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Genes within 1Mb (chr1:62390670:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -976905 sc-eQTL 8.98e-02 -0.261 0.153 0.923 B L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.13e-01 0.078 0.154 0.923 B L1
ENSG00000125703 ATG4C -393462 sc-eQTL 5.68e-01 0.0612 0.107 0.923 B L1
ENSG00000132849 PATJ 648264 sc-eQTL 8.51e-01 -0.0245 0.13 0.923 B L1
ENSG00000162604 TM2D1 665247 sc-eQTL 8.87e-01 -0.0184 0.13 0.923 B L1
ENSG00000162607 USP1 -45627 sc-eQTL 1.46e-01 0.215 0.147 0.923 B L1
ENSG00000088035 ALG6 -976905 sc-eQTL 4.24e-01 -0.114 0.142 0.923 CD4T L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.55e-01 -0.0851 0.144 0.923 CD4T L1
ENSG00000125703 ATG4C -393462 sc-eQTL 2.72e-01 0.128 0.116 0.923 CD4T L1
ENSG00000132849 PATJ 648264 sc-eQTL 1.93e-03 0.29 0.0923 0.923 CD4T L1
ENSG00000162604 TM2D1 665247 sc-eQTL 3.74e-01 0.102 0.115 0.923 CD4T L1
ENSG00000162607 USP1 -45627 sc-eQTL 8.02e-01 -0.0284 0.113 0.923 CD4T L1
ENSG00000088035 ALG6 -976905 sc-eQTL 4.47e-01 0.117 0.154 0.923 CD8T L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.63e-01 0.0681 0.156 0.923 CD8T L1
ENSG00000125703 ATG4C -393462 sc-eQTL 6.07e-01 0.0763 0.148 0.923 CD8T L1
ENSG00000132849 PATJ 648264 sc-eQTL 7.13e-01 -0.0333 0.0904 0.923 CD8T L1
ENSG00000162604 TM2D1 665247 sc-eQTL 7.12e-01 0.0502 0.136 0.923 CD8T L1
ENSG00000162607 USP1 -45627 sc-eQTL 1.63e-01 -0.18 0.129 0.923 CD8T L1
ENSG00000088035 ALG6 -976905 sc-eQTL 3.47e-01 0.15 0.159 0.921 DC L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.26e-01 0.104 0.164 0.921 DC L1
ENSG00000125703 ATG4C -393462 sc-eQTL 7.47e-02 -0.228 0.127 0.921 DC L1
ENSG00000162604 TM2D1 665247 sc-eQTL 4.35e-01 -0.117 0.149 0.921 DC L1
ENSG00000162607 USP1 -45627 sc-eQTL 7.16e-01 -0.0569 0.156 0.921 DC L1
ENSG00000088035 ALG6 -976905 sc-eQTL 5.34e-01 -0.0997 0.16 0.923 Mono L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 2.75e-01 -0.169 0.154 0.923 Mono L1
ENSG00000125703 ATG4C -393462 sc-eQTL 4.48e-01 -0.0794 0.104 0.923 Mono L1
ENSG00000162604 TM2D1 665247 sc-eQTL 5.22e-01 0.0745 0.116 0.923 Mono L1
ENSG00000162607 USP1 -45627 sc-eQTL 9.70e-01 0.00506 0.136 0.923 Mono L1
ENSG00000240563 L1TD1 195821 sc-eQTL 6.05e-01 -0.0656 0.127 0.923 Mono L1
ENSG00000088035 ALG6 -976905 sc-eQTL 2.10e-01 -0.19 0.151 0.923 NK L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.74e-01 -0.169 0.124 0.923 NK L1
ENSG00000125703 ATG4C -393462 sc-eQTL 5.30e-01 -0.0844 0.134 0.923 NK L1
ENSG00000132849 PATJ 648264 sc-eQTL 6.76e-01 0.0549 0.131 0.923 NK L1
ENSG00000162604 TM2D1 665247 sc-eQTL 1.96e-01 0.174 0.134 0.923 NK L1
ENSG00000162607 USP1 -45627 sc-eQTL 8.19e-03 0.391 0.146 0.923 NK L1
ENSG00000088035 ALG6 -976905 sc-eQTL 7.19e-01 0.0541 0.15 0.923 Other_T L1
ENSG00000116641 DOCK7 -297716 sc-eQTL 8.43e-01 0.0305 0.154 0.923 Other_T L1
ENSG00000125703 ATG4C -393462 sc-eQTL 4.19e-01 0.107 0.133 0.923 Other_T L1
ENSG00000132849 PATJ 648264 sc-eQTL 9.70e-01 0.00471 0.124 0.923 Other_T L1
ENSG00000162604 TM2D1 665247 sc-eQTL 9.59e-01 0.00748 0.145 0.923 Other_T L1
ENSG00000162607 USP1 -45627 sc-eQTL 3.48e-01 0.0959 0.102 0.923 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -976905 sc-eQTL 5.59e-01 -0.114 0.194 0.926 B_Activated L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.07e-01 -0.291 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C -393462 sc-eQTL 8.00e-01 0.0483 0.19 0.926 B_Activated L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.47e-01 -0.0523 0.162 0.926 B_Activated L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.20e-03 -0.656 0.199 0.926 B_Activated L2
ENSG00000162607 USP1 -45627 sc-eQTL 1.28e-01 0.306 0.2 0.926 B_Activated L2
ENSG00000088035 ALG6 -976905 sc-eQTL 1.16e-02 -0.458 0.18 0.925 B_Intermediate L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 8.49e-01 -0.0332 0.174 0.925 B_Intermediate L2
ENSG00000125703 ATG4C -393462 sc-eQTL 6.41e-01 -0.0689 0.148 0.925 B_Intermediate L2
ENSG00000132849 PATJ 648264 sc-eQTL 8.10e-01 0.0384 0.16 0.925 B_Intermediate L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.75e-01 -0.048 0.168 0.925 B_Intermediate L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.27e-01 0.111 0.175 0.925 B_Intermediate L2
ENSG00000088035 ALG6 -976905 sc-eQTL 8.08e-01 0.0434 0.179 0.922 B_Memory L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 8.95e-01 0.0221 0.168 0.922 B_Memory L2
ENSG00000125703 ATG4C -393462 sc-eQTL 3.16e-01 0.16 0.159 0.922 B_Memory L2
ENSG00000132849 PATJ 648264 sc-eQTL 9.09e-01 -0.0181 0.159 0.922 B_Memory L2
ENSG00000162604 TM2D1 665247 sc-eQTL 5.60e-02 0.341 0.177 0.922 B_Memory L2
ENSG00000162607 USP1 -45627 sc-eQTL 4.58e-01 0.137 0.184 0.922 B_Memory L2
ENSG00000088035 ALG6 -976905 sc-eQTL 5.37e-01 -0.11 0.178 0.923 B_Naive1 L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.11e-01 0.271 0.17 0.923 B_Naive1 L2
ENSG00000125703 ATG4C -393462 sc-eQTL 6.42e-02 0.243 0.13 0.923 B_Naive1 L2
ENSG00000132849 PATJ 648264 sc-eQTL 4.92e-01 -0.116 0.169 0.923 B_Naive1 L2
ENSG00000162604 TM2D1 665247 sc-eQTL 9.27e-01 -0.0143 0.155 0.923 B_Naive1 L2
ENSG00000162607 USP1 -45627 sc-eQTL 8.23e-01 0.0344 0.153 0.923 B_Naive1 L2
ENSG00000088035 ALG6 -976905 sc-eQTL 4.67e-01 -0.133 0.183 0.923 B_Naive2 L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 9.13e-01 -0.0192 0.176 0.923 B_Naive2 L2
ENSG00000125703 ATG4C -393462 sc-eQTL 3.63e-01 -0.154 0.169 0.923 B_Naive2 L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.40e-01 0.0575 0.173 0.923 B_Naive2 L2
ENSG00000162604 TM2D1 665247 sc-eQTL 6.94e-01 -0.069 0.175 0.923 B_Naive2 L2
ENSG00000162607 USP1 -45627 sc-eQTL 6.05e-02 0.327 0.173 0.923 B_Naive2 L2
ENSG00000088035 ALG6 -976905 sc-eQTL 7.93e-02 -0.325 0.184 0.918 CD4_CTL L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 4.88e-01 -0.113 0.162 0.918 CD4_CTL L2
ENSG00000125703 ATG4C -393462 sc-eQTL 3.18e-01 0.168 0.168 0.918 CD4_CTL L2
ENSG00000132849 PATJ 648264 sc-eQTL 3.38e-01 -0.129 0.134 0.918 CD4_CTL L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.77e-03 0.532 0.168 0.918 CD4_CTL L2
ENSG00000162607 USP1 -45627 sc-eQTL 8.00e-01 0.0433 0.171 0.918 CD4_CTL L2
ENSG00000088035 ALG6 -976905 sc-eQTL 7.34e-01 0.0532 0.156 0.923 CD4_Naive L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.62e-01 -0.0672 0.153 0.923 CD4_Naive L2
ENSG00000125703 ATG4C -393462 sc-eQTL 5.57e-01 0.0797 0.136 0.923 CD4_Naive L2
ENSG00000132849 PATJ 648264 sc-eQTL 3.30e-04 0.337 0.0924 0.923 CD4_Naive L2
ENSG00000162604 TM2D1 665247 sc-eQTL 4.97e-01 0.0932 0.137 0.923 CD4_Naive L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.83e-01 -0.0697 0.127 0.923 CD4_Naive L2
ENSG00000088035 ALG6 -976905 sc-eQTL 2.45e-01 -0.203 0.174 0.923 CD4_TCM L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.12e-01 -0.0786 0.155 0.923 CD4_TCM L2
ENSG00000125703 ATG4C -393462 sc-eQTL 8.83e-01 -0.0222 0.151 0.923 CD4_TCM L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.97e-01 -0.0312 0.121 0.923 CD4_TCM L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.28e-01 0.049 0.141 0.923 CD4_TCM L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.18e-01 0.0941 0.145 0.923 CD4_TCM L2
ENSG00000088035 ALG6 -976905 sc-eQTL 8.58e-01 -0.0318 0.177 0.923 CD4_TEM L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 3.76e-01 -0.153 0.172 0.923 CD4_TEM L2
ENSG00000125703 ATG4C -393462 sc-eQTL 2.49e-01 0.193 0.167 0.923 CD4_TEM L2
ENSG00000132849 PATJ 648264 sc-eQTL 2.90e-02 0.34 0.155 0.923 CD4_TEM L2
ENSG00000162604 TM2D1 665247 sc-eQTL 2.80e-01 -0.178 0.164 0.923 CD4_TEM L2
ENSG00000162607 USP1 -45627 sc-eQTL 9.12e-01 0.0181 0.164 0.923 CD4_TEM L2
ENSG00000088035 ALG6 -976905 sc-eQTL 5.66e-01 0.0975 0.17 0.923 CD8_CTL L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.53e-01 -0.0724 0.161 0.923 CD8_CTL L2
ENSG00000125703 ATG4C -393462 sc-eQTL 9.94e-01 -0.00128 0.172 0.923 CD8_CTL L2
ENSG00000132849 PATJ 648264 sc-eQTL 9.03e-01 0.0198 0.162 0.923 CD8_CTL L2
ENSG00000162604 TM2D1 665247 sc-eQTL 5.28e-01 0.0941 0.149 0.923 CD8_CTL L2
ENSG00000162607 USP1 -45627 sc-eQTL 1.96e-01 -0.206 0.159 0.923 CD8_CTL L2
ENSG00000088035 ALG6 -976905 sc-eQTL 9.28e-01 -0.0153 0.17 0.923 CD8_Naive L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.98e-02 -0.406 0.173 0.923 CD8_Naive L2
ENSG00000125703 ATG4C -393462 sc-eQTL 4.36e-01 0.131 0.168 0.923 CD8_Naive L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.72e-01 -0.0374 0.129 0.923 CD8_Naive L2
ENSG00000162604 TM2D1 665247 sc-eQTL 4.69e-01 0.114 0.157 0.923 CD8_Naive L2
ENSG00000162607 USP1 -45627 sc-eQTL 1.26e-01 -0.22 0.143 0.923 CD8_Naive L2
ENSG00000088035 ALG6 -976905 sc-eQTL 2.58e-01 0.2 0.176 0.917 CD8_TCM L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.18e-01 0.112 0.172 0.917 CD8_TCM L2
ENSG00000125703 ATG4C -393462 sc-eQTL 7.55e-01 -0.0551 0.176 0.917 CD8_TCM L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.53e-01 -0.0512 0.162 0.917 CD8_TCM L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.31e-01 -0.249 0.164 0.917 CD8_TCM L2
ENSG00000162607 USP1 -45627 sc-eQTL 3.87e-01 0.143 0.165 0.917 CD8_TCM L2
ENSG00000088035 ALG6 -976905 sc-eQTL 7.34e-01 -0.0631 0.186 0.927 CD8_TEM L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.27e-01 0.274 0.179 0.927 CD8_TEM L2
ENSG00000125703 ATG4C -393462 sc-eQTL 9.85e-01 0.00329 0.173 0.927 CD8_TEM L2
ENSG00000132849 PATJ 648264 sc-eQTL 8.67e-01 -0.0293 0.175 0.927 CD8_TEM L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.42e-01 -0.0588 0.178 0.927 CD8_TEM L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.11e-03 -0.496 0.175 0.927 CD8_TEM L2
ENSG00000088035 ALG6 -976905 sc-eQTL 5.44e-01 0.102 0.167 0.922 MAIT L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 9.43e-01 -0.0115 0.161 0.922 MAIT L2
ENSG00000125703 ATG4C -393462 sc-eQTL 1.83e-01 0.225 0.169 0.922 MAIT L2
ENSG00000132849 PATJ 648264 sc-eQTL 9.39e-01 -0.0111 0.143 0.922 MAIT L2
ENSG00000162604 TM2D1 665247 sc-eQTL 2.99e-01 -0.169 0.162 0.922 MAIT L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.63e-01 0.0974 0.168 0.922 MAIT L2
ENSG00000088035 ALG6 -976905 sc-eQTL 4.49e-03 -0.491 0.171 0.92 NK_CD56bright L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 7.48e-01 0.0486 0.151 0.92 NK_CD56bright L2
ENSG00000125703 ATG4C -393462 sc-eQTL 5.26e-01 0.107 0.169 0.92 NK_CD56bright L2
ENSG00000132849 PATJ 648264 sc-eQTL 5.53e-01 0.0981 0.165 0.92 NK_CD56bright L2
ENSG00000162604 TM2D1 665247 sc-eQTL 9.87e-01 0.0027 0.168 0.92 NK_CD56bright L2
ENSG00000162607 USP1 -45627 sc-eQTL 9.27e-01 0.0167 0.181 0.92 NK_CD56bright L2
ENSG00000088035 ALG6 -976905 sc-eQTL 2.79e-01 -0.184 0.17 0.922 NK_CD56dim L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.01e-01 -0.243 0.147 0.922 NK_CD56dim L2
ENSG00000125703 ATG4C -393462 sc-eQTL 1.58e-01 -0.212 0.15 0.922 NK_CD56dim L2
ENSG00000132849 PATJ 648264 sc-eQTL 3.47e-01 0.153 0.163 0.922 NK_CD56dim L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.45e-01 0.226 0.154 0.922 NK_CD56dim L2
ENSG00000162607 USP1 -45627 sc-eQTL 5.14e-03 0.461 0.163 0.922 NK_CD56dim L2
ENSG00000088035 ALG6 -976905 sc-eQTL 6.08e-01 0.1 0.194 0.925 NK_HLA L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.57e-01 0.0661 0.149 0.925 NK_HLA L2
ENSG00000125703 ATG4C -393462 sc-eQTL 2.15e-01 0.215 0.172 0.925 NK_HLA L2
ENSG00000132849 PATJ 648264 sc-eQTL 6.42e-01 -0.0748 0.16 0.925 NK_HLA L2
ENSG00000162604 TM2D1 665247 sc-eQTL 5.67e-01 -0.104 0.182 0.925 NK_HLA L2
ENSG00000162607 USP1 -45627 sc-eQTL 8.93e-02 0.322 0.189 0.925 NK_HLA L2
ENSG00000088035 ALG6 -976905 sc-eQTL 5.43e-01 0.102 0.168 0.922 NK_cytokine L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.75e-03 -0.427 0.153 0.922 NK_cytokine L2
ENSG00000125703 ATG4C -393462 sc-eQTL 8.28e-01 0.0346 0.159 0.922 NK_cytokine L2
ENSG00000132849 PATJ 648264 sc-eQTL 9.67e-01 0.00705 0.168 0.922 NK_cytokine L2
ENSG00000162604 TM2D1 665247 sc-eQTL 2.66e-01 0.183 0.164 0.922 NK_cytokine L2
ENSG00000162607 USP1 -45627 sc-eQTL 2.15e-01 0.215 0.173 0.922 NK_cytokine L2
ENSG00000088035 ALG6 -976905 sc-eQTL 6.55e-01 0.101 0.224 0.919 PB L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 4.49e-01 0.182 0.24 0.919 PB L2
ENSG00000125703 ATG4C -393462 sc-eQTL 3.67e-01 0.189 0.209 0.919 PB L2
ENSG00000132849 PATJ 648264 sc-eQTL 8.46e-01 0.0422 0.217 0.919 PB L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.62e-01 -0.0641 0.211 0.919 PB L2
ENSG00000162607 USP1 -45627 sc-eQTL 1.71e-02 0.491 0.203 0.919 PB L2
ENSG00000088035 ALG6 -976905 sc-eQTL 3.70e-01 -0.148 0.164 0.922 Pro_T L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 9.04e-01 -0.02 0.165 0.922 Pro_T L2
ENSG00000125703 ATG4C -393462 sc-eQTL 3.42e-02 0.305 0.143 0.922 Pro_T L2
ENSG00000132849 PATJ 648264 sc-eQTL 6.54e-01 0.071 0.158 0.922 Pro_T L2
ENSG00000162604 TM2D1 665247 sc-eQTL 2.21e-01 0.216 0.176 0.922 Pro_T L2
ENSG00000162607 USP1 -45627 sc-eQTL 7.27e-01 0.0349 0.0998 0.922 Pro_T L2
ENSG00000088035 ALG6 -976905 sc-eQTL 2.63e-01 -0.202 0.18 0.923 Treg L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 3.49e-01 -0.155 0.165 0.923 Treg L2
ENSG00000125703 ATG4C -393462 sc-eQTL 2.77e-01 -0.184 0.169 0.923 Treg L2
ENSG00000132849 PATJ 648264 sc-eQTL 7.43e-01 -0.0515 0.157 0.923 Treg L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.50e-01 0.0549 0.172 0.923 Treg L2
ENSG00000162607 USP1 -45627 sc-eQTL 3.79e-01 -0.15 0.171 0.923 Treg L2
ENSG00000088035 ALG6 -976905 sc-eQTL 7.96e-01 -0.0451 0.174 0.924 cDC L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 3.63e-01 0.156 0.17 0.924 cDC L2
ENSG00000125703 ATG4C -393462 sc-eQTL 1.06e-01 -0.239 0.147 0.924 cDC L2
ENSG00000162604 TM2D1 665247 sc-eQTL 5.15e-01 -0.121 0.185 0.924 cDC L2
ENSG00000162607 USP1 -45627 sc-eQTL 2.41e-01 -0.196 0.167 0.924 cDC L2
ENSG00000088035 ALG6 -976905 sc-eQTL 6.95e-01 0.0623 0.159 0.923 cMono_IL1B L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.79e-01 -0.0931 0.167 0.923 cMono_IL1B L2
ENSG00000125703 ATG4C -393462 sc-eQTL 1.55e-01 -0.167 0.117 0.923 cMono_IL1B L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.52e-01 0.174 0.121 0.923 cMono_IL1B L2
ENSG00000162607 USP1 -45627 sc-eQTL 6.86e-01 0.0595 0.147 0.923 cMono_IL1B L2
ENSG00000240563 L1TD1 195821 sc-eQTL 5.22e-01 -0.0948 0.148 0.923 cMono_IL1B L2
ENSG00000088035 ALG6 -976905 sc-eQTL 6.89e-02 -0.324 0.177 0.923 cMono_S100A L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 9.40e-03 -0.427 0.163 0.923 cMono_S100A L2
ENSG00000125703 ATG4C -393462 sc-eQTL 7.63e-02 0.253 0.142 0.923 cMono_S100A L2
ENSG00000162604 TM2D1 665247 sc-eQTL 4.97e-01 -0.0996 0.146 0.923 cMono_S100A L2
ENSG00000162607 USP1 -45627 sc-eQTL 6.38e-01 -0.0783 0.166 0.923 cMono_S100A L2
ENSG00000240563 L1TD1 195821 sc-eQTL 5.11e-01 0.091 0.138 0.923 cMono_S100A L2
ENSG00000088035 ALG6 -976905 sc-eQTL 3.98e-01 0.178 0.209 0.93 gdT L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 7.90e-01 0.055 0.206 0.93 gdT L2
ENSG00000125703 ATG4C -393462 sc-eQTL 7.53e-02 -0.349 0.195 0.93 gdT L2
ENSG00000132849 PATJ 648264 sc-eQTL 4.02e-01 -0.161 0.192 0.93 gdT L2
ENSG00000162604 TM2D1 665247 sc-eQTL 3.56e-01 0.187 0.202 0.93 gdT L2
ENSG00000162607 USP1 -45627 sc-eQTL 4.04e-01 -0.165 0.197 0.93 gdT L2
ENSG00000088035 ALG6 -976905 sc-eQTL 2.59e-01 0.186 0.164 0.92 intMono L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 6.13e-01 0.0852 0.168 0.92 intMono L2
ENSG00000125703 ATG4C -393462 sc-eQTL 7.17e-01 0.0583 0.161 0.92 intMono L2
ENSG00000162604 TM2D1 665247 sc-eQTL 1.80e-01 -0.228 0.169 0.92 intMono L2
ENSG00000162607 USP1 -45627 sc-eQTL 4.20e-01 -0.145 0.18 0.92 intMono L2
ENSG00000240563 L1TD1 195821 sc-eQTL 5.41e-01 -0.0811 0.132 0.92 intMono L2
ENSG00000088035 ALG6 -976905 sc-eQTL 7.15e-02 -0.311 0.172 0.921 ncMono L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 8.38e-01 0.0349 0.17 0.921 ncMono L2
ENSG00000125703 ATG4C -393462 sc-eQTL 2.19e-02 -0.362 0.157 0.921 ncMono L2
ENSG00000162604 TM2D1 665247 sc-eQTL 6.35e-01 0.0815 0.171 0.921 ncMono L2
ENSG00000162607 USP1 -45627 sc-eQTL 4.42e-01 -0.131 0.17 0.921 ncMono L2
ENSG00000240563 L1TD1 195821 sc-eQTL 9.31e-01 0.0105 0.121 0.921 ncMono L2
ENSG00000088035 ALG6 -976905 sc-eQTL 5.66e-02 0.36 0.188 0.924 pDC L2
ENSG00000116641 DOCK7 -297716 sc-eQTL 5.59e-01 -0.113 0.194 0.924 pDC L2
ENSG00000125703 ATG4C -393462 sc-eQTL 1.49e-01 -0.251 0.173 0.924 pDC L2
ENSG00000162604 TM2D1 665247 sc-eQTL 7.57e-01 0.0527 0.17 0.924 pDC L2
ENSG00000162607 USP1 -45627 sc-eQTL 1.07e-01 0.32 0.197 0.924 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000088035 ALG6 -976905 sc-eQTL 1.30e-02 -0.457 0.182 0.923 B_Memory LOneK1K
ENSG00000116641 DOCK7 -297716 sc-eQTL 9.38e-01 -0.0124 0.16 0.923 B_Memory LOneK1K
ENSG00000125703 ATG4C -393462 sc-eQTL 5.98e-01 0.0684 0.13 0.923 B_Memory LOneK1K
ENSG00000132849 PATJ 648264 sc-eQTL 9.54e-01 -0.00838 0.144 0.923 B_Memory LOneK1K
ENSG00000162604 TM2D1 665247 sc-eQTL 8.92e-01 -0.0221 0.163 0.923 B_Memory LOneK1K
ENSG00000162607 USP1 -45627 sc-eQTL 4.35e-01 0.129 0.165 0.923 B_Memory LOneK1K
ENSG00000088035 ALG6 -976905 sc-eQTL 1.68e-01 -0.246 0.178 0.923 B_Naive LOneK1K
ENSG00000116641 DOCK7 -297716 sc-eQTL 2.47e-01 0.193 0.166 0.923 B_Naive LOneK1K
ENSG00000125703 ATG4C -393462 sc-eQTL 3.52e-01 0.119 0.127 0.923 B_Naive LOneK1K
ENSG00000132849 PATJ 648264 sc-eQTL 4.70e-01 -0.11 0.152 0.923 B_Naive LOneK1K
ENSG00000162604 TM2D1 665247 sc-eQTL 9.17e-01 0.0151 0.145 0.923 B_Naive LOneK1K
ENSG00000162607 USP1 -45627 sc-eQTL 1.43e-01 0.226 0.154 0.923 B_Naive LOneK1K
ENSG00000088035 ALG6 -976905 sc-eQTL 4.16e-01 -0.128 0.158 0.923 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.69e-01 -0.218 0.158 0.923 CD14_Mono LOneK1K
ENSG00000125703 ATG4C -393462 sc-eQTL 8.60e-01 -0.0195 0.11 0.923 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 665247 sc-eQTL 4.08e-01 0.0949 0.114 0.923 CD14_Mono LOneK1K
ENSG00000162607 USP1 -45627 sc-eQTL 9.83e-01 -0.00292 0.139 0.923 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 195821 sc-eQTL 8.89e-01 -0.021 0.151 0.923 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -976905 sc-eQTL 6.32e-01 -0.0838 0.175 0.922 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 -297716 sc-eQTL 8.10e-01 0.0417 0.173 0.922 CD16_Mono LOneK1K
ENSG00000125703 ATG4C -393462 sc-eQTL 3.41e-01 -0.14 0.147 0.922 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 665247 sc-eQTL 8.03e-01 0.0431 0.172 0.922 CD16_Mono LOneK1K
ENSG00000162607 USP1 -45627 sc-eQTL 6.99e-01 -0.0623 0.161 0.922 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 195821 sc-eQTL 5.55e-01 -0.0648 0.11 0.922 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -976905 sc-eQTL 6.00e-01 -0.0829 0.158 0.922 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 -297716 sc-eQTL 1.72e-02 -0.335 0.139 0.922 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C -393462 sc-eQTL 6.51e-01 -0.0639 0.141 0.922 NK_CD56dim LOneK1K
ENSG00000132849 PATJ 648264 sc-eQTL 8.12e-01 0.0363 0.152 0.922 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 665247 sc-eQTL 2.58e-01 0.158 0.139 0.922 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -45627 sc-eQTL 1.64e-04 0.563 0.147 0.922 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 \N 648264 6.33e-07 5.74e-07 1.23e-07 3.54e-07 1.04e-07 2.64e-07 6.06e-07 1.31e-07 4.19e-07 2.28e-07 8.58e-07 2.28e-07 1.3e-06 1.56e-07 2.86e-07 1.75e-07 3.93e-07 3.74e-07 1.89e-07 1.76e-07 2.38e-07 4.31e-07 3.08e-07 1.04e-07 6.18e-07 2.36e-07 3.04e-07 3.89e-07 3.58e-07 6.81e-07 3.32e-07 4.28e-08 5.38e-08 1.75e-07 3.63e-07 2.13e-07 1.01e-07 7.51e-08 7.63e-08 9.13e-08 8.29e-08 6.8e-07 2.99e-08 5.74e-09 1.25e-07 1.34e-07 9.73e-08 3.25e-09 4.83e-08