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Genes within 1Mb (chr1:61593975:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -148431 sc-eQTL 5.02e-01 -0.0465 0.0692 0.673 B L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.50e-01 -0.0131 0.0692 0.673 B L1
ENSG00000162607 USP1 -842322 sc-eQTL 2.08e-01 0.0993 0.0786 0.673 B L1
ENSG00000132849 PATJ -148431 sc-eQTL 2.63e-01 0.0559 0.0498 0.673 CD4T L1
ENSG00000162599 NFIA 728716 sc-eQTL 6.33e-01 0.0363 0.0761 0.673 CD4T L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.24e-01 -0.0058 0.0607 0.673 CD4T L1
ENSG00000162607 USP1 -842322 sc-eQTL 9.92e-01 0.00058 0.0597 0.673 CD4T L1
ENSG00000132849 PATJ -148431 sc-eQTL 3.09e-01 0.0498 0.0488 0.673 CD8T L1
ENSG00000162599 NFIA 728716 sc-eQTL 6.50e-01 -0.0354 0.0777 0.673 CD8T L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 4.93e-01 0.0504 0.0734 0.673 CD8T L1
ENSG00000162607 USP1 -842322 sc-eQTL 4.51e-01 0.0528 0.0698 0.673 CD8T L1
ENSG00000162599 NFIA 728716 sc-eQTL 1.00e-01 -0.129 0.0783 0.671 DC L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 2.07e-01 -0.103 0.0816 0.671 DC L1
ENSG00000162607 USP1 -842322 sc-eQTL 3.47e-02 0.181 0.0849 0.671 DC L1
ENSG00000162599 NFIA 728716 sc-eQTL 2.31e-02 0.125 0.0547 0.673 Mono L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.19e-02 0.104 0.0613 0.673 Mono L1
ENSG00000162607 USP1 -842322 sc-eQTL 4.54e-01 0.0541 0.072 0.673 Mono L1
ENSG00000240563 L1TD1 -600874 sc-eQTL 3.99e-01 0.0568 0.0672 0.673 Mono L1
ENSG00000132849 PATJ -148431 sc-eQTL 5.02e-02 -0.14 0.0712 0.672 NK L1
ENSG00000162599 NFIA 728716 sc-eQTL 6.70e-01 0.0356 0.0835 0.672 NK L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.00e-01 0.121 0.0731 0.672 NK L1
ENSG00000162607 USP1 -842322 sc-eQTL 9.35e-01 0.00661 0.0814 0.672 NK L1
ENSG00000132849 PATJ -148431 sc-eQTL 3.96e-01 -0.0559 0.0658 0.673 Other_T L1
ENSG00000162599 NFIA 728716 sc-eQTL 4.85e-01 0.0602 0.086 0.673 Other_T L1
ENSG00000162604 TM2D1 -131448 sc-eQTL 6.25e-02 0.143 0.0766 0.673 Other_T L1
ENSG00000162607 USP1 -842322 sc-eQTL 7.36e-01 -0.0184 0.0544 0.673 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -148431 sc-eQTL 3.30e-01 0.084 0.086 0.658 B_Activated L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 6.22e-01 0.0541 0.109 0.658 B_Activated L2
ENSG00000162607 USP1 -842322 sc-eQTL 2.06e-01 -0.136 0.107 0.658 B_Activated L2
ENSG00000132849 PATJ -148431 sc-eQTL 5.95e-01 -0.0453 0.0849 0.674 B_Intermediate L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 6.90e-01 -0.0356 0.0891 0.674 B_Intermediate L2
ENSG00000162607 USP1 -842322 sc-eQTL 2.44e-01 -0.109 0.093 0.674 B_Intermediate L2
ENSG00000132849 PATJ -148431 sc-eQTL 5.24e-01 -0.0536 0.0841 0.67 B_Memory L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.02e-01 -0.0117 0.0946 0.67 B_Memory L2
ENSG00000162607 USP1 -842322 sc-eQTL 9.53e-02 0.162 0.0967 0.67 B_Memory L2
ENSG00000132849 PATJ -148431 sc-eQTL 9.10e-02 -0.151 0.0892 0.673 B_Naive1 L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.06e-01 -0.00977 0.0826 0.673 B_Naive1 L2
ENSG00000162607 USP1 -842322 sc-eQTL 7.32e-01 0.028 0.0815 0.673 B_Naive1 L2
ENSG00000132849 PATJ -148431 sc-eQTL 2.32e-01 0.109 0.091 0.672 B_Naive2 L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 3.53e-01 -0.0859 0.0923 0.672 B_Naive2 L2
ENSG00000162607 USP1 -842322 sc-eQTL 3.27e-02 0.196 0.0912 0.672 B_Naive2 L2
ENSG00000132849 PATJ -148431 sc-eQTL 2.29e-01 0.0886 0.0735 0.673 CD4_CTL L2
ENSG00000162599 NFIA 728716 sc-eQTL 9.20e-01 0.00897 0.0897 0.673 CD4_CTL L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 7.59e-02 -0.167 0.0935 0.673 CD4_CTL L2
ENSG00000162607 USP1 -842322 sc-eQTL 9.83e-01 0.00195 0.0938 0.673 CD4_CTL L2
ENSG00000132849 PATJ -148431 sc-eQTL 2.94e-01 0.0533 0.0506 0.673 CD4_Naive L2
ENSG00000162599 NFIA 728716 sc-eQTL 6.41e-01 -0.0372 0.0796 0.673 CD4_Naive L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.69e-01 -0.012 0.073 0.673 CD4_Naive L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.61e-01 0.0392 0.0674 0.673 CD4_Naive L2
ENSG00000132849 PATJ -148431 sc-eQTL 1.14e-01 0.1 0.063 0.673 CD4_TCM L2
ENSG00000162599 NFIA 728716 sc-eQTL 8.71e-01 -0.0139 0.0852 0.673 CD4_TCM L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 7.41e-01 -0.0245 0.0739 0.673 CD4_TCM L2
ENSG00000162607 USP1 -842322 sc-eQTL 3.33e-01 -0.0739 0.0762 0.673 CD4_TCM L2
ENSG00000132849 PATJ -148431 sc-eQTL 5.32e-01 -0.052 0.083 0.673 CD4_TEM L2
ENSG00000162599 NFIA 728716 sc-eQTL 3.06e-02 0.199 0.0915 0.673 CD4_TEM L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.02e-01 -0.022 0.0874 0.673 CD4_TEM L2
ENSG00000162607 USP1 -842322 sc-eQTL 3.03e-01 -0.0897 0.0869 0.673 CD4_TEM L2
ENSG00000132849 PATJ -148431 sc-eQTL 3.16e-02 0.186 0.0859 0.673 CD8_CTL L2
ENSG00000162599 NFIA 728716 sc-eQTL 3.87e-01 -0.0794 0.0916 0.673 CD8_CTL L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.35e-02 0.196 0.0786 0.673 CD8_CTL L2
ENSG00000162607 USP1 -842322 sc-eQTL 3.45e-01 0.0807 0.0853 0.673 CD8_CTL L2
ENSG00000132849 PATJ -148431 sc-eQTL 3.20e-01 0.0678 0.068 0.673 CD8_Naive L2
ENSG00000162599 NFIA 728716 sc-eQTL 7.48e-01 -0.0286 0.0889 0.673 CD8_Naive L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 6.09e-01 -0.0426 0.0832 0.673 CD8_Naive L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.80e-01 0.0422 0.0762 0.673 CD8_Naive L2
ENSG00000132849 PATJ -148431 sc-eQTL 1.56e-01 0.125 0.0876 0.669 CD8_TCM L2
ENSG00000162599 NFIA 728716 sc-eQTL 4.31e-01 0.0747 0.0946 0.669 CD8_TCM L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 4.88e-01 0.0621 0.0894 0.669 CD8_TCM L2
ENSG00000162607 USP1 -842322 sc-eQTL 4.45e-01 -0.0684 0.0893 0.669 CD8_TCM L2
ENSG00000132849 PATJ -148431 sc-eQTL 6.29e-01 -0.0457 0.0945 0.685 CD8_TEM L2
ENSG00000162599 NFIA 728716 sc-eQTL 3.82e-01 -0.0856 0.0977 0.685 CD8_TEM L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 7.94e-01 0.0252 0.0963 0.685 CD8_TEM L2
ENSG00000162607 USP1 -842322 sc-eQTL 9.53e-03 0.248 0.0948 0.685 CD8_TEM L2
ENSG00000132849 PATJ -148431 sc-eQTL 6.85e-01 -0.0317 0.0779 0.675 MAIT L2
ENSG00000162599 NFIA 728716 sc-eQTL 6.69e-01 -0.0383 0.0896 0.675 MAIT L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 3.33e-01 0.0857 0.0884 0.675 MAIT L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.25e-01 0.0582 0.0915 0.675 MAIT L2
ENSG00000132849 PATJ -148431 sc-eQTL 8.14e-02 -0.161 0.0919 0.671 NK_CD56bright L2
ENSG00000162599 NFIA 728716 sc-eQTL 4.76e-04 -0.318 0.0896 0.671 NK_CD56bright L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 2.12e-01 -0.117 0.0938 0.671 NK_CD56bright L2
ENSG00000162607 USP1 -842322 sc-eQTL 1.40e-01 0.149 0.101 0.671 NK_CD56bright L2
ENSG00000132849 PATJ -148431 sc-eQTL 5.90e-02 -0.169 0.0889 0.67 NK_CD56dim L2
ENSG00000162599 NFIA 728716 sc-eQTL 3.02e-01 0.0931 0.0899 0.67 NK_CD56dim L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 2.69e-01 0.0941 0.0848 0.67 NK_CD56dim L2
ENSG00000162607 USP1 -842322 sc-eQTL 2.76e-01 -0.0993 0.0909 0.67 NK_CD56dim L2
ENSG00000132849 PATJ -148431 sc-eQTL 7.16e-01 0.0321 0.0881 0.671 NK_HLA L2
ENSG00000162599 NFIA 728716 sc-eQTL 1.78e-02 0.221 0.0923 0.671 NK_HLA L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 7.73e-01 0.0289 0.1 0.671 NK_HLA L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.55e-02 0.199 0.103 0.671 NK_HLA L2
ENSG00000132849 PATJ -148431 sc-eQTL 2.98e-01 -0.0956 0.0916 0.67 NK_cytokine L2
ENSG00000162599 NFIA 728716 sc-eQTL 1.78e-01 0.121 0.0898 0.67 NK_cytokine L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 6.07e-02 0.168 0.0891 0.67 NK_cytokine L2
ENSG00000162607 USP1 -842322 sc-eQTL 7.72e-01 0.0275 0.0948 0.67 NK_cytokine L2
ENSG00000132849 PATJ -148431 sc-eQTL 8.01e-01 -0.027 0.107 0.659 PB L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.70e-02 -0.171 0.102 0.659 PB L2
ENSG00000162607 USP1 -842322 sc-eQTL 3.02e-01 0.105 0.102 0.659 PB L2
ENSG00000132849 PATJ -148431 sc-eQTL 9.48e-01 0.0055 0.0841 0.674 Pro_T L2
ENSG00000162599 NFIA 728716 sc-eQTL 1.16e-01 0.133 0.0847 0.674 Pro_T L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.91e-01 0.123 0.0938 0.674 Pro_T L2
ENSG00000162607 USP1 -842322 sc-eQTL 2.77e-01 -0.0577 0.053 0.674 Pro_T L2
ENSG00000132849 PATJ -148431 sc-eQTL 8.67e-01 -0.0141 0.0836 0.673 Treg L2
ENSG00000162599 NFIA 728716 sc-eQTL 9.62e-01 -0.00423 0.0888 0.673 Treg L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.84e-01 0.122 0.0918 0.673 Treg L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.73e-01 0.0515 0.0913 0.673 Treg L2
ENSG00000162599 NFIA 728716 sc-eQTL 9.14e-02 -0.143 0.0844 0.678 cDC L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 4.10e-01 -0.0826 0.1 0.678 cDC L2
ENSG00000162607 USP1 -842322 sc-eQTL 8.91e-01 0.0125 0.0905 0.678 cDC L2
ENSG00000162599 NFIA 728716 sc-eQTL 1.23e-02 0.149 0.0589 0.673 cMono_IL1B L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.00e-01 0.108 0.0655 0.673 cMono_IL1B L2
ENSG00000162607 USP1 -842322 sc-eQTL 7.99e-01 -0.0204 0.0799 0.673 cMono_IL1B L2
ENSG00000240563 L1TD1 -600874 sc-eQTL 8.11e-01 0.0192 0.0802 0.673 cMono_IL1B L2
ENSG00000162599 NFIA 728716 sc-eQTL 1.73e-01 0.0894 0.0653 0.673 cMono_S100A L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 3.36e-01 -0.0756 0.0784 0.673 cMono_S100A L2
ENSG00000162607 USP1 -842322 sc-eQTL 1.85e-01 0.118 0.089 0.673 cMono_S100A L2
ENSG00000240563 L1TD1 -600874 sc-eQTL 5.46e-01 0.045 0.0743 0.673 cMono_S100A L2
ENSG00000132849 PATJ -148431 sc-eQTL 6.75e-01 -0.0444 0.106 0.679 gdT L2
ENSG00000162599 NFIA 728716 sc-eQTL 4.95e-01 -0.074 0.108 0.679 gdT L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.54e-01 -0.0205 0.111 0.679 gdT L2
ENSG00000162607 USP1 -842322 sc-eQTL 8.91e-01 -0.0149 0.109 0.679 gdT L2
ENSG00000162599 NFIA 728716 sc-eQTL 8.01e-01 -0.0215 0.0852 0.673 intMono L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 3.71e-01 0.0843 0.0941 0.673 intMono L2
ENSG00000162607 USP1 -842322 sc-eQTL 5.91e-01 -0.0537 0.0997 0.673 intMono L2
ENSG00000240563 L1TD1 -600874 sc-eQTL 8.33e-01 -0.0155 0.0734 0.673 intMono L2
ENSG00000162599 NFIA 728716 sc-eQTL 7.66e-01 0.0278 0.0935 0.679 ncMono L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 1.03e-01 0.154 0.0942 0.679 ncMono L2
ENSG00000162607 USP1 -842322 sc-eQTL 7.99e-01 -0.024 0.094 0.679 ncMono L2
ENSG00000240563 L1TD1 -600874 sc-eQTL 6.93e-01 -0.0263 0.0666 0.679 ncMono L2
ENSG00000162599 NFIA 728716 sc-eQTL 2.15e-01 -0.116 0.0932 0.675 pDC L2
ENSG00000162604 TM2D1 -131448 sc-eQTL 9.28e-01 -0.00859 0.095 0.675 pDC L2
ENSG00000162607 USP1 -842322 sc-eQTL 1.15e-01 0.174 0.11 0.675 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -148431 sc-eQTL 6.51e-01 -0.0344 0.0758 0.673 B_Memory LOneK1K
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.24e-01 0.0192 0.0861 0.673 B_Memory LOneK1K
ENSG00000162607 USP1 -842322 sc-eQTL 6.35e-01 -0.0415 0.0873 0.673 B_Memory LOneK1K
ENSG00000132849 PATJ -148431 sc-eQTL 3.57e-01 -0.0744 0.0805 0.673 B_Naive LOneK1K
ENSG00000162604 TM2D1 -131448 sc-eQTL 8.25e-01 -0.017 0.077 0.673 B_Naive LOneK1K
ENSG00000162607 USP1 -842322 sc-eQTL 1.87e-01 0.108 0.0816 0.673 B_Naive LOneK1K
ENSG00000162599 NFIA 728716 sc-eQTL 8.43e-03 0.148 0.0558 0.673 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -131448 sc-eQTL 3.81e-01 0.0543 0.0618 0.673 CD14_Mono LOneK1K
ENSG00000162607 USP1 -842322 sc-eQTL 8.02e-01 0.0189 0.075 0.673 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -600874 sc-eQTL 7.61e-01 0.0248 0.0813 0.673 CD14_Mono LOneK1K
ENSG00000162599 NFIA 728716 sc-eQTL 3.48e-01 -0.0747 0.0794 0.675 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -131448 sc-eQTL 7.67e-02 0.167 0.0936 0.675 CD16_Mono LOneK1K
ENSG00000162607 USP1 -842322 sc-eQTL 7.37e-01 -0.0295 0.088 0.675 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -600874 sc-eQTL 5.00e-01 -0.0405 0.06 0.675 CD16_Mono LOneK1K
ENSG00000132849 PATJ -148431 sc-eQTL 9.38e-02 -0.139 0.0828 0.67 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 728716 sc-eQTL 3.27e-01 0.0837 0.0851 0.67 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -131448 sc-eQTL 4.95e-02 0.149 0.0757 0.67 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -842322 sc-eQTL 4.38e-01 -0.0646 0.0831 0.67 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132849 PATJ -148431 eQTL 0.0179 -0.029 0.0122 0.0 0.0 0.337

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina