG00000162607 USP1 105260 sc-eQTL 5.45e-01 -0.0568 0.0936 0.794 NK L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 8.03e-01 0.0284 0.114 0.794 NK L1
ENSG00000088035 ALG6 -826018 sc-eQTL 3.99e-01 0.0789 0.0934 0.793 Other_T L1
ENSG00000116641 DOCK7 -146829 sc-eQTL 5.72e-01 0.054 0.0954 0.793 Other_T L1
ENSG00000125703 ATG4C -242575 sc-eQTL 5.77e-01 0.0462 0.0826 0.793 Other_T L1
ENSG00000132849 PATJ 799151 sc-eQTL 3.12e-01 0.0778 0.0768 0.793 Other_T L1
ENSG00000162604 TM2D1 816134 sc-eQTL 2.00e-01 -0.116 0.0899 0.793 Other_T L1
ENSG00000162607 USP1 105260 sc-eQTL 5.72e-01 -0.0359 0.0635 0.793 Other_T L1
ENSG00000203965 EFCAB7 -981815 sc-eQTL 3.58e-01 0.104 0.113 0.793 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -826018 sc-eQTL 6.15e-01 0.0608 0.121 0.798 B_Activated L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 9.14e-01 0.0122 0.112 0.798 B_Activated L2
ENSG00000125703 ATG4C -242575 sc-eQTL 3.02e-01 0.122 0.118 0.798 B_Activated L2
ENSG00000132849 PATJ 799151 sc-eQTL 3.23e-02 0.214 0.0991 0.798 B_Activated L2
ENSG00000162604 TM2D1 816134 sc-eQTL 1.14e-01 0.201 0.127 0.798 B_Activated L2
ENSG00000162607 USP1 105260 sc-eQTL 1.78e-01 0.168 0.124 0.798 B_Activated L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.33e-01 -0.00919 0.109 0.798 B_Activated L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.22e-01 -0.0914 0.113 0.792 B_Intermediate L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.22e-01 0.0872 0.108 0.792 B_Intermediate L2
ENSG00000125703 ATG4C -242575 sc-eQTL 6.01e-01 0.0482 0.0918 0.792 B_Intermediate L2
ENSG00000132849 PATJ 799151 sc-eQTL 7.42e-01 -0.0328 0.0995 0.792 B_Intermediate L2
ENSG00000162604 TM2D1 816134 sc-eQTL 8.45e-01 -0.0205 0.104 0.792 B_Intermediate L2
ENSG00000162607 USP1 105260 sc-eQTL 7.78e-01 0.0309 0.109 0.792 B_Intermediate L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 6.00e-01 -0.057 0.108 0.792 B_Intermediate L2
ENSG00000088035 ALG6 -826018 sc-eQTL 6.56e-01 0.0494 0.111 0.793 B_Memory L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 2.37e-01 0.123 0.104 0.793 B_Memory L2
ENSG00000125703 ATG4C -242575 sc-eQTL 8.30e-01 -0.0212 0.0989 0.793 B_Memory L2
ENSG00000132849 PATJ 799151 sc-eQTL 4.88e-02 -0.194 0.0978 0.793 B_Memory L2
ENSG00000162604 TM2D1 816134 sc-eQTL 1.25e-01 -0.17 0.11 0.793 B_Memory L2
ENSG00000162607 USP1 105260 sc-eQTL 5.11e-01 0.0751 0.114 0.793 B_Memory L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 4.22e-01 0.0903 0.112 0.793 B_Memory L2
ENSG00000088035 ALG6 -826018 sc-eQTL 6.10e-01 -0.0567 0.111 0.793 B_Naive1 L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 9.70e-01 0.00397 0.106 0.793 B_Naive1 L2
ENSG00000125703 ATG4C -242575 sc-eQTL 7.82e-01 0.0227 0.0819 0.793 B_Naive1 L2
ENSG00000132849 PATJ 799151 sc-eQTL 6.53e-01 0.0474 0.105 0.793 B_Naive1 L2
ENSG00000162604 TM2D1 816134 sc-eQTL 9.13e-01 -0.0106 0.0968 0.793 B_Naive1 L2
ENSG00000162607 USP1 105260 sc-eQTL 2.61e-01 -0.107 0.0953 0.793 B_Naive1 L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.35e-01 -0.00952 0.116 0.793 B_Naive1 L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.23e-01 -0.091 0.113 0.794 B_Naive2 L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.14e-01 0.0894 0.109 0.794 B_Naive2 L2
ENSG00000125703 ATG4C -242575 sc-eQTL 1.43e-01 -0.154 0.105 0.794 B_Naive2 L2
ENSG00000132849 PATJ 799151 sc-eQTL 8.24e-01 -0.024 0.108 0.794 B_Naive2 L2
ENSG00000162604 TM2D1 816134 sc-eQTL 4.57e-03 -0.306 0.107 0.794 B_Naive2 L2
ENSG00000162607 USP1 105260 sc-eQTL 2.26e-01 -0.131 0.108 0.794 B_Naive2 L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 8.51e-01 0.0213 0.113 0.794 B_Naive2 L2
ENSG00000088035 ALG6 -826018 sc-eQTL 3.71e-01 -0.104 0.116 0.793 CD4_CTL L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.58e-01 0.143 0.101 0.793 CD4_CTL L2
ENSG00000125703 ATG4C -242575 sc-eQTL 6.51e-01 0.0474 0.105 0.793 CD4_CTL L2
ENSG00000132849 PATJ 799151 sc-eQTL 1.29e-01 -0.127 0.0834 0.793 CD4_CTL L2
ENSG00000162604 TM2D1 816134 sc-eQTL 7.59e-01 0.033 0.107 0.793 CD4_CTL L2
ENSG00000162607 USP1 105260 sc-eQTL 3.87e-01 0.0923 0.106 0.793 CD4_CTL L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 3.24e-01 -0.105 0.106 0.793 CD4_CTL L2
ENSG00000088035 ALG6 -826018 sc-eQTL 2.36e-01 0.114 0.0962 0.793 CD4_Naive L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 6.93e-01 -0.0376 0.0949 0.793 CD4_Naive L2
ENSG00000125703 ATG4C -242575 sc-eQTL 4.73e-01 0.0602 0.0838 0.793 CD4_Naive L2
ENSG00000132849 PATJ 799151 sc-eQTL 6.47e-01 0.027 0.0589 0.793 CD4_Naive L2
ENSG00000162604 TM2D1 816134 sc-eQTL 9.85e-02 0.14 0.0842 0.793 CD4_Naive L2
ENSG00000162607 USP1 105260 sc-eQTL 4.55e-01 -0.0586 0.0782 0.793 CD4_Naive L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 2.89e-01 -0.108 0.102 0.793 CD4_Naive L2
ENSG00000088035 ALG6 -826018 sc-eQTL 1.21e-01 -0.167 0.107 0.793 CD4_TCM L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 2.75e-01 0.104 0.0952 0.793 CD4_TCM L2
ENSG00000125703 ATG4C -242575 sc-eQTL 9.18e-01 0.0096 0.0929 0.793 CD4_TCM L2
ENSG00000132849 PATJ 799151 sc-eQTL 1.37e-01 0.111 0.0742 0.793 CD4_TCM L2
ENSG00000162604 TM2D1 816134 sc-eQTL 2.22e-01 0.106 0.0867 0.793 CD4_TCM L2
ENSG00000162607 USP1 105260 sc-eQTL 5.62e-01 -0.0521 0.0897 0.793 CD4_TCM L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 7.99e-01 0.0271 0.106 0.793 CD4_TCM L2
ENSG00000088035 ALG6 -826018 sc-eQTL 9.27e-01 -0.0102 0.112 0.793 CD4_TEM L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 8.02e-01 -0.0274 0.109 0.793 CD4_TEM L2
ENSG00000125703 ATG4C -242575 sc-eQTL 2.68e-01 -0.117 0.106 0.793 CD4_TEM L2
ENSG00000132849 PATJ 799151 sc-eQTL 7.56e-01 0.0306 0.0987 0.793 CD4_TEM L2
ENSG00000162604 TM2D1 816134 sc-eQTL 1.62e-01 0.145 0.103 0.793 CD4_TEM L2
ENSG00000162607 USP1 105260 sc-eQTL 2.07e-01 0.131 0.103 0.793 CD4_TEM L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 7.37e-01 -0.038 0.113 0.793 CD4_TEM L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.89e-01 0.0745 0.108 0.793 CD8_CTL L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 9.63e-02 0.17 0.102 0.793 CD8_CTL L2
ENSG00000125703 ATG4C -242575 sc-eQTL 1.55e-02 0.262 0.107 0.793 CD8_CTL L2
ENSG00000132849 PATJ 799151 sc-eQTL 1.12e-01 0.164 0.102 0.793 CD8_CTL L2
ENSG00000162604 TM2D1 816134 sc-eQTL 7.42e-01 0.0311 0.0945 0.793 CD8_CTL L2
ENSG00000162607 USP1 105260 sc-eQTL 5.90e-01 -0.0546 0.101 0.793 CD8_CTL L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 5.53e-01 -0.0687 0.116 0.793 CD8_CTL L2
ENSG00000088035 ALG6 -826018 sc-eQTL 9.86e-01 -0.00182 0.105 0.793 CD8_Naive L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.19e-01 -0.169 0.108 0.793 CD8_Naive L2
ENSG00000125703 ATG4C -242575 sc-eQTL 6.26e-01 0.0507 0.104 0.793 CD8_Naive L2
ENSG00000132849 PATJ 799151 sc-eQTL 7.55e-02 0.141 0.0789 0.793 CD8_Naive L2
ENSG00000162604 TM2D1 816134 sc-eQTL 7.30e-01 0.0336 0.0971 0.793 CD8_Naive L2
ENSG00000162607 USP1 105260 sc-eQTL 8.35e-01 0.0186 0.089 0.793 CD8_Naive L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.19e-01 0.0101 0.0993 0.793 CD8_Naive L2
ENSG00000088035 ALG6 -826018 sc-eQTL 6.99e-01 0.0448 0.116 0.792 CD8_TCM L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 3.68e-01 0.102 0.113 0.792 CD8_TCM L2
ENSG00000125703 ATG4C -242575 sc-eQTL 4.88e-01 -0.0803 0.115 0.792 CD8_TCM L2
ENSG00000132849 PATJ 799151 sc-eQTL 5.97e-01 -0.0562 0.106 0.792 CD8_TCM L2
ENSG00000162604 TM2D1 816134 sc-eQTL 3.55e-02 0.226 0.107 0.792 CD8_TCM L2
ENSG00000162607 USP1 105260 sc-eQTL 6.06e-01 0.0557 0.108 0.792 CD8_TCM L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 8.90e-01 -0.0159 0.114 0.792 CD8_TCM L2
ENSG00000088035 ALG6 -826018 sc-eQTL 1.11e-01 0.187 0.117 0.795 CD8_TEM L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 3.85e-01 -0.0991 0.114 0.795 CD8_TEM L2
ENSG00000125703 ATG4C -242575 sc-eQTL 6.12e-01 0.0557 0.11 0.795 CD8_TEM L2
ENSG00000132849 PATJ 799151 sc-eQTL 2.36e-01 0.132 0.111 0.795 CD8_TEM L2
ENSG00000162604 TM2D1 816134 sc-eQTL 9.70e-01 0.00428 0.113 0.795 CD8_TEM L2
ENSG00000162607 USP1 105260 sc-eQTL 3.25e-01 0.111 0.113 0.795 CD8_TEM L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 3.58e-01 0.106 0.115 0.795 CD8_TEM L2
ENSG00000088035 ALG6 -826018 sc-eQTL 9.72e-01 0.00368 0.105 0.792 MAIT L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 5.10e-01 0.0665 0.101 0.792 MAIT L2
ENSG00000125703 ATG4C -242575 sc-eQTL 4.24e-01 0.0852 0.106 0.792 MAIT L2
ENSG00000132849 PATJ 799151 sc-eQTL 3.96e-01 0.0765 0.0899 0.792 MAIT L2
ENSG00000162604 TM2D1 816134 sc-eQTL 4.91e-01 -0.0705 0.102 0.792 MAIT L2
ENSG00000162607 USP1 105260 sc-eQTL 8.52e-01 -0.0197 0.106 0.792 MAIT L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 2.80e-01 0.119 0.109 0.792 MAIT L2
ENSG00000088035 ALG6 -826018 sc-eQTL 9.52e-01 0.00673 0.111 0.796 NK_CD56bright L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 3.82e-01 -0.084 0.0959 0.796 NK_CD56bright L2
ENSG00000125703 ATG4C -242575 sc-eQTL 4.35e-01 -0.0838 0.107 0.796 NK_CD56bright L2
ENSG00000132849 PATJ 799151 sc-eQTL 8.84e-02 -0.179 0.104 0.796 NK_CD56bright L2
ENSG00000162604 TM2D1 816134 sc-eQTL 6.80e-01 0.0443 0.107 0.796 NK_CD56bright L2
ENSG00000162607 USP1 105260 sc-eQTL 3.69e-01 0.103 0.115 0.796 NK_CD56bright L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 1.16e-01 -0.173 0.11 0.796 NK_CD56bright L2
ENSG00000088035 ALG6 -826018 sc-eQTL 7.43e-01 0.0354 0.108 0.795 NK_CD56dim L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.30e-02 0.232 0.0925 0.795 NK_CD56dim L2
ENSG00000125703 ATG4C -242575 sc-eQTL 5.39e-01 -0.0586 0.0953 0.795 NK_CD56dim L2
ENSG00000132849 PATJ 799151 sc-eQTL 1.23e-03 -0.33 0.101 0.795 NK_CD56dim L2
ENSG00000162604 TM2D1 816134 sc-eQTL 7.07e-01 0.037 0.0982 0.795 NK_CD56dim L2
ENSG00000162607 USP1 105260 sc-eQTL 9.14e-01 0.0113 0.105 0.795 NK_CD56dim L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 5.60e-01 0.0683 0.117 0.795 NK_CD56dim L2
ENSG00000088035 ALG6 -826018 sc-eQTL 7.71e-01 -0.0346 0.119 0.792 NK_HLA L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 3.96e-01 0.077 0.0906 0.792 NK_HLA L2
ENSG00000125703 ATG4C -242575 sc-eQTL 5.42e-01 0.0644 0.105 0.792 NK_HLA L2
ENSG00000132849 PATJ 799151 sc-eQTL 3.07e-01 -0.1 0.0977 0.792 NK_HLA L2
ENSG00000162604 TM2D1 816134 sc-eQTL 6.43e-01 0.0516 0.111 0.792 NK_HLA L2
ENSG00000162607 USP1 105260 sc-eQTL 5.37e-01 0.0717 0.116 0.792 NK_HLA L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 4.34e-01 0.0826 0.105 0.792 NK_HLA L2
ENSG00000088035 ALG6 -826018 sc-eQTL 3.90e-01 0.0899 0.104 0.795 NK_cytokine L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.43e-04 0.336 0.094 0.795 NK_cytokine L2
ENSG00000125703 ATG4C -242575 sc-eQTL 2.25e-01 0.12 0.0987 0.795 NK_cytokine L2
ENSG00000132849 PATJ 799151 sc-eQTL 5.30e-01 0.0657 0.104 0.795 NK_cytokine L2
ENSG00000162604 TM2D1 816134 sc-eQTL 4.74e-01 0.0731 0.102 0.795 NK_cytokine L2
ENSG00000162607 USP1 105260 sc-eQTL 6.71e-02 -0.197 0.107 0.795 NK_cytokine L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 1.56e-01 0.155 0.109 0.795 NK_cytokine L2
ENSG00000088035 ALG6 -826018 sc-eQTL 6.17e-01 0.0667 0.133 0.77 PB L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 7.47e-01 0.0459 0.142 0.77 PB L2
ENSG00000125703 ATG4C -242575 sc-eQTL 2.51e-01 -0.142 0.123 0.77 PB L2
ENSG00000132849 PATJ 799151 sc-eQTL 2.37e-01 -0.152 0.128 0.77 PB L2
ENSG00000162604 TM2D1 816134 sc-eQTL 3.71e-01 -0.112 0.125 0.77 PB L2
ENSG00000162607 USP1 105260 sc-eQTL 8.05e-01 0.0304 0.123 0.77 PB L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.14e-01 0.0148 0.136 0.77 PB L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.62e-01 0.0769 0.104 0.793 Pro_T L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 1.61e-01 0.147 0.104 0.793 Pro_T L2
ENSG00000125703 ATG4C -242575 sc-eQTL 3.17e-01 -0.0918 0.0916 0.793 Pro_T L2
ENSG00000132849 PATJ 799151 sc-eQTL 8.42e-01 0.02 0.1 0.793 Pro_T L2
ENSG00000162604 TM2D1 816134 sc-eQTL 9.70e-01 -0.00426 0.112 0.793 Pro_T L2
ENSG00000162607 USP1 105260 sc-eQTL 4.12e-01 0.052 0.0632 0.793 Pro_T L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.20e-01 0.0108 0.107 0.793 Pro_T L2
ENSG00000088035 ALG6 -826018 sc-eQTL 3.07e-01 0.115 0.112 0.793 Treg L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 3.04e-01 0.106 0.103 0.793 Treg L2
ENSG00000125703 ATG4C -242575 sc-eQTL 3.16e-01 0.106 0.105 0.793 Treg L2
ENSG00000132849 PATJ 799151 sc-eQTL 7.84e-01 0.0269 0.098 0.793 Treg L2
ENSG00000162604 TM2D1 816134 sc-eQTL 8.16e-01 -0.0251 0.108 0.793 Treg L2
ENSG00000162607 USP1 105260 sc-eQTL 8.81e-01 0.0161 0.107 0.793 Treg L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 3.69e-01 -0.0952 0.106 0.793 Treg L2
ENSG00000088035 ALG6 -826018 sc-eQTL 3.45e-01 -0.104 0.11 0.8 cDC L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 2.73e-01 0.118 0.107 0.8 cDC L2
ENSG00000125703 ATG4C -242575 sc-eQTL 3.29e-01 0.0913 0.0933 0.8 cDC L2
ENSG00000162604 TM2D1 816134 sc-eQTL 6.73e-01 0.0494 0.117 0.8 cDC L2
ENSG00000162607 USP1 105260 sc-eQTL 6.31e-01 -0.0508 0.106 0.8 cDC L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 8.01e-01 -0.024 0.0953 0.8 cDC L2
ENSG00000088035 ALG6 -826018 sc-eQTL 2.51e-01 -0.115 0.1 0.793 cMono_IL1B L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 7.35e-03 0.282 0.104 0.793 cMono_IL1B L2
ENSG00000125703 ATG4C -242575 sc-eQTL 7.54e-01 0.0234 0.0744 0.793 cMono_IL1B L2
ENSG00000162604 TM2D1 816134 sc-eQTL 3.91e-01 -0.0659 0.0767 0.793 cMono_IL1B L2
ENSG00000162607 USP1 105260 sc-eQTL 5.88e-01 -0.0505 0.093 0.793 cMono_IL1B L2
ENSG00000240563 L1TD1 346708 sc-eQTL 9.92e-01 0.000898 0.0935 0.793 cMono_IL1B L2
ENSG00000088035 ALG6 -826018 sc-eQTL 2.83e-02 -0.247 0.112 0.793 cMono_S100A L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.37e-02 0.211 0.104 0.793 cMono_S100A L2
ENSG00000125703 ATG4C -242575 sc-eQTL 9.48e-01 -0.00599 0.091 0.793 cMono_S100A L2
ENSG00000162604 TM2D1 816134 sc-eQTL 7.36e-02 -0.166 0.0922 0.793 cMono_S100A L2
ENSG00000162607 USP1 105260 sc-eQTL 3.25e-01 0.104 0.105 0.793 cMono_S100A L2
ENSG00000240563 L1TD1 346708 sc-eQTL 9.67e-01 0.00359 0.0879 0.793 cMono_S100A L2
ENSG00000088035 ALG6 -826018 sc-eQTL 7.85e-01 -0.0369 0.135 0.791 gdT L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 7.92e-01 -0.0351 0.133 0.791 gdT L2
ENSG00000125703 ATG4C -242575 sc-eQTL 2.50e-01 -0.146 0.126 0.791 gdT L2
ENSG00000132849 PATJ 799151 sc-eQTL 7.89e-01 0.0332 0.124 0.791 gdT L2
ENSG00000162604 TM2D1 816134 sc-eQTL 5.43e-01 -0.0793 0.13 0.791 gdT L2
ENSG00000162607 USP1 105260 sc-eQTL 2.42e-01 -0.149 0.127 0.791 gdT L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 6.70e-01 -0.0566 0.132 0.791 gdT L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.69e-01 0.0768 0.106 0.798 intMono L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 8.91e-01 -0.0149 0.108 0.798 intMono L2
ENSG00000125703 ATG4C -242575 sc-eQTL 3.36e-01 0.0995 0.103 0.798 intMono L2
ENSG00000162604 TM2D1 816134 sc-eQTL 5.22e-01 -0.0701 0.109 0.798 intMono L2
ENSG00000162607 USP1 105260 sc-eQTL 1.21e-01 -0.179 0.115 0.798 intMono L2
ENSG00000240563 L1TD1 346708 sc-eQTL 6.15e-01 0.0429 0.0851 0.798 intMono L2
ENSG00000088035 ALG6 -826018 sc-eQTL 4.95e-01 0.0755 0.111 0.799 ncMono L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 2.50e-01 0.125 0.109 0.799 ncMono L2
ENSG00000125703 ATG4C -242575 sc-eQTL 4.62e-01 0.0749 0.102 0.799 ncMono L2
ENSG00000162604 TM2D1 816134 sc-eQTL 2.23e-01 -0.134 0.109 0.799 ncMono L2
ENSG00000162607 USP1 105260 sc-eQTL 4.34e-01 -0.0852 0.109 0.799 ncMono L2
ENSG00000240563 L1TD1 346708 sc-eQTL 1.55e-01 -0.11 0.0768 0.799 ncMono L2
ENSG00000088035 ALG6 -826018 sc-eQTL 5.59e-01 0.0689 0.118 0.797 pDC L2
ENSG00000116641 DOCK7 -146829 sc-eQTL 8.62e-01 -0.021 0.121 0.797 pDC L2
ENSG00000125703 ATG4C -242575 sc-eQTL 2.05e-01 0.137 0.108 0.797 pDC L2
ENSG00000162604 TM2D1 816134 sc-eQTL 5.66e-01 -0.0608 0.106 0.797 pDC L2
ENSG00000162607 USP1 105260 sc-eQTL 6.36e-02 0.229 0.122 0.797 pDC L2
ENSG00000203965 EFCAB7 -981815 sc-eQTL 4.51e-01 0.081 0.107 0.797 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -826018 sc-eQTL 7.10e-01 -0.0428 0.115 0.793 B_Memory LOneK1K
ENSG00000116641 DOCK7 -146829 sc-eQTL 2.16e-01 0.123 0.0992 0.793 B_Memory LOneK1K
ENSG00000125703 ATG4C -242575 sc-eQTL 6.31e-01 0.0387 0.0804 0.793 B_Memory LOneK1K
ENSG00000132849 PATJ 799151 sc-eQTL 4.15e-01 -0.0726 0.089 0.793 B_Memory LOneK1K
ENSG00000162604 TM2D1 816134 sc-eQTL 7.00e-01 -0.039 0.101 0.793 B_Memory LOneK1K
ENSG00000162607 USP1 105260 sc-eQTL 1.53e-01 0.146 0.102 0.793 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -981815 sc-eQTL 9.42e-01 0.00806 0.11 0.793 B_Memory LOneK1K
ENSG00000088035 ALG6 -826018 sc-eQTL 6.56e-01 -0.0493 0.111 0.793 B_Naive LOneK1K
ENSG00000116641 DOCK7 -146829 sc-eQTL 7.80e-01 0.0289 0.103 0.793 B_Naive LOneK1K
ENSG00000125703 ATG4C -242575 sc-eQTL 5.42e-01 -0.0481 0.0788 0.793 B_Naive LOneK1K
ENSG00000132849 PATJ 799151 sc-eQTL 7.32e-01 0.0324 0.0943 0.793 B_Naive LOneK1K
ENSG00000162604 TM2D1 816134 sc-eQTL 7.92e-02 -0.158 0.0893 0.793 B_Naive LOneK1K
ENSG00000162607 USP1 105260 sc-eQTL 2.42e-01 -0.112 0.0954 0.793 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -981815 sc-eQTL 6.82e-01 0.0459 0.112 0.793 B_Naive LOneK1K
ENSG00000088035 ALG6 -826018 sc-eQTL 2.22e-02 -0.226 0.0981 0.793 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.04e-03 0.285 0.0981 0.793 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -242575 sc-eQTL 7.25e-01 0.0244 0.0691 0.793 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 816134 sc-eQTL 3.30e-02 -0.153 0.0713 0.793 CD14_Mono LOneK1K
ENSG00000162607 USP1 105260 sc-eQTL 7.39e-01 0.0291 0.0874 0.793 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 346708 sc-eQTL 7.62e-01 0.0287 0.0948 0.793 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -826018 sc-eQTL 3.24e-01 0.109 0.11 0.795 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.02e-01 0.0916 0.109 0.795 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -242575 sc-eQTL 3.17e-01 0.0933 0.093 0.795 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 816134 sc-eQTL 1.27e-01 -0.166 0.108 0.795 CD16_Mono LOneK1K
ENSG00000162607 USP1 105260 sc-eQTL 5.84e-02 -0.192 0.101 0.795 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 346708 sc-eQTL 3.64e-01 -0.0629 0.0692 0.795 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -826018 sc-eQTL 5.98e-01 0.0525 0.0994 0.795 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 -146829 sc-eQTL 4.99e-04 0.306 0.0866 0.795 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -242575 sc-eQTL 4.98e-01 0.0604 0.0889 0.795 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 799151 sc-eQTL 3.77e-02 -0.198 0.0949 0.795 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 816134 sc-eQTL 4.73e-01 0.0632 0.0878 0.795 NK_CD56dim LOneK1K
ENSG00000162607 USP1 105260 sc-eQTL 2.12e-01 -0.12 0.0954 0.795 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -981815 sc-eQTL 3.24e-01 0.115 0.116 0.795 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 -146811 eQTL 5.29e-41 0.327 0.0233 0.00836 0.0085 0.222
ENSG00000125703 ATG4C -242575 eQTL 0.00729 0.052 0.0193 0.0 0.0 0.222
ENSG00000132855 ANGPTL3 -55930 pQTL 4.67e-09 0.199 0.0337 0.0 0.0 0.221
ENSG00000162607 USP1 105260 eQTL 2.22e-12 0.103 0.0145 0.00554 0.00519 0.222

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 -146811 2.69e-06 2.5e-06 2.72e-07 1.71e-06 4.38e-07 8.24e-07 1.82e-06 6.32e-07 1.8e-06 7.73e-07 2.39e-06 1.37e-06 3.47e-06 1.29e-06 6.04e-07 1.53e-06 1.1e-06 2.24e-06 7.13e-07 1.15e-06 9.18e-07 2.76e-06 2.23e-06 1.07e-06 3.44e-06 1.33e-06 1.17e-06 1.45e-06 1.98e-06 1.79e-06 1.53e-06 2.2e-07 4.53e-07 1.22e-06 9.17e-07 9.73e-07 7.88e-07 3.9e-07 9.58e-07 3.54e-07 1.51e-07 3.37e-06 4.14e-07 1.89e-07 3.29e-07 3.21e-07 5.48e-07 2.22e-07 2.14e-07
ENSG00000162607 USP1 105260 4.33e-06 4.65e-06 7.62e-07 2.46e-06 1.1e-06 1.19e-06 3.23e-06 1.01e-06 3.56e-06 1.7e-06 4.16e-06 2.94e-06 6.78e-06 1.96e-06 1.2e-06 2.63e-06 2.06e-06 2.9e-06 1.36e-06 9.5e-07 2.28e-06 4.27e-06 3.47e-06 1.56e-06 5.16e-06 1.33e-06 2e-06 1.47e-06 4.3e-06 4.14e-06 2.01e-06 5.93e-07 7.93e-07 1.6e-06 1.92e-06 9.04e-07 9.37e-07 4.91e-07 1.06e-06 3.42e-07 4.96e-07 5.26e-06 4.46e-07 1.63e-07 3.43e-07 3.93e-07 7.92e-07 3.35e-07 3.21e-07