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Genes within 1Mb (chr1:61511609:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -230797 sc-eQTL 9.21e-01 -0.0071 0.0711 0.35 B L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 4.02e-01 -0.0596 0.0709 0.35 B L1
ENSG00000162607 USP1 -924688 sc-eQTL 6.55e-01 0.0362 0.0809 0.35 B L1
ENSG00000132849 PATJ -230797 sc-eQTL 1.80e-01 0.0676 0.0503 0.35 CD4T L1
ENSG00000162599 NFIA 646350 sc-eQTL 4.15e-01 0.0628 0.0769 0.35 CD4T L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 4.67e-01 -0.0447 0.0613 0.35 CD4T L1
ENSG00000162607 USP1 -924688 sc-eQTL 1.24e-02 0.15 0.0595 0.35 CD4T L1
ENSG00000132849 PATJ -230797 sc-eQTL 3.90e-01 0.0421 0.0488 0.35 CD8T L1
ENSG00000162599 NFIA 646350 sc-eQTL 5.49e-01 -0.0467 0.0777 0.35 CD8T L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.38e-01 -0.0246 0.0734 0.35 CD8T L1
ENSG00000162607 USP1 -924688 sc-eQTL 4.44e-01 0.0535 0.0698 0.35 CD8T L1
ENSG00000162599 NFIA 646350 sc-eQTL 8.95e-01 -0.0103 0.0782 0.347 DC L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 9.08e-01 -0.00936 0.0814 0.347 DC L1
ENSG00000162607 USP1 -924688 sc-eQTL 4.34e-01 0.0667 0.0851 0.347 DC L1
ENSG00000162599 NFIA 646350 sc-eQTL 4.22e-01 0.0454 0.0564 0.35 Mono L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 3.30e-01 0.0612 0.0627 0.35 Mono L1
ENSG00000162607 USP1 -924688 sc-eQTL 9.36e-01 0.0059 0.0735 0.35 Mono L1
ENSG00000240563 L1TD1 -683240 sc-eQTL 7.15e-01 -0.0251 0.0686 0.35 Mono L1
ENSG00000132849 PATJ -230797 sc-eQTL 7.06e-01 0.0271 0.0718 0.35 NK L1
ENSG00000162599 NFIA 646350 sc-eQTL 5.70e-01 -0.0474 0.0835 0.35 NK L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 3.27e-01 0.0721 0.0734 0.35 NK L1
ENSG00000162607 USP1 -924688 sc-eQTL 9.02e-01 0.01 0.0814 0.35 NK L1
ENSG00000132849 PATJ -230797 sc-eQTL 1.60e-01 0.0945 0.067 0.35 Other_T L1
ENSG00000162599 NFIA 646350 sc-eQTL 5.58e-01 0.0516 0.0879 0.35 Other_T L1
ENSG00000162604 TM2D1 -213814 sc-eQTL 1.61e-01 0.11 0.0786 0.35 Other_T L1
ENSG00000162607 USP1 -924688 sc-eQTL 1.30e-01 0.0841 0.0552 0.35 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -230797 sc-eQTL 7.14e-01 0.0318 0.0866 0.362 B_Activated L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 8.10e-01 0.0265 0.11 0.362 B_Activated L2
ENSG00000162607 USP1 -924688 sc-eQTL 8.52e-01 0.0202 0.108 0.362 B_Activated L2
ENSG00000132849 PATJ -230797 sc-eQTL 8.46e-01 -0.0168 0.0866 0.352 B_Intermediate L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 9.42e-01 0.00662 0.0909 0.352 B_Intermediate L2
ENSG00000162607 USP1 -924688 sc-eQTL 7.97e-02 -0.166 0.0945 0.352 B_Intermediate L2
ENSG00000132849 PATJ -230797 sc-eQTL 6.12e-01 0.0445 0.0875 0.353 B_Memory L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 6.25e-01 -0.0481 0.0983 0.353 B_Memory L2
ENSG00000162607 USP1 -924688 sc-eQTL 9.87e-01 -0.00161 0.101 0.353 B_Memory L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.80e-01 -0.0802 0.0913 0.35 B_Naive1 L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 3.47e-01 -0.0791 0.0839 0.35 B_Naive1 L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.25e-01 0.0816 0.0828 0.35 B_Naive1 L2
ENSG00000132849 PATJ -230797 sc-eQTL 1.69e-01 -0.129 0.0934 0.352 B_Naive2 L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 9.03e-01 0.0115 0.0949 0.352 B_Naive2 L2
ENSG00000162607 USP1 -924688 sc-eQTL 2.63e-02 0.209 0.0935 0.352 B_Naive2 L2
ENSG00000132849 PATJ -230797 sc-eQTL 8.71e-01 0.0122 0.0747 0.348 CD4_CTL L2
ENSG00000162599 NFIA 646350 sc-eQTL 1.73e-01 0.124 0.0904 0.348 CD4_CTL L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 6.73e-01 -0.0403 0.0954 0.348 CD4_CTL L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.12e-01 0.0959 0.0947 0.348 CD4_CTL L2
ENSG00000132849 PATJ -230797 sc-eQTL 4.29e-01 0.0404 0.051 0.35 CD4_Naive L2
ENSG00000162599 NFIA 646350 sc-eQTL 3.16e-01 0.0805 0.0801 0.35 CD4_Naive L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.22e-01 -0.0262 0.0735 0.35 CD4_Naive L2
ENSG00000162607 USP1 -924688 sc-eQTL 7.03e-03 0.182 0.0668 0.35 CD4_Naive L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.37e-01 0.0617 0.0641 0.35 CD4_TCM L2
ENSG00000162599 NFIA 646350 sc-eQTL 7.17e-01 -0.0313 0.0863 0.35 CD4_TCM L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 8.59e-01 -0.0133 0.0749 0.35 CD4_TCM L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.74e-01 0.0687 0.0772 0.35 CD4_TCM L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.74e-01 0.0756 0.0848 0.35 CD4_TEM L2
ENSG00000162599 NFIA 646350 sc-eQTL 1.80e-01 0.127 0.0943 0.35 CD4_TEM L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 4.66e-01 -0.0652 0.0893 0.35 CD4_TEM L2
ENSG00000162607 USP1 -924688 sc-eQTL 8.26e-01 -0.0196 0.0891 0.35 CD4_TEM L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.08e-01 0.0898 0.0878 0.35 CD8_CTL L2
ENSG00000162599 NFIA 646350 sc-eQTL 3.73e-01 0.0828 0.0928 0.35 CD8_CTL L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.12e-01 0.0298 0.0807 0.35 CD8_CTL L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.33e-01 0.0839 0.0864 0.35 CD8_CTL L2
ENSG00000132849 PATJ -230797 sc-eQTL 7.84e-01 0.0191 0.0696 0.35 CD8_Naive L2
ENSG00000162599 NFIA 646350 sc-eQTL 6.10e-01 -0.0464 0.0908 0.35 CD8_Naive L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 1.75e-01 -0.115 0.0847 0.35 CD8_Naive L2
ENSG00000162607 USP1 -924688 sc-eQTL 1.48e-01 0.113 0.0776 0.35 CD8_Naive L2
ENSG00000132849 PATJ -230797 sc-eQTL 6.59e-03 0.245 0.0892 0.35 CD8_TCM L2
ENSG00000162599 NFIA 646350 sc-eQTL 4.69e-01 0.071 0.0978 0.35 CD8_TCM L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.03e-02 0.167 0.0917 0.35 CD8_TCM L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.77e-01 -0.0817 0.0923 0.35 CD8_TCM L2
ENSG00000132849 PATJ -230797 sc-eQTL 9.70e-01 -0.00361 0.0953 0.356 CD8_TEM L2
ENSG00000162599 NFIA 646350 sc-eQTL 9.04e-01 -0.0119 0.0986 0.356 CD8_TEM L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 8.26e-01 0.0213 0.097 0.356 CD8_TEM L2
ENSG00000162607 USP1 -924688 sc-eQTL 5.54e-01 -0.0575 0.0971 0.356 CD8_TEM L2
ENSG00000132849 PATJ -230797 sc-eQTL 6.28e-01 0.0382 0.0788 0.348 MAIT L2
ENSG00000162599 NFIA 646350 sc-eQTL 2.50e-01 0.104 0.0904 0.348 MAIT L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 2.13e-02 0.205 0.0885 0.348 MAIT L2
ENSG00000162607 USP1 -924688 sc-eQTL 9.66e-01 -0.00393 0.0926 0.348 MAIT L2
ENSG00000132849 PATJ -230797 sc-eQTL 1.16e-01 -0.144 0.0915 0.347 NK_CD56bright L2
ENSG00000162599 NFIA 646350 sc-eQTL 1.00e-02 -0.235 0.0903 0.347 NK_CD56bright L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.61e-01 0.0285 0.0936 0.347 NK_CD56bright L2
ENSG00000162607 USP1 -924688 sc-eQTL 5.19e-01 -0.0651 0.101 0.347 NK_CD56bright L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.86e-01 0.0779 0.0897 0.349 NK_CD56dim L2
ENSG00000162599 NFIA 646350 sc-eQTL 5.18e-01 -0.0585 0.0903 0.349 NK_CD56dim L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 3.21e-01 0.0846 0.0851 0.349 NK_CD56dim L2
ENSG00000162607 USP1 -924688 sc-eQTL 7.05e-01 -0.0347 0.0914 0.349 NK_CD56dim L2
ENSG00000132849 PATJ -230797 sc-eQTL 9.63e-01 -0.00412 0.0881 0.34 NK_HLA L2
ENSG00000162599 NFIA 646350 sc-eQTL 5.11e-01 0.0615 0.0934 0.34 NK_HLA L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 6.94e-01 0.0394 0.1 0.34 NK_HLA L2
ENSG00000162607 USP1 -924688 sc-eQTL 1.47e-01 -0.151 0.104 0.34 NK_HLA L2
ENSG00000132849 PATJ -230797 sc-eQTL 4.54e-01 -0.0687 0.0916 0.349 NK_cytokine L2
ENSG00000162599 NFIA 646350 sc-eQTL 2.30e-01 0.108 0.0897 0.349 NK_cytokine L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 5.27e-01 -0.0568 0.0896 0.349 NK_cytokine L2
ENSG00000162607 USP1 -924688 sc-eQTL 8.49e-01 0.0181 0.0947 0.349 NK_cytokine L2
ENSG00000132849 PATJ -230797 sc-eQTL 3.67e-01 0.101 0.111 0.378 PB L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 2.06e-01 -0.136 0.107 0.378 PB L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.59e-01 -0.098 0.106 0.378 PB L2
ENSG00000132849 PATJ -230797 sc-eQTL 6.74e-01 -0.0372 0.0883 0.348 Pro_T L2
ENSG00000162599 NFIA 646350 sc-eQTL 7.75e-01 0.0256 0.0895 0.348 Pro_T L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 9.09e-01 -0.0114 0.099 0.348 Pro_T L2
ENSG00000162607 USP1 -924688 sc-eQTL 3.22e-01 0.0553 0.0557 0.348 Pro_T L2
ENSG00000132849 PATJ -230797 sc-eQTL 4.87e-01 -0.0589 0.0845 0.35 Treg L2
ENSG00000162599 NFIA 646350 sc-eQTL 9.02e-01 0.0111 0.0899 0.35 Treg L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 8.13e-01 0.0221 0.0932 0.35 Treg L2
ENSG00000162607 USP1 -924688 sc-eQTL 8.78e-01 0.0142 0.0924 0.35 Treg L2
ENSG00000162599 NFIA 646350 sc-eQTL 5.54e-01 -0.049 0.0827 0.356 cDC L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.27e-01 0.0341 0.0975 0.356 cDC L2
ENSG00000162607 USP1 -924688 sc-eQTL 4.43e-01 -0.0677 0.0879 0.356 cDC L2
ENSG00000162599 NFIA 646350 sc-eQTL 1.20e-01 0.0925 0.0593 0.35 cMono_IL1B L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 6.55e-01 0.0294 0.0658 0.35 cMono_IL1B L2
ENSG00000162607 USP1 -924688 sc-eQTL 6.35e-01 0.0379 0.0797 0.35 cMono_IL1B L2
ENSG00000240563 L1TD1 -683240 sc-eQTL 6.18e-01 0.04 0.0801 0.35 cMono_IL1B L2
ENSG00000162599 NFIA 646350 sc-eQTL 6.28e-01 -0.0321 0.0662 0.35 cMono_S100A L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 9.18e-01 0.00817 0.0793 0.35 cMono_S100A L2
ENSG00000162607 USP1 -924688 sc-eQTL 4.09e-01 0.0744 0.09 0.35 cMono_S100A L2
ENSG00000240563 L1TD1 -683240 sc-eQTL 8.67e-01 -0.0126 0.075 0.35 cMono_S100A L2
ENSG00000132849 PATJ -230797 sc-eQTL 5.05e-01 0.069 0.103 0.348 gdT L2
ENSG00000162599 NFIA 646350 sc-eQTL 7.42e-02 -0.188 0.105 0.348 gdT L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 6.63e-01 -0.0475 0.109 0.348 gdT L2
ENSG00000162607 USP1 -924688 sc-eQTL 9.41e-01 -0.00785 0.106 0.348 gdT L2
ENSG00000162599 NFIA 646350 sc-eQTL 3.18e-01 -0.0829 0.0828 0.349 intMono L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.66e-01 -0.0274 0.0919 0.349 intMono L2
ENSG00000162607 USP1 -924688 sc-eQTL 9.40e-01 -0.00735 0.0972 0.349 intMono L2
ENSG00000240563 L1TD1 -683240 sc-eQTL 4.73e-01 0.0513 0.0714 0.349 intMono L2
ENSG00000162599 NFIA 646350 sc-eQTL 8.04e-01 -0.0232 0.0934 0.351 ncMono L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.01e-02 0.171 0.094 0.351 ncMono L2
ENSG00000162607 USP1 -924688 sc-eQTL 1.38e-01 -0.139 0.0934 0.351 ncMono L2
ENSG00000240563 L1TD1 -683240 sc-eQTL 1.11e-01 -0.106 0.0662 0.351 ncMono L2
ENSG00000162599 NFIA 646350 sc-eQTL 3.98e-01 -0.0758 0.0894 0.359 pDC L2
ENSG00000162604 TM2D1 -213814 sc-eQTL 5.89e-01 -0.0493 0.0909 0.359 pDC L2
ENSG00000162607 USP1 -924688 sc-eQTL 1.28e-01 0.162 0.106 0.359 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -230797 sc-eQTL 4.91e-01 0.0539 0.0782 0.35 B_Memory LOneK1K
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.58e-01 -0.0274 0.0888 0.35 B_Memory LOneK1K
ENSG00000162607 USP1 -924688 sc-eQTL 5.02e-01 -0.0606 0.09 0.35 B_Memory LOneK1K
ENSG00000132849 PATJ -230797 sc-eQTL 2.62e-01 -0.0923 0.0821 0.35 B_Naive LOneK1K
ENSG00000162604 TM2D1 -213814 sc-eQTL 4.57e-01 -0.0585 0.0784 0.35 B_Naive LOneK1K
ENSG00000162607 USP1 -924688 sc-eQTL 1.33e-01 0.125 0.0831 0.35 B_Naive LOneK1K
ENSG00000162599 NFIA 646350 sc-eQTL 2.88e-01 0.0602 0.0565 0.35 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -213814 sc-eQTL 5.23e-01 0.0395 0.0617 0.35 CD14_Mono LOneK1K
ENSG00000162607 USP1 -924688 sc-eQTL 3.63e-01 0.0681 0.0747 0.35 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -683240 sc-eQTL 5.35e-01 0.0504 0.0811 0.35 CD14_Mono LOneK1K
ENSG00000162599 NFIA 646350 sc-eQTL 2.08e-01 -0.0993 0.0785 0.349 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -213814 sc-eQTL 1.34e-01 0.14 0.0929 0.349 CD16_Mono LOneK1K
ENSG00000162607 USP1 -924688 sc-eQTL 2.03e-01 -0.111 0.0868 0.349 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -683240 sc-eQTL 4.46e-01 -0.0453 0.0594 0.349 CD16_Mono LOneK1K
ENSG00000132849 PATJ -230797 sc-eQTL 5.02e-01 0.0561 0.0834 0.349 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 646350 sc-eQTL 7.48e-01 0.0276 0.0855 0.349 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -213814 sc-eQTL 7.68e-01 0.0226 0.0765 0.349 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -924688 sc-eQTL 8.77e-01 0.0129 0.0833 0.349 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132849 PATJ -230797 eQTL 0.0697 -0.0225 0.0124 0.00167 0.0 0.335

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 PATJ -230797 1.27e-06 1.09e-06 2.99e-07 1.25e-06 3.69e-07 5.98e-07 1.48e-06 3.99e-07 1.47e-06 6.24e-07 1.85e-06 8.37e-07 2.51e-06 2.59e-07 5.01e-07 9.57e-07 9.26e-07 8.27e-07 7.7e-07 5.13e-07 7.54e-07 1.8e-06 1.04e-06 5.58e-07 2.25e-06 6.9e-07 9.54e-07 8.92e-07 1.61e-06 1.22e-06 7.32e-07 2.61e-07 2.79e-07 6.27e-07 5.34e-07 4.9e-07 7.4e-07 3.07e-07 4.41e-07 2.94e-07 3.57e-07 1.68e-06 1.41e-07 1.06e-07 2.99e-07 2.15e-07 2.26e-07 1.41e-07 1.9e-07