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Genes within 1Mb (chr1:62394639:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -972936 sc-eQTL 8.98e-02 -0.261 0.153 0.923 B L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.13e-01 0.078 0.154 0.923 B L1
ENSG00000125703 ATG4C -389493 sc-eQTL 5.68e-01 0.0612 0.107 0.923 B L1
ENSG00000132849 PATJ 652233 sc-eQTL 8.51e-01 -0.0245 0.13 0.923 B L1
ENSG00000162604 TM2D1 669216 sc-eQTL 8.87e-01 -0.0184 0.13 0.923 B L1
ENSG00000162607 USP1 -41658 sc-eQTL 1.46e-01 0.215 0.147 0.923 B L1
ENSG00000088035 ALG6 -972936 sc-eQTL 4.24e-01 -0.114 0.142 0.923 CD4T L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.55e-01 -0.0851 0.144 0.923 CD4T L1
ENSG00000125703 ATG4C -389493 sc-eQTL 2.72e-01 0.128 0.116 0.923 CD4T L1
ENSG00000132849 PATJ 652233 sc-eQTL 1.93e-03 0.29 0.0923 0.923 CD4T L1
ENSG00000162604 TM2D1 669216 sc-eQTL 3.74e-01 0.102 0.115 0.923 CD4T L1
ENSG00000162607 USP1 -41658 sc-eQTL 8.02e-01 -0.0284 0.113 0.923 CD4T L1
ENSG00000088035 ALG6 -972936 sc-eQTL 4.47e-01 0.117 0.154 0.923 CD8T L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.63e-01 0.0681 0.156 0.923 CD8T L1
ENSG00000125703 ATG4C -389493 sc-eQTL 6.07e-01 0.0763 0.148 0.923 CD8T L1
ENSG00000132849 PATJ 652233 sc-eQTL 7.13e-01 -0.0333 0.0904 0.923 CD8T L1
ENSG00000162604 TM2D1 669216 sc-eQTL 7.12e-01 0.0502 0.136 0.923 CD8T L1
ENSG00000162607 USP1 -41658 sc-eQTL 1.63e-01 -0.18 0.129 0.923 CD8T L1
ENSG00000088035 ALG6 -972936 sc-eQTL 3.47e-01 0.15 0.159 0.921 DC L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.26e-01 0.104 0.164 0.921 DC L1
ENSG00000125703 ATG4C -389493 sc-eQTL 7.47e-02 -0.228 0.127 0.921 DC L1
ENSG00000162604 TM2D1 669216 sc-eQTL 4.35e-01 -0.117 0.149 0.921 DC L1
ENSG00000162607 USP1 -41658 sc-eQTL 7.16e-01 -0.0569 0.156 0.921 DC L1
ENSG00000088035 ALG6 -972936 sc-eQTL 5.34e-01 -0.0997 0.16 0.923 Mono L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 2.75e-01 -0.169 0.154 0.923 Mono L1
ENSG00000125703 ATG4C -389493 sc-eQTL 4.48e-01 -0.0794 0.104 0.923 Mono L1
ENSG00000162604 TM2D1 669216 sc-eQTL 5.22e-01 0.0745 0.116 0.923 Mono L1
ENSG00000162607 USP1 -41658 sc-eQTL 9.70e-01 0.00506 0.136 0.923 Mono L1
ENSG00000240563 L1TD1 199790 sc-eQTL 6.05e-01 -0.0656 0.127 0.923 Mono L1
ENSG00000088035 ALG6 -972936 sc-eQTL 2.10e-01 -0.19 0.151 0.923 NK L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.74e-01 -0.169 0.124 0.923 NK L1
ENSG00000125703 ATG4C -389493 sc-eQTL 5.30e-01 -0.0844 0.134 0.923 NK L1
ENSG00000132849 PATJ 652233 sc-eQTL 6.76e-01 0.0549 0.131 0.923 NK L1
ENSG00000162604 TM2D1 669216 sc-eQTL 1.96e-01 0.174 0.134 0.923 NK L1
ENSG00000162607 USP1 -41658 sc-eQTL 8.19e-03 0.391 0.146 0.923 NK L1
ENSG00000088035 ALG6 -972936 sc-eQTL 7.19e-01 0.0541 0.15 0.923 Other_T L1
ENSG00000116641 DOCK7 -293747 sc-eQTL 8.43e-01 0.0305 0.154 0.923 Other_T L1
ENSG00000125703 ATG4C -389493 sc-eQTL 4.19e-01 0.107 0.133 0.923 Other_T L1
ENSG00000132849 PATJ 652233 sc-eQTL 9.70e-01 0.00471 0.124 0.923 Other_T L1
ENSG00000162604 TM2D1 669216 sc-eQTL 9.59e-01 0.00748 0.145 0.923 Other_T L1
ENSG00000162607 USP1 -41658 sc-eQTL 3.48e-01 0.0959 0.102 0.923 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -972936 sc-eQTL 5.59e-01 -0.114 0.194 0.926 B_Activated L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.07e-01 -0.291 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C -389493 sc-eQTL 8.00e-01 0.0483 0.19 0.926 B_Activated L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.47e-01 -0.0523 0.162 0.926 B_Activated L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.20e-03 -0.656 0.199 0.926 B_Activated L2
ENSG00000162607 USP1 -41658 sc-eQTL 1.28e-01 0.306 0.2 0.926 B_Activated L2
ENSG00000088035 ALG6 -972936 sc-eQTL 1.16e-02 -0.458 0.18 0.925 B_Intermediate L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 8.49e-01 -0.0332 0.174 0.925 B_Intermediate L2
ENSG00000125703 ATG4C -389493 sc-eQTL 6.41e-01 -0.0689 0.148 0.925 B_Intermediate L2
ENSG00000132849 PATJ 652233 sc-eQTL 8.10e-01 0.0384 0.16 0.925 B_Intermediate L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.75e-01 -0.048 0.168 0.925 B_Intermediate L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.27e-01 0.111 0.175 0.925 B_Intermediate L2
ENSG00000088035 ALG6 -972936 sc-eQTL 8.08e-01 0.0434 0.179 0.922 B_Memory L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 8.95e-01 0.0221 0.168 0.922 B_Memory L2
ENSG00000125703 ATG4C -389493 sc-eQTL 3.16e-01 0.16 0.159 0.922 B_Memory L2
ENSG00000132849 PATJ 652233 sc-eQTL 9.09e-01 -0.0181 0.159 0.922 B_Memory L2
ENSG00000162604 TM2D1 669216 sc-eQTL 5.60e-02 0.341 0.177 0.922 B_Memory L2
ENSG00000162607 USP1 -41658 sc-eQTL 4.58e-01 0.137 0.184 0.922 B_Memory L2
ENSG00000088035 ALG6 -972936 sc-eQTL 5.37e-01 -0.11 0.178 0.923 B_Naive1 L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.11e-01 0.271 0.17 0.923 B_Naive1 L2
ENSG00000125703 ATG4C -389493 sc-eQTL 6.42e-02 0.243 0.13 0.923 B_Naive1 L2
ENSG00000132849 PATJ 652233 sc-eQTL 4.92e-01 -0.116 0.169 0.923 B_Naive1 L2
ENSG00000162604 TM2D1 669216 sc-eQTL 9.27e-01 -0.0143 0.155 0.923 B_Naive1 L2
ENSG00000162607 USP1 -41658 sc-eQTL 8.23e-01 0.0344 0.153 0.923 B_Naive1 L2
ENSG00000088035 ALG6 -972936 sc-eQTL 4.67e-01 -0.133 0.183 0.923 B_Naive2 L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 9.13e-01 -0.0192 0.176 0.923 B_Naive2 L2
ENSG00000125703 ATG4C -389493 sc-eQTL 3.63e-01 -0.154 0.169 0.923 B_Naive2 L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.40e-01 0.0575 0.173 0.923 B_Naive2 L2
ENSG00000162604 TM2D1 669216 sc-eQTL 6.94e-01 -0.069 0.175 0.923 B_Naive2 L2
ENSG00000162607 USP1 -41658 sc-eQTL 6.05e-02 0.327 0.173 0.923 B_Naive2 L2
ENSG00000088035 ALG6 -972936 sc-eQTL 7.93e-02 -0.325 0.184 0.918 CD4_CTL L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 4.88e-01 -0.113 0.162 0.918 CD4_CTL L2
ENSG00000125703 ATG4C -389493 sc-eQTL 3.18e-01 0.168 0.168 0.918 CD4_CTL L2
ENSG00000132849 PATJ 652233 sc-eQTL 3.38e-01 -0.129 0.134 0.918 CD4_CTL L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.77e-03 0.532 0.168 0.918 CD4_CTL L2
ENSG00000162607 USP1 -41658 sc-eQTL 8.00e-01 0.0433 0.171 0.918 CD4_CTL L2
ENSG00000088035 ALG6 -972936 sc-eQTL 7.34e-01 0.0532 0.156 0.923 CD4_Naive L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.62e-01 -0.0672 0.153 0.923 CD4_Naive L2
ENSG00000125703 ATG4C -389493 sc-eQTL 5.57e-01 0.0797 0.136 0.923 CD4_Naive L2
ENSG00000132849 PATJ 652233 sc-eQTL 3.30e-04 0.337 0.0924 0.923 CD4_Naive L2
ENSG00000162604 TM2D1 669216 sc-eQTL 4.97e-01 0.0932 0.137 0.923 CD4_Naive L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.83e-01 -0.0697 0.127 0.923 CD4_Naive L2
ENSG00000088035 ALG6 -972936 sc-eQTL 2.45e-01 -0.203 0.174 0.923 CD4_TCM L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.12e-01 -0.0786 0.155 0.923 CD4_TCM L2
ENSG00000125703 ATG4C -389493 sc-eQTL 8.83e-01 -0.0222 0.151 0.923 CD4_TCM L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.97e-01 -0.0312 0.121 0.923 CD4_TCM L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.28e-01 0.049 0.141 0.923 CD4_TCM L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.18e-01 0.0941 0.145 0.923 CD4_TCM L2
ENSG00000088035 ALG6 -972936 sc-eQTL 8.58e-01 -0.0318 0.177 0.923 CD4_TEM L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 3.76e-01 -0.153 0.172 0.923 CD4_TEM L2
ENSG00000125703 ATG4C -389493 sc-eQTL 2.49e-01 0.193 0.167 0.923 CD4_TEM L2
ENSG00000132849 PATJ 652233 sc-eQTL 2.90e-02 0.34 0.155 0.923 CD4_TEM L2
ENSG00000162604 TM2D1 669216 sc-eQTL 2.80e-01 -0.178 0.164 0.923 CD4_TEM L2
ENSG00000162607 USP1 -41658 sc-eQTL 9.12e-01 0.0181 0.164 0.923 CD4_TEM L2
ENSG00000088035 ALG6 -972936 sc-eQTL 5.66e-01 0.0975 0.17 0.923 CD8_CTL L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.53e-01 -0.0724 0.161 0.923 CD8_CTL L2
ENSG00000125703 ATG4C -389493 sc-eQTL 9.94e-01 -0.00128 0.172 0.923 CD8_CTL L2
ENSG00000132849 PATJ 652233 sc-eQTL 9.03e-01 0.0198 0.162 0.923 CD8_CTL L2
ENSG00000162604 TM2D1 669216 sc-eQTL 5.28e-01 0.0941 0.149 0.923 CD8_CTL L2
ENSG00000162607 USP1 -41658 sc-eQTL 1.96e-01 -0.206 0.159 0.923 CD8_CTL L2
ENSG00000088035 ALG6 -972936 sc-eQTL 9.28e-01 -0.0153 0.17 0.923 CD8_Naive L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.98e-02 -0.406 0.173 0.923 CD8_Naive L2
ENSG00000125703 ATG4C -389493 sc-eQTL 4.36e-01 0.131 0.168 0.923 CD8_Naive L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.72e-01 -0.0374 0.129 0.923 CD8_Naive L2
ENSG00000162604 TM2D1 669216 sc-eQTL 4.69e-01 0.114 0.157 0.923 CD8_Naive L2
ENSG00000162607 USP1 -41658 sc-eQTL 1.26e-01 -0.22 0.143 0.923 CD8_Naive L2
ENSG00000088035 ALG6 -972936 sc-eQTL 2.58e-01 0.2 0.176 0.917 CD8_TCM L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.18e-01 0.112 0.172 0.917 CD8_TCM L2
ENSG00000125703 ATG4C -389493 sc-eQTL 7.55e-01 -0.0551 0.176 0.917 CD8_TCM L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.53e-01 -0.0512 0.162 0.917 CD8_TCM L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.31e-01 -0.249 0.164 0.917 CD8_TCM L2
ENSG00000162607 USP1 -41658 sc-eQTL 3.87e-01 0.143 0.165 0.917 CD8_TCM L2
ENSG00000088035 ALG6 -972936 sc-eQTL 7.34e-01 -0.0631 0.186 0.927 CD8_TEM L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.27e-01 0.274 0.179 0.927 CD8_TEM L2
ENSG00000125703 ATG4C -389493 sc-eQTL 9.85e-01 0.00329 0.173 0.927 CD8_TEM L2
ENSG00000132849 PATJ 652233 sc-eQTL 8.67e-01 -0.0293 0.175 0.927 CD8_TEM L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.42e-01 -0.0588 0.178 0.927 CD8_TEM L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.11e-03 -0.496 0.175 0.927 CD8_TEM L2
ENSG00000088035 ALG6 -972936 sc-eQTL 5.44e-01 0.102 0.167 0.922 MAIT L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 9.43e-01 -0.0115 0.161 0.922 MAIT L2
ENSG00000125703 ATG4C -389493 sc-eQTL 1.83e-01 0.225 0.169 0.922 MAIT L2
ENSG00000132849 PATJ 652233 sc-eQTL 9.39e-01 -0.0111 0.143 0.922 MAIT L2
ENSG00000162604 TM2D1 669216 sc-eQTL 2.99e-01 -0.169 0.162 0.922 MAIT L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.63e-01 0.0974 0.168 0.922 MAIT L2
ENSG00000088035 ALG6 -972936 sc-eQTL 4.49e-03 -0.491 0.171 0.92 NK_CD56bright L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 7.48e-01 0.0486 0.151 0.92 NK_CD56bright L2
ENSG00000125703 ATG4C -389493 sc-eQTL 5.26e-01 0.107 0.169 0.92 NK_CD56bright L2
ENSG00000132849 PATJ 652233 sc-eQTL 5.53e-01 0.0981 0.165 0.92 NK_CD56bright L2
ENSG00000162604 TM2D1 669216 sc-eQTL 9.87e-01 0.0027 0.168 0.92 NK_CD56bright L2
ENSG00000162607 USP1 -41658 sc-eQTL 9.27e-01 0.0167 0.181 0.92 NK_CD56bright L2
ENSG00000088035 ALG6 -972936 sc-eQTL 2.79e-01 -0.184 0.17 0.922 NK_CD56dim L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.01e-01 -0.243 0.147 0.922 NK_CD56dim L2
ENSG00000125703 ATG4C -389493 sc-eQTL 1.58e-01 -0.212 0.15 0.922 NK_CD56dim L2
ENSG00000132849 PATJ 652233 sc-eQTL 3.47e-01 0.153 0.163 0.922 NK_CD56dim L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.45e-01 0.226 0.154 0.922 NK_CD56dim L2
ENSG00000162607 USP1 -41658 sc-eQTL 5.14e-03 0.461 0.163 0.922 NK_CD56dim L2
ENSG00000088035 ALG6 -972936 sc-eQTL 6.08e-01 0.1 0.194 0.925 NK_HLA L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.57e-01 0.0661 0.149 0.925 NK_HLA L2
ENSG00000125703 ATG4C -389493 sc-eQTL 2.15e-01 0.215 0.172 0.925 NK_HLA L2
ENSG00000132849 PATJ 652233 sc-eQTL 6.42e-01 -0.0748 0.16 0.925 NK_HLA L2
ENSG00000162604 TM2D1 669216 sc-eQTL 5.67e-01 -0.104 0.182 0.925 NK_HLA L2
ENSG00000162607 USP1 -41658 sc-eQTL 8.93e-02 0.322 0.189 0.925 NK_HLA L2
ENSG00000088035 ALG6 -972936 sc-eQTL 5.43e-01 0.102 0.168 0.922 NK_cytokine L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.75e-03 -0.427 0.153 0.922 NK_cytokine L2
ENSG00000125703 ATG4C -389493 sc-eQTL 8.28e-01 0.0346 0.159 0.922 NK_cytokine L2
ENSG00000132849 PATJ 652233 sc-eQTL 9.67e-01 0.00705 0.168 0.922 NK_cytokine L2
ENSG00000162604 TM2D1 669216 sc-eQTL 2.66e-01 0.183 0.164 0.922 NK_cytokine L2
ENSG00000162607 USP1 -41658 sc-eQTL 2.15e-01 0.215 0.173 0.922 NK_cytokine L2
ENSG00000088035 ALG6 -972936 sc-eQTL 6.55e-01 0.101 0.224 0.919 PB L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 4.49e-01 0.182 0.24 0.919 PB L2
ENSG00000125703 ATG4C -389493 sc-eQTL 3.67e-01 0.189 0.209 0.919 PB L2
ENSG00000132849 PATJ 652233 sc-eQTL 8.46e-01 0.0422 0.217 0.919 PB L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.62e-01 -0.0641 0.211 0.919 PB L2
ENSG00000162607 USP1 -41658 sc-eQTL 1.71e-02 0.491 0.203 0.919 PB L2
ENSG00000088035 ALG6 -972936 sc-eQTL 3.70e-01 -0.148 0.164 0.922 Pro_T L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 9.04e-01 -0.02 0.165 0.922 Pro_T L2
ENSG00000125703 ATG4C -389493 sc-eQTL 3.42e-02 0.305 0.143 0.922 Pro_T L2
ENSG00000132849 PATJ 652233 sc-eQTL 6.54e-01 0.071 0.158 0.922 Pro_T L2
ENSG00000162604 TM2D1 669216 sc-eQTL 2.21e-01 0.216 0.176 0.922 Pro_T L2
ENSG00000162607 USP1 -41658 sc-eQTL 7.27e-01 0.0349 0.0998 0.922 Pro_T L2
ENSG00000088035 ALG6 -972936 sc-eQTL 2.63e-01 -0.202 0.18 0.923 Treg L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 3.49e-01 -0.155 0.165 0.923 Treg L2
ENSG00000125703 ATG4C -389493 sc-eQTL 2.77e-01 -0.184 0.169 0.923 Treg L2
ENSG00000132849 PATJ 652233 sc-eQTL 7.43e-01 -0.0515 0.157 0.923 Treg L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.50e-01 0.0549 0.172 0.923 Treg L2
ENSG00000162607 USP1 -41658 sc-eQTL 3.79e-01 -0.15 0.171 0.923 Treg L2
ENSG00000088035 ALG6 -972936 sc-eQTL 7.96e-01 -0.0451 0.174 0.924 cDC L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 3.63e-01 0.156 0.17 0.924 cDC L2
ENSG00000125703 ATG4C -389493 sc-eQTL 1.06e-01 -0.239 0.147 0.924 cDC L2
ENSG00000162604 TM2D1 669216 sc-eQTL 5.15e-01 -0.121 0.185 0.924 cDC L2
ENSG00000162607 USP1 -41658 sc-eQTL 2.41e-01 -0.196 0.167 0.924 cDC L2
ENSG00000088035 ALG6 -972936 sc-eQTL 6.95e-01 0.0623 0.159 0.923 cMono_IL1B L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.79e-01 -0.0931 0.167 0.923 cMono_IL1B L2
ENSG00000125703 ATG4C -389493 sc-eQTL 1.55e-01 -0.167 0.117 0.923 cMono_IL1B L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.52e-01 0.174 0.121 0.923 cMono_IL1B L2
ENSG00000162607 USP1 -41658 sc-eQTL 6.86e-01 0.0595 0.147 0.923 cMono_IL1B L2
ENSG00000240563 L1TD1 199790 sc-eQTL 5.22e-01 -0.0948 0.148 0.923 cMono_IL1B L2
ENSG00000088035 ALG6 -972936 sc-eQTL 6.89e-02 -0.324 0.177 0.923 cMono_S100A L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 9.40e-03 -0.427 0.163 0.923 cMono_S100A L2
ENSG00000125703 ATG4C -389493 sc-eQTL 7.63e-02 0.253 0.142 0.923 cMono_S100A L2
ENSG00000162604 TM2D1 669216 sc-eQTL 4.97e-01 -0.0996 0.146 0.923 cMono_S100A L2
ENSG00000162607 USP1 -41658 sc-eQTL 6.38e-01 -0.0783 0.166 0.923 cMono_S100A L2
ENSG00000240563 L1TD1 199790 sc-eQTL 5.11e-01 0.091 0.138 0.923 cMono_S100A L2
ENSG00000088035 ALG6 -972936 sc-eQTL 3.98e-01 0.178 0.209 0.93 gdT L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 7.90e-01 0.055 0.206 0.93 gdT L2
ENSG00000125703 ATG4C -389493 sc-eQTL 7.53e-02 -0.349 0.195 0.93 gdT L2
ENSG00000132849 PATJ 652233 sc-eQTL 4.02e-01 -0.161 0.192 0.93 gdT L2
ENSG00000162604 TM2D1 669216 sc-eQTL 3.56e-01 0.187 0.202 0.93 gdT L2
ENSG00000162607 USP1 -41658 sc-eQTL 4.04e-01 -0.165 0.197 0.93 gdT L2
ENSG00000088035 ALG6 -972936 sc-eQTL 2.59e-01 0.186 0.164 0.92 intMono L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 6.13e-01 0.0852 0.168 0.92 intMono L2
ENSG00000125703 ATG4C -389493 sc-eQTL 7.17e-01 0.0583 0.161 0.92 intMono L2
ENSG00000162604 TM2D1 669216 sc-eQTL 1.80e-01 -0.228 0.169 0.92 intMono L2
ENSG00000162607 USP1 -41658 sc-eQTL 4.20e-01 -0.145 0.18 0.92 intMono L2
ENSG00000240563 L1TD1 199790 sc-eQTL 5.41e-01 -0.0811 0.132 0.92 intMono L2
ENSG00000088035 ALG6 -972936 sc-eQTL 7.15e-02 -0.311 0.172 0.921 ncMono L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 8.38e-01 0.0349 0.17 0.921 ncMono L2
ENSG00000125703 ATG4C -389493 sc-eQTL 2.19e-02 -0.362 0.157 0.921 ncMono L2
ENSG00000162604 TM2D1 669216 sc-eQTL 6.35e-01 0.0815 0.171 0.921 ncMono L2
ENSG00000162607 USP1 -41658 sc-eQTL 4.42e-01 -0.131 0.17 0.921 ncMono L2
ENSG00000240563 L1TD1 199790 sc-eQTL 9.31e-01 0.0105 0.121 0.921 ncMono L2
ENSG00000088035 ALG6 -972936 sc-eQTL 5.66e-02 0.36 0.188 0.924 pDC L2
ENSG00000116641 DOCK7 -293747 sc-eQTL 5.59e-01 -0.113 0.194 0.924 pDC L2
ENSG00000125703 ATG4C -389493 sc-eQTL 1.49e-01 -0.251 0.173 0.924 pDC L2
ENSG00000162604 TM2D1 669216 sc-eQTL 7.57e-01 0.0527 0.17 0.924 pDC L2
ENSG00000162607 USP1 -41658 sc-eQTL 1.07e-01 0.32 0.197 0.924 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -972936 sc-eQTL 1.30e-02 -0.457 0.182 0.923 B_Memory LOneK1K
ENSG00000116641 DOCK7 -293747 sc-eQTL 9.38e-01 -0.0124 0.16 0.923 B_Memory LOneK1K
ENSG00000125703 ATG4C -389493 sc-eQTL 5.98e-01 0.0684 0.13 0.923 B_Memory LOneK1K
ENSG00000132849 PATJ 652233 sc-eQTL 9.54e-01 -0.00838 0.144 0.923 B_Memory LOneK1K
ENSG00000162604 TM2D1 669216 sc-eQTL 8.92e-01 -0.0221 0.163 0.923 B_Memory LOneK1K
ENSG00000162607 USP1 -41658 sc-eQTL 4.35e-01 0.129 0.165 0.923 B_Memory LOneK1K
ENSG00000088035 ALG6 -972936 sc-eQTL 1.68e-01 -0.246 0.178 0.923 B_Naive LOneK1K
ENSG00000116641 DOCK7 -293747 sc-eQTL 2.47e-01 0.193 0.166 0.923 B_Naive LOneK1K
ENSG00000125703 ATG4C -389493 sc-eQTL 3.52e-01 0.119 0.127 0.923 B_Naive LOneK1K
ENSG00000132849 PATJ 652233 sc-eQTL 4.70e-01 -0.11 0.152 0.923 B_Naive LOneK1K
ENSG00000162604 TM2D1 669216 sc-eQTL 9.17e-01 0.0151 0.145 0.923 B_Naive LOneK1K
ENSG00000162607 USP1 -41658 sc-eQTL 1.43e-01 0.226 0.154 0.923 B_Naive LOneK1K
ENSG00000088035 ALG6 -972936 sc-eQTL 4.16e-01 -0.128 0.158 0.923 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.69e-01 -0.218 0.158 0.923 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -389493 sc-eQTL 8.60e-01 -0.0195 0.11 0.923 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 669216 sc-eQTL 4.08e-01 0.0949 0.114 0.923 CD14_Mono LOneK1K
ENSG00000162607 USP1 -41658 sc-eQTL 9.83e-01 -0.00292 0.139 0.923 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 199790 sc-eQTL 8.89e-01 -0.021 0.151 0.923 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -972936 sc-eQTL 6.32e-01 -0.0838 0.175 0.922 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 -293747 sc-eQTL 8.10e-01 0.0417 0.173 0.922 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -389493 sc-eQTL 3.41e-01 -0.14 0.147 0.922 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 669216 sc-eQTL 8.03e-01 0.0431 0.172 0.922 CD16_Mono LOneK1K
ENSG00000162607 USP1 -41658 sc-eQTL 6.99e-01 -0.0623 0.161 0.922 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 199790 sc-eQTL 5.55e-01 -0.0648 0.11 0.922 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -972936 sc-eQTL 6.00e-01 -0.0829 0.158 0.922 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 -293747 sc-eQTL 1.72e-02 -0.335 0.139 0.922 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -389493 sc-eQTL 6.51e-01 -0.0639 0.141 0.922 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 652233 sc-eQTL 8.12e-01 0.0363 0.152 0.922 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 669216 sc-eQTL 2.58e-01 0.158 0.139 0.922 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -41658 sc-eQTL 1.64e-04 0.563 0.147 0.922 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162604 \N 669216 4.89e-07 1.92e-07 7.45e-08 2.28e-07 1.07e-07 1.13e-07 3.11e-07 8.11e-08 2.26e-07 1.37e-07 2.68e-07 2.04e-07 3.4e-07 8.54e-08 9.2e-08 1.17e-07 8.64e-08 2.75e-07 8e-08 8e-08 1.33e-07 2.24e-07 2.04e-07 4.81e-08 2.99e-07 1.9e-07 1.39e-07 1.48e-07 1.58e-07 1.81e-07 1.59e-07 5.08e-08 4.86e-08 9.09e-08 6.78e-08 5.04e-08 6.14e-08 7.51e-08 5.69e-08 7.65e-08 4.83e-08 2.15e-07 3.59e-08 1.1e-08 4.91e-08 9.44e-09 9.23e-08 0.0 4.54e-08