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Genes within 1Mb (chr1:61490357:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -252049 sc-eQTL 5.89e-01 0.0361 0.0667 0.66 B L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 4.90e-01 -0.0461 0.0666 0.66 B L1
ENSG00000162607 USP1 -945940 sc-eQTL 8.14e-01 -0.0179 0.076 0.66 B L1
ENSG00000132849 PATJ -252049 sc-eQTL 3.76e-01 0.0433 0.0488 0.66 CD4T L1
ENSG00000162599 NFIA 625098 sc-eQTL 1.28e-01 0.113 0.0741 0.66 CD4T L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 4.36e-01 -0.0463 0.0594 0.66 CD4T L1
ENSG00000162607 USP1 -945940 sc-eQTL 3.17e-01 0.0585 0.0583 0.66 CD4T L1
ENSG00000132849 PATJ -252049 sc-eQTL 6.19e-02 0.0876 0.0467 0.66 CD8T L1
ENSG00000162599 NFIA 625098 sc-eQTL 8.96e-01 -0.00978 0.0748 0.66 CD8T L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.95e-01 -0.0376 0.0706 0.66 CD8T L1
ENSG00000162607 USP1 -945940 sc-eQTL 5.85e-01 0.0368 0.0672 0.66 CD8T L1
ENSG00000162599 NFIA 625098 sc-eQTL 8.05e-01 -0.0188 0.0763 0.646 DC L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 8.62e-01 0.0138 0.0794 0.646 DC L1
ENSG00000162607 USP1 -945940 sc-eQTL 2.99e-01 0.0863 0.0829 0.646 DC L1
ENSG00000162599 NFIA 625098 sc-eQTL 6.68e-01 0.0233 0.0543 0.66 Mono L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 9.79e-01 0.0016 0.0605 0.66 Mono L1
ENSG00000162607 USP1 -945940 sc-eQTL 7.59e-01 0.0217 0.0707 0.66 Mono L1
ENSG00000240563 L1TD1 -704492 sc-eQTL 2.18e-01 -0.0812 0.0657 0.66 Mono L1
ENSG00000132849 PATJ -252049 sc-eQTL 1.91e-01 -0.0908 0.0692 0.659 NK L1
ENSG00000162599 NFIA 625098 sc-eQTL 9.68e-01 -0.00322 0.0808 0.659 NK L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 3.96e-01 0.0604 0.071 0.659 NK L1
ENSG00000162607 USP1 -945940 sc-eQTL 7.40e-01 0.0261 0.0787 0.659 NK L1
ENSG00000132849 PATJ -252049 sc-eQTL 5.35e-01 0.0395 0.0635 0.66 Other_T L1
ENSG00000162599 NFIA 625098 sc-eQTL 1.43e-01 0.122 0.0827 0.66 Other_T L1
ENSG00000162604 TM2D1 -235066 sc-eQTL 6.03e-01 -0.0388 0.0745 0.66 Other_T L1
ENSG00000162607 USP1 -945940 sc-eQTL 3.88e-01 0.0453 0.0524 0.66 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -252049 sc-eQTL 1.89e-02 0.196 0.0828 0.671 B_Activated L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.87e-01 0.141 0.106 0.671 B_Activated L2
ENSG00000162607 USP1 -945940 sc-eQTL 6.46e-01 0.0482 0.105 0.671 B_Activated L2
ENSG00000132849 PATJ -252049 sc-eQTL 7.25e-01 0.0292 0.083 0.663 B_Intermediate L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 2.57e-01 0.0987 0.0869 0.663 B_Intermediate L2
ENSG00000162607 USP1 -945940 sc-eQTL 2.35e-01 -0.108 0.0909 0.663 B_Intermediate L2
ENSG00000132849 PATJ -252049 sc-eQTL 2.74e-01 -0.0899 0.0819 0.659 B_Memory L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.57e-01 0.131 0.0918 0.659 B_Memory L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.10e-01 0.0354 0.0949 0.659 B_Memory L2
ENSG00000132849 PATJ -252049 sc-eQTL 6.83e-01 0.0354 0.0866 0.66 B_Naive1 L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.62e-01 -0.111 0.0793 0.66 B_Naive1 L2
ENSG00000162607 USP1 -945940 sc-eQTL 8.33e-01 -0.0166 0.0786 0.66 B_Naive1 L2
ENSG00000132849 PATJ -252049 sc-eQTL 8.65e-01 -0.0153 0.09 0.661 B_Naive2 L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 8.61e-01 -0.0159 0.0911 0.661 B_Naive2 L2
ENSG00000162607 USP1 -945940 sc-eQTL 1.61e-01 0.127 0.0904 0.661 B_Naive2 L2
ENSG00000132849 PATJ -252049 sc-eQTL 4.87e-01 0.051 0.0731 0.657 CD4_CTL L2
ENSG00000162599 NFIA 625098 sc-eQTL 4.15e-01 0.0725 0.0889 0.657 CD4_CTL L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 3.10e-01 -0.095 0.0934 0.657 CD4_CTL L2
ENSG00000162607 USP1 -945940 sc-eQTL 4.72e-01 -0.067 0.0929 0.657 CD4_CTL L2
ENSG00000132849 PATJ -252049 sc-eQTL 3.50e-01 0.0462 0.0494 0.66 CD4_Naive L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.14e-01 0.123 0.0772 0.66 CD4_Naive L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.97e-01 -0.0377 0.0712 0.66 CD4_Naive L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.11e-02 0.118 0.0653 0.66 CD4_Naive L2
ENSG00000132849 PATJ -252049 sc-eQTL 9.93e-01 -0.000516 0.0617 0.66 CD4_TCM L2
ENSG00000162599 NFIA 625098 sc-eQTL 9.02e-01 -0.0102 0.083 0.66 CD4_TCM L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 6.14e-01 0.0364 0.072 0.66 CD4_TCM L2
ENSG00000162607 USP1 -945940 sc-eQTL 3.85e-01 0.0646 0.0742 0.66 CD4_TCM L2
ENSG00000132849 PATJ -252049 sc-eQTL 6.11e-02 0.151 0.08 0.66 CD4_TEM L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.80e-01 0.12 0.0894 0.66 CD4_TEM L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 7.23e-01 -0.0301 0.0849 0.66 CD4_TEM L2
ENSG00000162607 USP1 -945940 sc-eQTL 1.89e-02 -0.198 0.0835 0.66 CD4_TEM L2
ENSG00000132849 PATJ -252049 sc-eQTL 1.12e-01 0.136 0.0851 0.66 CD8_CTL L2
ENSG00000162599 NFIA 625098 sc-eQTL 7.32e-01 0.031 0.0904 0.66 CD8_CTL L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.81e-01 -0.0434 0.0785 0.66 CD8_CTL L2
ENSG00000162607 USP1 -945940 sc-eQTL 8.18e-02 0.146 0.0836 0.66 CD8_CTL L2
ENSG00000132849 PATJ -252049 sc-eQTL 2.41e-01 0.0796 0.0677 0.66 CD8_Naive L2
ENSG00000162599 NFIA 625098 sc-eQTL 2.99e-01 -0.092 0.0884 0.66 CD8_Naive L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 4.48e-01 -0.0631 0.0829 0.66 CD8_Naive L2
ENSG00000162607 USP1 -945940 sc-eQTL 5.54e-01 0.045 0.076 0.66 CD8_Naive L2
ENSG00000132849 PATJ -252049 sc-eQTL 2.36e-01 0.105 0.0882 0.657 CD8_TCM L2
ENSG00000162599 NFIA 625098 sc-eQTL 3.70e-01 0.0855 0.0952 0.657 CD8_TCM L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.09e-01 0.144 0.0895 0.657 CD8_TCM L2
ENSG00000162607 USP1 -945940 sc-eQTL 8.53e-01 0.0167 0.09 0.657 CD8_TCM L2
ENSG00000132849 PATJ -252049 sc-eQTL 5.92e-01 -0.0505 0.0942 0.667 CD8_TEM L2
ENSG00000162599 NFIA 625098 sc-eQTL 9.75e-01 0.00302 0.0976 0.667 CD8_TEM L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 9.96e-02 0.158 0.0953 0.667 CD8_TEM L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.44e-01 0.0314 0.0961 0.667 CD8_TEM L2
ENSG00000132849 PATJ -252049 sc-eQTL 5.64e-01 0.044 0.0761 0.66 MAIT L2
ENSG00000162599 NFIA 625098 sc-eQTL 5.21e-02 0.17 0.0868 0.66 MAIT L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 6.32e-01 0.0414 0.0865 0.66 MAIT L2
ENSG00000162607 USP1 -945940 sc-eQTL 1.73e-01 -0.122 0.0891 0.66 MAIT L2
ENSG00000132849 PATJ -252049 sc-eQTL 3.55e-01 -0.0813 0.0876 0.653 NK_CD56bright L2
ENSG00000162599 NFIA 625098 sc-eQTL 3.26e-01 -0.086 0.0874 0.653 NK_CD56bright L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 4.36e-01 0.0696 0.0892 0.653 NK_CD56bright L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.18e-01 0.0348 0.0961 0.653 NK_CD56bright L2
ENSG00000132849 PATJ -252049 sc-eQTL 6.70e-01 0.0366 0.086 0.657 NK_CD56dim L2
ENSG00000162599 NFIA 625098 sc-eQTL 6.46e-01 -0.0398 0.0865 0.657 NK_CD56dim L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 8.40e-01 0.0165 0.0816 0.657 NK_CD56dim L2
ENSG00000162607 USP1 -945940 sc-eQTL 9.32e-01 0.00743 0.0875 0.657 NK_CD56dim L2
ENSG00000132849 PATJ -252049 sc-eQTL 2.85e-01 -0.089 0.0831 0.651 NK_HLA L2
ENSG00000162599 NFIA 625098 sc-eQTL 4.10e-01 0.073 0.0883 0.651 NK_HLA L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.75e-01 -0.0532 0.0946 0.651 NK_HLA L2
ENSG00000162607 USP1 -945940 sc-eQTL 3.67e-01 -0.089 0.0984 0.651 NK_HLA L2
ENSG00000132849 PATJ -252049 sc-eQTL 1.53e-02 -0.214 0.0876 0.657 NK_cytokine L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.52e-01 0.125 0.0867 0.657 NK_cytokine L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 6.84e-01 0.0354 0.0868 0.657 NK_cytokine L2
ENSG00000162607 USP1 -945940 sc-eQTL 5.75e-01 -0.0514 0.0916 0.657 NK_cytokine L2
ENSG00000132849 PATJ -252049 sc-eQTL 3.39e-01 0.106 0.11 0.667 PB L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 2.59e-02 -0.237 0.105 0.667 PB L2
ENSG00000162607 USP1 -945940 sc-eQTL 2.69e-01 -0.117 0.105 0.667 PB L2
ENSG00000132849 PATJ -252049 sc-eQTL 9.51e-01 -0.00517 0.0842 0.661 Pro_T L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.45e-01 0.124 0.0849 0.661 Pro_T L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 8.01e-01 -0.0238 0.0943 0.661 Pro_T L2
ENSG00000162607 USP1 -945940 sc-eQTL 1.07e-01 0.0856 0.0529 0.661 Pro_T L2
ENSG00000132849 PATJ -252049 sc-eQTL 3.19e-01 -0.0815 0.0815 0.66 Treg L2
ENSG00000162599 NFIA 625098 sc-eQTL 4.94e-01 -0.0594 0.0867 0.66 Treg L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.52e-01 0.0536 0.0899 0.66 Treg L2
ENSG00000162607 USP1 -945940 sc-eQTL 8.43e-01 -0.0177 0.0893 0.66 Treg L2
ENSG00000162599 NFIA 625098 sc-eQTL 4.37e-01 0.0635 0.0814 0.663 cDC L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 9.86e-01 0.00169 0.0961 0.663 cDC L2
ENSG00000162607 USP1 -945940 sc-eQTL 2.28e-01 -0.104 0.0864 0.663 cDC L2
ENSG00000162599 NFIA 625098 sc-eQTL 8.42e-02 0.0996 0.0574 0.66 cMono_IL1B L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.65e-01 -0.0367 0.0637 0.66 cMono_IL1B L2
ENSG00000162607 USP1 -945940 sc-eQTL 1.20e-01 0.12 0.0768 0.66 cMono_IL1B L2
ENSG00000240563 L1TD1 -704492 sc-eQTL 6.77e-01 0.0324 0.0776 0.66 cMono_IL1B L2
ENSG00000162599 NFIA 625098 sc-eQTL 7.62e-01 -0.0194 0.0641 0.66 cMono_S100A L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.91e-01 -0.0413 0.0767 0.66 cMono_S100A L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.03e-01 -0.0334 0.0873 0.66 cMono_S100A L2
ENSG00000240563 L1TD1 -704492 sc-eQTL 3.49e-01 -0.0681 0.0725 0.66 cMono_S100A L2
ENSG00000132849 PATJ -252049 sc-eQTL 9.51e-01 0.0064 0.104 0.642 gdT L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.14e-01 -0.167 0.105 0.642 gdT L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.22e-01 -0.169 0.108 0.642 gdT L2
ENSG00000162607 USP1 -945940 sc-eQTL 7.91e-01 0.0283 0.107 0.642 gdT L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.24e-01 -0.126 0.0818 0.658 intMono L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 6.78e-01 0.0378 0.091 0.658 intMono L2
ENSG00000162607 USP1 -945940 sc-eQTL 9.26e-01 0.00892 0.0963 0.658 intMono L2
ENSG00000240563 L1TD1 -704492 sc-eQTL 3.96e-01 0.0602 0.0707 0.658 intMono L2
ENSG00000162599 NFIA 625098 sc-eQTL 3.03e-01 -0.0927 0.0898 0.663 ncMono L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 4.47e-02 0.183 0.0904 0.663 ncMono L2
ENSG00000162607 USP1 -945940 sc-eQTL 6.07e-01 -0.0466 0.0904 0.663 ncMono L2
ENSG00000240563 L1TD1 -704492 sc-eQTL 1.54e-01 -0.0915 0.0638 0.663 ncMono L2
ENSG00000162599 NFIA 625098 sc-eQTL 1.98e-02 -0.206 0.0874 0.667 pDC L2
ENSG00000162604 TM2D1 -235066 sc-eQTL 9.23e-01 -0.0087 0.0903 0.667 pDC L2
ENSG00000162607 USP1 -945940 sc-eQTL 4.69e-02 0.209 0.104 0.667 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -252049 sc-eQTL 8.26e-01 0.0163 0.0742 0.66 B_Memory LOneK1K
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.39e-01 0.124 0.0838 0.66 B_Memory LOneK1K
ENSG00000162607 USP1 -945940 sc-eQTL 4.54e-01 -0.064 0.0853 0.66 B_Memory LOneK1K
ENSG00000132849 PATJ -252049 sc-eQTL 7.68e-01 0.023 0.0778 0.66 B_Naive LOneK1K
ENSG00000162604 TM2D1 -235066 sc-eQTL 1.79e-01 -0.0996 0.0739 0.66 B_Naive LOneK1K
ENSG00000162607 USP1 -945940 sc-eQTL 8.13e-01 0.0187 0.079 0.66 B_Naive LOneK1K
ENSG00000162599 NFIA 625098 sc-eQTL 1.21e-01 0.0849 0.0545 0.66 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -235066 sc-eQTL 3.29e-01 -0.0584 0.0597 0.66 CD14_Mono LOneK1K
ENSG00000162607 USP1 -945940 sc-eQTL 5.71e-01 0.0412 0.0725 0.66 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -704492 sc-eQTL 8.67e-01 0.0131 0.0786 0.66 CD14_Mono LOneK1K
ENSG00000162599 NFIA 625098 sc-eQTL 5.70e-02 -0.146 0.0761 0.657 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -235066 sc-eQTL 5.23e-02 0.176 0.0902 0.657 CD16_Mono LOneK1K
ENSG00000162607 USP1 -945940 sc-eQTL 8.21e-01 -0.0193 0.0849 0.657 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -704492 sc-eQTL 2.62e-01 -0.0649 0.0577 0.657 CD16_Mono LOneK1K
ENSG00000132849 PATJ -252049 sc-eQTL 2.82e-01 -0.0868 0.0805 0.657 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 625098 sc-eQTL 8.08e-01 0.02 0.0826 0.657 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -235066 sc-eQTL 8.27e-01 0.0162 0.0739 0.657 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -945940 sc-eQTL 9.72e-01 -0.0028 0.0805 0.657 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA 625098 eQTL 0.0395 0.0456 0.0221 0.00104 0.0 0.317

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 \N -252049 1.81e-06 2.67e-06 2.43e-07 1.43e-06 3.88e-07 6.42e-07 1.27e-06 4.32e-07 1.71e-06 7.36e-07 1.81e-06 1.25e-06 2.75e-06 5.79e-07 3.64e-07 9.95e-07 1.11e-06 1.13e-06 5.9e-07 4.63e-07 7.67e-07 1.96e-06 1.38e-06 5.78e-07 2.43e-06 7.4e-07 1e-06 8.86e-07 1.63e-06 1.39e-06 7.49e-07 2.71e-07 2.51e-07 5.79e-07 8.23e-07 4.91e-07 6.81e-07 2.94e-07 4.41e-07 3.35e-07 2.88e-07 2.69e-06 3.59e-07 1.06e-07 3.07e-07 2.45e-07 2.7e-07 3.73e-08 1.05e-07