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Genes within 1Mb (chr1:62154486:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000116641 DOCK7 -533900 sc-eQTL 5.42e-01 0.132 0.216 0.054 B_Activated L2
ENSG00000125703 ATG4C -629646 sc-eQTL 6.68e-01 -0.0975 0.227 0.054 B_Activated L2
ENSG00000132849 PATJ 412080 sc-eQTL 7.28e-01 -0.0673 0.193 0.054 B_Activated L2
ENSG00000162604 TM2D1 429063 sc-eQTL 7.85e-01 -0.0672 0.246 0.054 B_Activated L2
ENSG00000162607 USP1 -281811 sc-eQTL 6.02e-01 -0.126 0.241 0.054 B_Activated L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 4.26e-01 -0.171 0.214 0.053 CD8_TCM L2
ENSG00000125703 ATG4C -629646 sc-eQTL 5.34e-01 -0.137 0.219 0.053 CD8_TCM L2
ENSG00000132849 PATJ 412080 sc-eQTL 4.38e-01 -0.157 0.202 0.053 CD8_TCM L2
ENSG00000162604 TM2D1 429063 sc-eQTL 3.41e-01 -0.196 0.205 0.053 CD8_TCM L2
ENSG00000162607 USP1 -281811 sc-eQTL 8.11e-01 0.049 0.205 0.053 CD8_TCM L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 7.36e-01 0.0621 0.184 0.051 NK_CD56bright L2
ENSG00000125703 ATG4C -629646 sc-eQTL 9.53e-01 0.0121 0.206 0.051 NK_CD56bright L2
ENSG00000132849 PATJ 412080 sc-eQTL 9.13e-01 0.0219 0.202 0.051 NK_CD56bright L2
ENSG00000162604 TM2D1 429063 sc-eQTL 9.02e-01 -0.0252 0.205 0.051 NK_CD56bright L2
ENSG00000162607 USP1 -281811 sc-eQTL 7.63e-01 -0.0667 0.221 0.051 NK_CD56bright L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 2.36e-01 -0.211 0.177 0.05 NK_HLA L2
ENSG00000125703 ATG4C -629646 sc-eQTL 1.01e-01 -0.339 0.205 0.05 NK_HLA L2
ENSG00000132849 PATJ 412080 sc-eQTL 6.85e-01 -0.0778 0.192 0.05 NK_HLA L2
ENSG00000162604 TM2D1 429063 sc-eQTL 6.16e-01 -0.109 0.218 0.05 NK_HLA L2
ENSG00000162607 USP1 -281811 sc-eQTL 6.57e-01 -0.101 0.227 0.05 NK_HLA L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 6.99e-01 -0.105 0.27 0.052 PB L2
ENSG00000125703 ATG4C -629646 sc-eQTL 5.67e-01 -0.135 0.235 0.052 PB L2
ENSG00000132849 PATJ 412080 sc-eQTL 3.06e-01 0.25 0.244 0.052 PB L2
ENSG00000162604 TM2D1 429063 sc-eQTL 1.04e-01 -0.384 0.235 0.052 PB L2
ENSG00000162607 USP1 -281811 sc-eQTL 8.96e-01 0.0306 0.234 0.052 PB L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 5.11e-02 0.398 0.203 0.05 Pro_T L2
ENSG00000125703 ATG4C -629646 sc-eQTL 1.80e-01 0.241 0.179 0.05 Pro_T L2
ENSG00000132849 PATJ 412080 sc-eQTL 4.27e-01 0.156 0.196 0.05 Pro_T L2
ENSG00000162604 TM2D1 429063 sc-eQTL 4.29e-01 -0.173 0.219 0.05 Pro_T L2
ENSG00000162607 USP1 -281811 sc-eQTL 8.40e-01 0.025 0.124 0.05 Pro_T L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 6.59e-01 0.0907 0.205 0.051 cDC L2
ENSG00000125703 ATG4C -629646 sc-eQTL 2.36e-01 0.211 0.177 0.051 cDC L2
ENSG00000162604 TM2D1 429063 sc-eQTL 7.42e-01 -0.0731 0.222 0.051 cDC L2
ENSG00000162607 USP1 -281811 sc-eQTL 1.16e-01 0.315 0.199 0.051 cDC L2
ENSG00000116641 DOCK7 -533900 sc-eQTL 5.14e-01 -0.133 0.203 0.051 intMono L2
ENSG00000125703 ATG4C -629646 sc-eQTL 2.46e-01 -0.225 0.193 0.051 intMono L2
ENSG00000162604 TM2D1 429063 sc-eQTL 4.20e-01 0.166 0.205 0.051 intMono L2
ENSG00000162607 USP1 -281811 sc-eQTL 3.03e-01 0.224 0.217 0.051 intMono L2
ENSG00000240563 L1TD1 -40363 sc-eQTL 7.19e-01 -0.0575 0.16 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132849 PATJ 412080 eQTL 0.0404 -0.0604 0.0295 0.0 0.0 0.0402
ENSG00000132855 ANGPTL3 -443001 pQTL 0.0221 0.163 0.0711 0.00171 0.0 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina