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Genes within 1Mb (chr1:62393574:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -974001 sc-eQTL 4.51e-01 -0.0619 0.082 0.474 B L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.60e-01 -0.0478 0.082 0.474 B L1
ENSG00000125703 ATG4C -390558 sc-eQTL 3.72e-01 0.0509 0.0569 0.474 B L1
ENSG00000132849 PATJ 651168 sc-eQTL 2.40e-01 0.0813 0.069 0.474 B L1
ENSG00000162604 TM2D1 668151 sc-eQTL 1.60e-01 -0.0971 0.0688 0.474 B L1
ENSG00000162607 USP1 -42723 sc-eQTL 9.49e-01 -0.00505 0.0788 0.474 B L1
ENSG00000088035 ALG6 -974001 sc-eQTL 2.13e-01 -0.0938 0.0751 0.474 CD4T L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 6.54e-01 -0.0343 0.0763 0.474 CD4T L1
ENSG00000125703 ATG4C -390558 sc-eQTL 3.14e-01 0.062 0.0615 0.474 CD4T L1
ENSG00000132849 PATJ 651168 sc-eQTL 1.88e-01 0.0658 0.0498 0.474 CD4T L1
ENSG00000162604 TM2D1 668151 sc-eQTL 2.53e-01 0.0695 0.0606 0.474 CD4T L1
ENSG00000162607 USP1 -42723 sc-eQTL 6.18e-01 0.0298 0.0598 0.474 CD4T L1
ENSG00000088035 ALG6 -974001 sc-eQTL 7.55e-02 -0.149 0.0835 0.474 CD8T L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 7.28e-01 0.0296 0.0852 0.474 CD8T L1
ENSG00000125703 ATG4C -390558 sc-eQTL 3.85e-01 0.0704 0.0808 0.474 CD8T L1
ENSG00000132849 PATJ 651168 sc-eQTL 9.07e-01 -0.0058 0.0494 0.474 CD8T L1
ENSG00000162604 TM2D1 668151 sc-eQTL 2.06e-01 -0.0937 0.0738 0.474 CD8T L1
ENSG00000162607 USP1 -42723 sc-eQTL 7.14e-01 -0.0259 0.0705 0.474 CD8T L1
ENSG00000088035 ALG6 -974001 sc-eQTL 8.34e-01 -0.0184 0.0879 0.466 DC L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.28e-01 -0.0195 0.09 0.466 DC L1
ENSG00000125703 ATG4C -390558 sc-eQTL 9.56e-01 0.00389 0.0705 0.466 DC L1
ENSG00000162604 TM2D1 668151 sc-eQTL 1.65e-01 0.114 0.0817 0.466 DC L1
ENSG00000162607 USP1 -42723 sc-eQTL 7.91e-01 0.0228 0.086 0.466 DC L1
ENSG00000088035 ALG6 -974001 sc-eQTL 7.32e-01 -0.0295 0.0862 0.474 Mono L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.93e-02 -0.157 0.0827 0.474 Mono L1
ENSG00000125703 ATG4C -390558 sc-eQTL 9.81e-01 0.00136 0.0563 0.474 Mono L1
ENSG00000162604 TM2D1 668151 sc-eQTL 6.48e-01 0.0286 0.0625 0.474 Mono L1
ENSG00000162607 USP1 -42723 sc-eQTL 2.36e-01 0.0866 0.0729 0.474 Mono L1
ENSG00000240563 L1TD1 198725 sc-eQTL 3.44e-01 -0.0646 0.0681 0.474 Mono L1
ENSG00000088035 ALG6 -974001 sc-eQTL 9.42e-02 -0.139 0.0825 0.476 NK L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 2.25e-02 0.155 0.0675 0.476 NK L1
ENSG00000125703 ATG4C -390558 sc-eQTL 8.29e-01 -0.0159 0.0734 0.476 NK L1
ENSG00000132849 PATJ 651168 sc-eQTL 3.07e-01 -0.0736 0.0718 0.476 NK L1
ENSG00000162604 TM2D1 668151 sc-eQTL 6.84e-01 -0.03 0.0737 0.476 NK L1
ENSG00000162607 USP1 -42723 sc-eQTL 9.14e-01 0.00883 0.0815 0.476 NK L1
ENSG00000088035 ALG6 -974001 sc-eQTL 2.88e-01 0.0851 0.0799 0.474 Other_T L1
ENSG00000116641 DOCK7 -294812 sc-eQTL 2.06e-01 0.103 0.0815 0.474 Other_T L1
ENSG00000125703 ATG4C -390558 sc-eQTL 7.30e-01 -0.0245 0.0708 0.474 Other_T L1
ENSG00000132849 PATJ 651168 sc-eQTL 1.32e-01 -0.0991 0.0656 0.474 Other_T L1
ENSG00000162604 TM2D1 668151 sc-eQTL 9.57e-01 0.00417 0.0773 0.474 Other_T L1
ENSG00000162607 USP1 -42723 sc-eQTL 5.78e-01 0.0303 0.0544 0.474 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -974001 sc-eQTL 1.49e-01 0.15 0.104 0.492 B_Activated L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.34e-02 -0.167 0.0961 0.492 B_Activated L2
ENSG00000125703 ATG4C -390558 sc-eQTL 6.31e-01 0.049 0.102 0.492 B_Activated L2
ENSG00000132849 PATJ 651168 sc-eQTL 5.67e-01 0.0497 0.0866 0.492 B_Activated L2
ENSG00000162604 TM2D1 668151 sc-eQTL 2.05e-02 -0.254 0.108 0.492 B_Activated L2
ENSG00000162607 USP1 -42723 sc-eQTL 5.63e-01 -0.0626 0.108 0.492 B_Activated L2
ENSG00000088035 ALG6 -974001 sc-eQTL 9.11e-01 -0.0108 0.0962 0.476 B_Intermediate L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 9.62e-01 0.00441 0.0919 0.476 B_Intermediate L2
ENSG00000125703 ATG4C -390558 sc-eQTL 5.23e-01 -0.0497 0.0777 0.476 B_Intermediate L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.42e-01 0.08 0.0841 0.476 B_Intermediate L2
ENSG00000162604 TM2D1 668151 sc-eQTL 8.96e-01 0.0115 0.0884 0.476 B_Intermediate L2
ENSG00000162607 USP1 -42723 sc-eQTL 9.78e-01 -0.00253 0.0925 0.476 B_Intermediate L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.45e-01 0.031 0.095 0.474 B_Memory L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.53e-01 -0.0165 0.0891 0.474 B_Memory L2
ENSG00000125703 ATG4C -390558 sc-eQTL 7.44e-01 -0.0277 0.0847 0.474 B_Memory L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.08e-01 0.0861 0.0843 0.474 B_Memory L2
ENSG00000162604 TM2D1 668151 sc-eQTL 7.05e-01 -0.0361 0.095 0.474 B_Memory L2
ENSG00000162607 USP1 -42723 sc-eQTL 1.16e-01 0.153 0.0972 0.474 B_Memory L2
ENSG00000088035 ALG6 -974001 sc-eQTL 6.70e-01 -0.0404 0.0948 0.474 B_Naive1 L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 7.40e-01 -0.0302 0.0908 0.474 B_Naive1 L2
ENSG00000125703 ATG4C -390558 sc-eQTL 3.59e-01 0.0641 0.0698 0.474 B_Naive1 L2
ENSG00000132849 PATJ 651168 sc-eQTL 9.84e-01 0.00175 0.0899 0.474 B_Naive1 L2
ENSG00000162604 TM2D1 668151 sc-eQTL 9.88e-01 -0.00123 0.0827 0.474 B_Naive1 L2
ENSG00000162607 USP1 -42723 sc-eQTL 1.92e-01 -0.106 0.0813 0.474 B_Naive1 L2
ENSG00000088035 ALG6 -974001 sc-eQTL 1.97e-01 -0.125 0.0966 0.474 B_Naive2 L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 3.96e-01 -0.0791 0.0931 0.474 B_Naive2 L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.82e-01 0.0133 0.0897 0.474 B_Naive2 L2
ENSG00000132849 PATJ 651168 sc-eQTL 9.90e-01 -0.0012 0.0918 0.474 B_Naive2 L2
ENSG00000162604 TM2D1 668151 sc-eQTL 9.11e-03 -0.241 0.0914 0.474 B_Naive2 L2
ENSG00000162607 USP1 -42723 sc-eQTL 6.49e-01 -0.0422 0.0926 0.474 B_Naive2 L2
ENSG00000088035 ALG6 -974001 sc-eQTL 1.78e-01 -0.135 0.0998 0.47 CD4_CTL L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 9.21e-01 0.00868 0.0877 0.47 CD4_CTL L2
ENSG00000125703 ATG4C -390558 sc-eQTL 9.99e-01 -8.33e-05 0.0907 0.47 CD4_CTL L2
ENSG00000132849 PATJ 651168 sc-eQTL 4.44e-01 -0.0556 0.0726 0.47 CD4_CTL L2
ENSG00000162604 TM2D1 668151 sc-eQTL 2.39e-01 0.109 0.0926 0.47 CD4_CTL L2
ENSG00000162607 USP1 -42723 sc-eQTL 8.28e-01 0.0201 0.0923 0.47 CD4_CTL L2
ENSG00000088035 ALG6 -974001 sc-eQTL 6.03e-01 0.0433 0.0832 0.474 CD4_Naive L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.53e-02 -0.14 0.0812 0.474 CD4_Naive L2
ENSG00000125703 ATG4C -390558 sc-eQTL 3.10e-01 0.0734 0.0721 0.474 CD4_Naive L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.48e-01 0.0476 0.0506 0.474 CD4_Naive L2
ENSG00000162604 TM2D1 668151 sc-eQTL 3.92e-01 0.0626 0.0729 0.474 CD4_Naive L2
ENSG00000162607 USP1 -42723 sc-eQTL 6.90e-01 0.0269 0.0675 0.474 CD4_Naive L2
ENSG00000088035 ALG6 -974001 sc-eQTL 1.65e-03 -0.29 0.0908 0.474 CD4_TCM L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.74e-01 -0.0464 0.0823 0.474 CD4_TCM L2
ENSG00000125703 ATG4C -390558 sc-eQTL 6.41e-01 0.0374 0.0802 0.474 CD4_TCM L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.68e-01 0.0579 0.0643 0.474 CD4_TCM L2
ENSG00000162604 TM2D1 668151 sc-eQTL 9.48e-01 -0.00488 0.0751 0.474 CD4_TCM L2
ENSG00000162607 USP1 -42723 sc-eQTL 3.51e-01 0.0723 0.0774 0.474 CD4_TCM L2
ENSG00000088035 ALG6 -974001 sc-eQTL 2.82e-01 -0.104 0.0961 0.474 CD4_TEM L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.40e-01 0.0576 0.0939 0.474 CD4_TEM L2
ENSG00000125703 ATG4C -390558 sc-eQTL 2.89e-01 0.0967 0.091 0.474 CD4_TEM L2
ENSG00000132849 PATJ 651168 sc-eQTL 1.82e-01 0.113 0.0847 0.474 CD4_TEM L2
ENSG00000162604 TM2D1 668151 sc-eQTL 4.85e-01 0.0626 0.0895 0.474 CD4_TEM L2
ENSG00000162607 USP1 -42723 sc-eQTL 9.68e-01 -0.00361 0.0893 0.474 CD4_TEM L2
ENSG00000088035 ALG6 -974001 sc-eQTL 3.82e-01 -0.0801 0.0914 0.474 CD8_CTL L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 1.52e-01 0.124 0.0865 0.474 CD8_CTL L2
ENSG00000125703 ATG4C -390558 sc-eQTL 1.19e-01 0.144 0.092 0.474 CD8_CTL L2
ENSG00000132849 PATJ 651168 sc-eQTL 6.03e-01 0.0456 0.0876 0.474 CD8_CTL L2
ENSG00000162604 TM2D1 668151 sc-eQTL 2.45e-01 -0.0934 0.0801 0.474 CD8_CTL L2
ENSG00000162607 USP1 -42723 sc-eQTL 8.74e-01 0.0137 0.0861 0.474 CD8_CTL L2
ENSG00000088035 ALG6 -974001 sc-eQTL 2.04e-01 -0.115 0.0904 0.474 CD8_Naive L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 9.15e-02 -0.158 0.0932 0.474 CD8_Naive L2
ENSG00000125703 ATG4C -390558 sc-eQTL 1.77e-01 0.121 0.0897 0.474 CD8_Naive L2
ENSG00000132849 PATJ 651168 sc-eQTL 8.78e-01 -0.0105 0.0689 0.474 CD8_Naive L2
ENSG00000162604 TM2D1 668151 sc-eQTL 5.36e-01 -0.0521 0.0841 0.474 CD8_Naive L2
ENSG00000162607 USP1 -42723 sc-eQTL 4.34e-01 -0.0603 0.077 0.474 CD8_Naive L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.89e-01 0.0271 0.101 0.463 CD8_TCM L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.63e-01 0.0571 0.0984 0.463 CD8_TCM L2
ENSG00000125703 ATG4C -390558 sc-eQTL 5.44e-01 -0.0612 0.101 0.463 CD8_TCM L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.96e-01 0.0787 0.0925 0.463 CD8_TCM L2
ENSG00000162604 TM2D1 668151 sc-eQTL 7.59e-01 -0.0289 0.0942 0.463 CD8_TCM L2
ENSG00000162607 USP1 -42723 sc-eQTL 5.33e-01 -0.0587 0.0941 0.463 CD8_TCM L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.65e-01 0.0298 0.0997 0.477 CD8_TEM L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 6.54e-01 0.0434 0.0967 0.477 CD8_TEM L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.43e-01 -0.0184 0.093 0.477 CD8_TEM L2
ENSG00000132849 PATJ 651168 sc-eQTL 5.84e-01 0.0516 0.0941 0.477 CD8_TEM L2
ENSG00000162604 TM2D1 668151 sc-eQTL 4.47e-01 -0.073 0.0957 0.477 CD8_TEM L2
ENSG00000162607 USP1 -42723 sc-eQTL 1.38e-01 -0.142 0.0955 0.477 CD8_TEM L2
ENSG00000088035 ALG6 -974001 sc-eQTL 8.72e-01 0.0144 0.0888 0.472 MAIT L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.56e-01 -0.0501 0.0851 0.472 MAIT L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.89e-01 0.0125 0.0898 0.472 MAIT L2
ENSG00000132849 PATJ 651168 sc-eQTL 6.00e-02 -0.142 0.0753 0.472 MAIT L2
ENSG00000162604 TM2D1 668151 sc-eQTL 6.20e-01 0.0429 0.0863 0.472 MAIT L2
ENSG00000162607 USP1 -42723 sc-eQTL 4.48e-01 0.0677 0.0891 0.472 MAIT L2
ENSG00000088035 ALG6 -974001 sc-eQTL 3.48e-01 -0.0893 0.095 0.478 NK_CD56bright L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 1.12e-01 0.131 0.082 0.478 NK_CD56bright L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.14e-01 -0.0217 0.0921 0.478 NK_CD56bright L2
ENSG00000132849 PATJ 651168 sc-eQTL 5.33e-01 -0.0563 0.0902 0.478 NK_CD56bright L2
ENSG00000162604 TM2D1 668151 sc-eQTL 5.68e-01 0.0525 0.0918 0.478 NK_CD56bright L2
ENSG00000162607 USP1 -42723 sc-eQTL 5.90e-01 0.0534 0.0989 0.478 NK_CD56bright L2
ENSG00000088035 ALG6 -974001 sc-eQTL 4.09e-02 -0.191 0.093 0.474 NK_CD56dim L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 2.83e-01 0.0877 0.0815 0.474 NK_CD56dim L2
ENSG00000125703 ATG4C -390558 sc-eQTL 1.60e-01 -0.117 0.0826 0.474 NK_CD56dim L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.03e-01 -0.0927 0.0898 0.474 NK_CD56dim L2
ENSG00000162604 TM2D1 668151 sc-eQTL 9.51e-01 -0.0053 0.0854 0.474 NK_CD56dim L2
ENSG00000162607 USP1 -42723 sc-eQTL 6.43e-01 -0.0425 0.0915 0.474 NK_CD56dim L2
ENSG00000088035 ALG6 -974001 sc-eQTL 4.78e-01 -0.0741 0.104 0.482 NK_HLA L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.89e-02 0.15 0.0791 0.482 NK_HLA L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.96e-01 -0.0121 0.0929 0.482 NK_HLA L2
ENSG00000132849 PATJ 651168 sc-eQTL 6.48e-01 -0.0394 0.0862 0.482 NK_HLA L2
ENSG00000162604 TM2D1 668151 sc-eQTL 2.09e-01 0.123 0.0976 0.482 NK_HLA L2
ENSG00000162607 USP1 -42723 sc-eQTL 3.80e-01 0.0897 0.102 0.482 NK_HLA L2
ENSG00000088035 ALG6 -974001 sc-eQTL 8.03e-01 0.0228 0.0913 0.474 NK_cytokine L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 6.17e-01 0.0424 0.0845 0.474 NK_cytokine L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.46e-01 0.0168 0.0865 0.474 NK_cytokine L2
ENSG00000132849 PATJ 651168 sc-eQTL 9.47e-01 0.00608 0.0913 0.474 NK_cytokine L2
ENSG00000162604 TM2D1 668151 sc-eQTL 6.02e-01 -0.0465 0.0892 0.474 NK_cytokine L2
ENSG00000162607 USP1 -42723 sc-eQTL 5.08e-01 0.0624 0.0941 0.474 NK_cytokine L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.91e-01 -0.0333 0.125 0.463 PB L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 3.09e-01 0.136 0.133 0.463 PB L2
ENSG00000125703 ATG4C -390558 sc-eQTL 5.57e-01 0.0685 0.116 0.463 PB L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.38e-01 0.116 0.121 0.463 PB L2
ENSG00000162604 TM2D1 668151 sc-eQTL 1.88e-01 -0.154 0.117 0.463 PB L2
ENSG00000162607 USP1 -42723 sc-eQTL 1.55e-01 0.165 0.115 0.463 PB L2
ENSG00000088035 ALG6 -974001 sc-eQTL 5.40e-01 0.0547 0.0892 0.472 Pro_T L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 7.91e-01 0.0238 0.0895 0.472 Pro_T L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.75e-01 0.0123 0.0784 0.472 Pro_T L2
ENSG00000132849 PATJ 651168 sc-eQTL 6.51e-01 0.0388 0.0855 0.472 Pro_T L2
ENSG00000162604 TM2D1 668151 sc-eQTL 1.98e-01 -0.123 0.0954 0.472 Pro_T L2
ENSG00000162607 USP1 -42723 sc-eQTL 6.82e-01 -0.0222 0.054 0.472 Pro_T L2
ENSG00000088035 ALG6 -974001 sc-eQTL 9.68e-01 -0.00394 0.0969 0.474 Treg L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 5.34e-02 0.171 0.0882 0.474 Treg L2
ENSG00000125703 ATG4C -390558 sc-eQTL 8.58e-01 -0.0163 0.0909 0.474 Treg L2
ENSG00000132849 PATJ 651168 sc-eQTL 3.12e-01 -0.0852 0.0841 0.474 Treg L2
ENSG00000162604 TM2D1 668151 sc-eQTL 3.33e-01 0.0899 0.0926 0.474 Treg L2
ENSG00000162607 USP1 -42723 sc-eQTL 7.28e-01 -0.032 0.092 0.474 Treg L2
ENSG00000088035 ALG6 -974001 sc-eQTL 8.10e-01 -0.0222 0.0925 0.473 cDC L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 4.55e-01 0.0679 0.0906 0.473 cDC L2
ENSG00000125703 ATG4C -390558 sc-eQTL 7.69e-01 0.0231 0.0788 0.473 cDC L2
ENSG00000162604 TM2D1 668151 sc-eQTL 5.63e-01 0.057 0.0984 0.473 cDC L2
ENSG00000162607 USP1 -42723 sc-eQTL 8.47e-01 -0.0172 0.0889 0.473 cDC L2
ENSG00000088035 ALG6 -974001 sc-eQTL 8.76e-01 0.0135 0.0868 0.474 cMono_IL1B L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 6.61e-02 -0.168 0.0908 0.474 cMono_IL1B L2
ENSG00000125703 ATG4C -390558 sc-eQTL 9.40e-01 0.00485 0.0644 0.474 cMono_IL1B L2
ENSG00000162604 TM2D1 668151 sc-eQTL 8.89e-01 0.0093 0.0664 0.474 cMono_IL1B L2
ENSG00000162607 USP1 -42723 sc-eQTL 5.86e-01 -0.0438 0.0804 0.474 cMono_IL1B L2
ENSG00000240563 L1TD1 198725 sc-eQTL 3.01e-01 -0.0836 0.0806 0.474 cMono_IL1B L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.98e-01 -0.0247 0.0965 0.474 cMono_S100A L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 4.08e-01 -0.074 0.0894 0.474 cMono_S100A L2
ENSG00000125703 ATG4C -390558 sc-eQTL 4.14e-01 0.0633 0.0774 0.474 cMono_S100A L2
ENSG00000162604 TM2D1 668151 sc-eQTL 7.47e-01 0.0256 0.0791 0.474 cMono_S100A L2
ENSG00000162607 USP1 -42723 sc-eQTL 2.80e-01 0.0971 0.0897 0.474 cMono_S100A L2
ENSG00000240563 L1TD1 198725 sc-eQTL 3.25e-01 0.0736 0.0747 0.474 cMono_S100A L2
ENSG00000088035 ALG6 -974001 sc-eQTL 8.67e-02 -0.195 0.113 0.479 gdT L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.50e-01 0.0212 0.112 0.479 gdT L2
ENSG00000125703 ATG4C -390558 sc-eQTL 1.12e-01 -0.17 0.106 0.479 gdT L2
ENSG00000132849 PATJ 651168 sc-eQTL 6.69e-01 -0.0446 0.104 0.479 gdT L2
ENSG00000162604 TM2D1 668151 sc-eQTL 1.98e-01 0.141 0.109 0.479 gdT L2
ENSG00000162607 USP1 -42723 sc-eQTL 7.37e-01 0.0361 0.107 0.479 gdT L2
ENSG00000088035 ALG6 -974001 sc-eQTL 3.55e-01 -0.0835 0.0901 0.478 intMono L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 8.27e-01 0.0202 0.0923 0.478 intMono L2
ENSG00000125703 ATG4C -390558 sc-eQTL 6.79e-01 -0.0365 0.088 0.478 intMono L2
ENSG00000162604 TM2D1 668151 sc-eQTL 8.17e-01 0.0216 0.0933 0.478 intMono L2
ENSG00000162607 USP1 -42723 sc-eQTL 8.32e-01 -0.021 0.0987 0.478 intMono L2
ENSG00000240563 L1TD1 198725 sc-eQTL 4.91e-01 -0.05 0.0725 0.478 intMono L2
ENSG00000088035 ALG6 -974001 sc-eQTL 7.40e-01 0.0323 0.0973 0.482 ncMono L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 6.06e-01 -0.0495 0.0957 0.482 ncMono L2
ENSG00000125703 ATG4C -390558 sc-eQTL 7.71e-02 -0.158 0.0888 0.482 ncMono L2
ENSG00000162604 TM2D1 668151 sc-eQTL 4.97e-01 -0.0656 0.0964 0.482 ncMono L2
ENSG00000162607 USP1 -42723 sc-eQTL 7.46e-01 0.031 0.0956 0.482 ncMono L2
ENSG00000240563 L1TD1 198725 sc-eQTL 1.15e-01 -0.107 0.0674 0.482 ncMono L2
ENSG00000088035 ALG6 -974001 sc-eQTL 5.52e-01 -0.0595 0.0999 0.469 pDC L2
ENSG00000116641 DOCK7 -294812 sc-eQTL 1.32e-01 -0.154 0.101 0.469 pDC L2
ENSG00000125703 ATG4C -390558 sc-eQTL 5.57e-01 -0.0539 0.0916 0.469 pDC L2
ENSG00000162604 TM2D1 668151 sc-eQTL 9.77e-02 0.148 0.089 0.469 pDC L2
ENSG00000162607 USP1 -42723 sc-eQTL 4.82e-01 0.0738 0.105 0.469 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -974001 sc-eQTL 8.57e-01 -0.0178 0.0985 0.474 B_Memory LOneK1K
ENSG00000116641 DOCK7 -294812 sc-eQTL 9.23e-01 -0.0083 0.0855 0.474 B_Memory LOneK1K
ENSG00000125703 ATG4C -390558 sc-eQTL 1.00e+00 -8.18e-06 0.0691 0.474 B_Memory LOneK1K
ENSG00000132849 PATJ 651168 sc-eQTL 9.80e-02 0.126 0.0761 0.474 B_Memory LOneK1K
ENSG00000162604 TM2D1 668151 sc-eQTL 9.25e-01 -0.00825 0.0869 0.474 B_Memory LOneK1K
ENSG00000162607 USP1 -42723 sc-eQTL 2.57e-01 0.0998 0.0879 0.474 B_Memory LOneK1K
ENSG00000088035 ALG6 -974001 sc-eQTL 2.14e-01 -0.118 0.0949 0.474 B_Naive LOneK1K
ENSG00000116641 DOCK7 -294812 sc-eQTL 3.66e-01 -0.0804 0.0888 0.474 B_Naive LOneK1K
ENSG00000125703 ATG4C -390558 sc-eQTL 1.15e-01 0.107 0.0675 0.474 B_Naive LOneK1K
ENSG00000132849 PATJ 651168 sc-eQTL 8.20e-01 -0.0185 0.0812 0.474 B_Naive LOneK1K
ENSG00000162604 TM2D1 668151 sc-eQTL 2.60e-01 -0.0872 0.0772 0.474 B_Naive LOneK1K
ENSG00000162607 USP1 -42723 sc-eQTL 3.54e-01 -0.0764 0.0823 0.474 B_Naive LOneK1K
ENSG00000088035 ALG6 -974001 sc-eQTL 9.34e-01 -0.00713 0.0856 0.474 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 -294812 sc-eQTL 1.08e-01 -0.138 0.0857 0.474 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -390558 sc-eQTL 3.84e-01 0.0519 0.0595 0.474 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 668151 sc-eQTL 8.37e-01 0.0128 0.0621 0.474 CD14_Mono LOneK1K
ENSG00000162607 USP1 -42723 sc-eQTL 7.43e-01 0.0247 0.0753 0.474 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 198725 sc-eQTL 7.69e-01 -0.024 0.0816 0.474 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -974001 sc-eQTL 3.08e-01 -0.0976 0.0956 0.478 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 -294812 sc-eQTL 4.34e-01 -0.0742 0.0947 0.478 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -390558 sc-eQTL 5.54e-02 -0.154 0.0802 0.478 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 668151 sc-eQTL 8.15e-01 0.0222 0.0946 0.478 CD16_Mono LOneK1K
ENSG00000162607 USP1 -42723 sc-eQTL 8.19e-01 -0.0202 0.0882 0.478 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 198725 sc-eQTL 1.54e-01 -0.0856 0.0599 0.478 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -974001 sc-eQTL 1.06e-01 -0.139 0.0857 0.474 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 -294812 sc-eQTL 1.49e-01 0.111 0.0768 0.474 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -390558 sc-eQTL 5.36e-01 -0.0478 0.077 0.474 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 651168 sc-eQTL 2.68e-01 -0.0921 0.0828 0.474 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 668151 sc-eQTL 6.30e-01 -0.0367 0.0761 0.474 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -42723 sc-eQTL 8.20e-01 0.0189 0.0829 0.474 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 -294794 eQTL 0.433 -0.0183 0.0233 0.0109 0.00265 0.487
ENSG00000125703 ATG4C -390558 eQTL 0.00658 0.048 0.0176 0.0 0.0 0.487
ENSG00000240563 L1TD1 198725 eQTL 0.0488 -0.0799 0.0405 0.0 0.0 0.487

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162607 \N -42723 1.31e-05 1.51e-05 2.97e-06 9.77e-06 3.05e-06 6.96e-06 2.11e-05 3.29e-06 1.64e-05 8.28e-06 2.06e-05 7.82e-06 2.73e-05 6.43e-06 4.78e-06 1.01e-05 8.15e-06 1.35e-05 4.64e-06 4.29e-06 8.31e-06 1.45e-05 1.54e-05 5.19e-06 2.74e-05 5.37e-06 8.02e-06 7.72e-06 1.66e-05 1.42e-05 1.16e-05 1.51e-06 1.81e-06 5.15e-06 6.94e-06 4.46e-06 2.36e-06 2.74e-06 3.16e-06 2.42e-06 1.72e-06 1.96e-05 2.48e-06 3.84e-07 1.95e-06 2.68e-06 3.33e-06 1.34e-06 1.11e-06
ENSG00000240563 L1TD1 198725 2.77e-06 2.75e-06 3.67e-07 1.89e-06 6.85e-07 7.86e-07 2.45e-06 7.58e-07 2.27e-06 1.21e-06 2.57e-06 1.4e-06 4.01e-06 1.43e-06 9.19e-07 1.96e-06 1.41e-06 2.31e-06 1.6e-06 1.28e-06 1.37e-06 3.1e-06 2.67e-06 1.46e-06 4.32e-06 1.09e-06 1.55e-06 1.78e-06 2.68e-06 2.2e-06 2.01e-06 4.53e-07 6.63e-07 1.36e-06 1.63e-06 9.75e-07 9.07e-07 4.66e-07 1.34e-06 4.17e-07 4.41e-07 3.96e-06 6.18e-07 1.62e-07 3.46e-07 3.73e-07 8.55e-07 1.99e-07 1.75e-07