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Genes within 1Mb (chr1:61489154:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -253252 sc-eQTL 3.62e-01 0.0744 0.0815 0.788 B L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.18e-01 -0.0528 0.0815 0.788 B L1
ENSG00000162607 USP1 -947143 sc-eQTL 4.95e-01 0.0635 0.0929 0.788 B L1
ENSG00000132849 PATJ -253252 sc-eQTL 5.61e-01 0.0344 0.0592 0.788 CD4T L1
ENSG00000162599 NFIA 623895 sc-eQTL 3.57e-01 0.0832 0.0901 0.788 CD4T L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 4.76e-01 0.0513 0.0719 0.788 CD4T L1
ENSG00000162607 USP1 -947143 sc-eQTL 9.74e-02 0.117 0.0703 0.788 CD4T L1
ENSG00000132849 PATJ -253252 sc-eQTL 2.45e-01 0.0683 0.0585 0.788 CD8T L1
ENSG00000162599 NFIA 623895 sc-eQTL 9.89e-01 -0.00135 0.0934 0.788 CD8T L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.06e-01 0.142 0.0876 0.788 CD8T L1
ENSG00000162607 USP1 -947143 sc-eQTL 9.95e-01 0.000512 0.0839 0.788 CD8T L1
ENSG00000162599 NFIA 623895 sc-eQTL 6.16e-01 -0.0475 0.0947 0.782 DC L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 6.15e-01 0.0496 0.0985 0.782 DC L1
ENSG00000162607 USP1 -947143 sc-eQTL 1.63e-01 0.144 0.103 0.782 DC L1
ENSG00000162599 NFIA 623895 sc-eQTL 2.11e-01 0.0832 0.0664 0.788 Mono L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 8.34e-01 0.0156 0.0742 0.788 Mono L1
ENSG00000162607 USP1 -947143 sc-eQTL 4.15e-01 0.0707 0.0866 0.788 Mono L1
ENSG00000240563 L1TD1 -705695 sc-eQTL 3.04e-01 -0.0832 0.0807 0.788 Mono L1
ENSG00000132849 PATJ -253252 sc-eQTL 7.43e-01 -0.0277 0.0844 0.788 NK L1
ENSG00000162599 NFIA 623895 sc-eQTL 6.53e-01 0.0442 0.0981 0.788 NK L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.52e-01 0.0515 0.0864 0.788 NK L1
ENSG00000162607 USP1 -947143 sc-eQTL 1.15e-01 0.151 0.0951 0.788 NK L1
ENSG00000132849 PATJ -253252 sc-eQTL 4.59e-01 0.0581 0.0783 0.788 Other_T L1
ENSG00000162599 NFIA 623895 sc-eQTL 2.85e-01 0.11 0.102 0.788 Other_T L1
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.23e-01 0.0587 0.0919 0.788 Other_T L1
ENSG00000162607 USP1 -947143 sc-eQTL 8.78e-01 0.00998 0.0647 0.788 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -253252 sc-eQTL 2.54e-02 0.221 0.0979 0.788 B_Activated L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 4.83e-01 0.0885 0.126 0.788 B_Activated L2
ENSG00000162607 USP1 -947143 sc-eQTL 9.45e-01 -0.00851 0.124 0.788 B_Activated L2
ENSG00000132849 PATJ -253252 sc-eQTL 4.76e-01 0.0721 0.101 0.79 B_Intermediate L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.93e-02 0.247 0.105 0.79 B_Intermediate L2
ENSG00000162607 USP1 -947143 sc-eQTL 7.33e-01 -0.0379 0.111 0.79 B_Intermediate L2
ENSG00000132849 PATJ -253252 sc-eQTL 2.54e-01 -0.114 0.0996 0.789 B_Memory L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 8.69e-01 -0.0186 0.112 0.789 B_Memory L2
ENSG00000162607 USP1 -947143 sc-eQTL 4.45e-01 0.0884 0.115 0.789 B_Memory L2
ENSG00000132849 PATJ -253252 sc-eQTL 2.02e-01 0.134 0.105 0.788 B_Naive1 L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 2.00e-01 -0.124 0.0964 0.788 B_Naive1 L2
ENSG00000162607 USP1 -947143 sc-eQTL 1.00e+00 3.62e-05 0.0955 0.788 B_Naive1 L2
ENSG00000132849 PATJ -253252 sc-eQTL 8.80e-01 0.0165 0.11 0.79 B_Naive2 L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.21e-01 0.011 0.111 0.79 B_Naive2 L2
ENSG00000162607 USP1 -947143 sc-eQTL 1.05e-01 0.179 0.11 0.79 B_Naive2 L2
ENSG00000132849 PATJ -253252 sc-eQTL 9.99e-01 9.3e-05 0.088 0.789 CD4_CTL L2
ENSG00000162599 NFIA 623895 sc-eQTL 7.22e-01 0.0381 0.107 0.789 CD4_CTL L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.03e-01 -0.0754 0.112 0.789 CD4_CTL L2
ENSG00000162607 USP1 -947143 sc-eQTL 5.41e-01 -0.0684 0.112 0.789 CD4_CTL L2
ENSG00000132849 PATJ -253252 sc-eQTL 5.39e-01 0.0369 0.06 0.788 CD4_Naive L2
ENSG00000162599 NFIA 623895 sc-eQTL 3.26e-01 0.0927 0.0941 0.788 CD4_Naive L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.23e-01 0.0553 0.0863 0.788 CD4_Naive L2
ENSG00000162607 USP1 -947143 sc-eQTL 4.73e-03 0.224 0.0784 0.788 CD4_Naive L2
ENSG00000132849 PATJ -253252 sc-eQTL 3.74e-01 -0.0673 0.0756 0.788 CD4_TCM L2
ENSG00000162599 NFIA 623895 sc-eQTL 3.27e-01 -0.0998 0.102 0.788 CD4_TCM L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 2.25e-01 0.107 0.088 0.788 CD4_TCM L2
ENSG00000162607 USP1 -947143 sc-eQTL 9.93e-01 0.00076 0.0912 0.788 CD4_TCM L2
ENSG00000132849 PATJ -253252 sc-eQTL 6.52e-01 0.0445 0.0985 0.788 CD4_TEM L2
ENSG00000162599 NFIA 623895 sc-eQTL 1.42e-01 0.161 0.109 0.788 CD4_TEM L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.80e-01 -0.0574 0.104 0.788 CD4_TEM L2
ENSG00000162607 USP1 -947143 sc-eQTL 6.62e-01 -0.0452 0.103 0.788 CD4_TEM L2
ENSG00000132849 PATJ -253252 sc-eQTL 7.11e-01 0.0389 0.105 0.788 CD8_CTL L2
ENSG00000162599 NFIA 623895 sc-eQTL 8.27e-01 -0.0242 0.111 0.788 CD8_CTL L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.55e-01 0.00547 0.0961 0.788 CD8_CTL L2
ENSG00000162607 USP1 -947143 sc-eQTL 2.75e-01 0.112 0.103 0.788 CD8_CTL L2
ENSG00000132849 PATJ -253252 sc-eQTL 2.90e-01 0.0871 0.0821 0.788 CD8_Naive L2
ENSG00000162599 NFIA 623895 sc-eQTL 7.84e-01 -0.0295 0.107 0.788 CD8_Naive L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 6.89e-02 0.182 0.0998 0.788 CD8_Naive L2
ENSG00000162607 USP1 -947143 sc-eQTL 7.48e-01 0.0296 0.0922 0.788 CD8_Naive L2
ENSG00000132849 PATJ -253252 sc-eQTL 3.73e-01 0.0938 0.105 0.782 CD8_TCM L2
ENSG00000162599 NFIA 623895 sc-eQTL 5.27e-01 0.0718 0.113 0.782 CD8_TCM L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.85e-01 0.142 0.107 0.782 CD8_TCM L2
ENSG00000162607 USP1 -947143 sc-eQTL 9.36e-01 -0.0086 0.107 0.782 CD8_TCM L2
ENSG00000132849 PATJ -253252 sc-eQTL 2.34e-01 0.135 0.113 0.801 CD8_TEM L2
ENSG00000162599 NFIA 623895 sc-eQTL 4.17e-01 0.0955 0.118 0.801 CD8_TEM L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 2.24e-02 0.263 0.114 0.801 CD8_TEM L2
ENSG00000162607 USP1 -947143 sc-eQTL 6.00e-01 0.0608 0.116 0.801 CD8_TEM L2
ENSG00000132849 PATJ -253252 sc-eQTL 3.68e-01 0.0847 0.094 0.79 MAIT L2
ENSG00000162599 NFIA 623895 sc-eQTL 1.05e-01 0.175 0.108 0.79 MAIT L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.12e-01 0.17 0.106 0.79 MAIT L2
ENSG00000162607 USP1 -947143 sc-eQTL 6.55e-02 -0.203 0.11 0.79 MAIT L2
ENSG00000132849 PATJ -253252 sc-eQTL 5.38e-01 -0.0665 0.108 0.782 NK_CD56bright L2
ENSG00000162599 NFIA 623895 sc-eQTL 1.17e-01 -0.169 0.107 0.782 NK_CD56bright L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.01e-01 -0.0136 0.11 0.782 NK_CD56bright L2
ENSG00000162607 USP1 -947143 sc-eQTL 3.83e-01 0.103 0.118 0.782 NK_CD56bright L2
ENSG00000132849 PATJ -253252 sc-eQTL 2.28e-01 0.126 0.104 0.787 NK_CD56dim L2
ENSG00000162599 NFIA 623895 sc-eQTL 7.72e-01 -0.0305 0.105 0.787 NK_CD56dim L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 3.30e-01 0.0967 0.0989 0.787 NK_CD56dim L2
ENSG00000162607 USP1 -947143 sc-eQTL 6.79e-02 0.194 0.105 0.787 NK_CD56dim L2
ENSG00000132849 PATJ -253252 sc-eQTL 6.18e-01 0.0504 0.101 0.785 NK_HLA L2
ENSG00000162599 NFIA 623895 sc-eQTL 9.85e-01 0.00197 0.107 0.785 NK_HLA L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.25e-01 -0.073 0.115 0.785 NK_HLA L2
ENSG00000162607 USP1 -947143 sc-eQTL 3.48e-01 -0.112 0.119 0.785 NK_HLA L2
ENSG00000132849 PATJ -253252 sc-eQTL 4.45e-02 -0.215 0.106 0.787 NK_cytokine L2
ENSG00000162599 NFIA 623895 sc-eQTL 8.69e-03 0.275 0.104 0.787 NK_cytokine L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 7.91e-01 0.0279 0.105 0.787 NK_cytokine L2
ENSG00000162607 USP1 -947143 sc-eQTL 3.03e-01 -0.114 0.111 0.787 NK_cytokine L2
ENSG00000132849 PATJ -253252 sc-eQTL 3.84e-01 0.121 0.139 0.804 PB L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 3.68e-01 -0.122 0.135 0.804 PB L2
ENSG00000162607 USP1 -947143 sc-eQTL 8.56e-01 0.0243 0.133 0.804 PB L2
ENSG00000132849 PATJ -253252 sc-eQTL 4.53e-01 -0.0762 0.101 0.791 Pro_T L2
ENSG00000162599 NFIA 623895 sc-eQTL 3.91e-01 0.0883 0.103 0.791 Pro_T L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 6.25e-01 -0.0556 0.114 0.791 Pro_T L2
ENSG00000162607 USP1 -947143 sc-eQTL 1.81e-01 0.0857 0.0639 0.791 Pro_T L2
ENSG00000132849 PATJ -253252 sc-eQTL 4.84e-01 -0.07 0.0997 0.788 Treg L2
ENSG00000162599 NFIA 623895 sc-eQTL 9.03e-01 -0.0129 0.106 0.788 Treg L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.61e-01 0.154 0.109 0.788 Treg L2
ENSG00000162607 USP1 -947143 sc-eQTL 9.14e-01 -0.0118 0.109 0.788 Treg L2
ENSG00000162599 NFIA 623895 sc-eQTL 8.32e-01 0.0217 0.102 0.795 cDC L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 6.04e-01 -0.0622 0.12 0.795 cDC L2
ENSG00000162607 USP1 -947143 sc-eQTL 1.48e-01 -0.156 0.108 0.795 cDC L2
ENSG00000162599 NFIA 623895 sc-eQTL 7.35e-02 0.127 0.0708 0.788 cMono_IL1B L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 6.40e-01 0.0369 0.0786 0.788 cMono_IL1B L2
ENSG00000162607 USP1 -947143 sc-eQTL 2.37e-01 0.113 0.095 0.788 cMono_IL1B L2
ENSG00000240563 L1TD1 -705695 sc-eQTL 9.10e-01 0.0108 0.0957 0.788 cMono_IL1B L2
ENSG00000162599 NFIA 623895 sc-eQTL 9.39e-01 -0.00607 0.0787 0.788 cMono_S100A L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 8.08e-01 -0.023 0.0943 0.788 cMono_S100A L2
ENSG00000162607 USP1 -947143 sc-eQTL 8.57e-01 0.0194 0.107 0.788 cMono_S100A L2
ENSG00000240563 L1TD1 -705695 sc-eQTL 1.03e-01 -0.145 0.0887 0.788 cMono_S100A L2
ENSG00000132849 PATJ -253252 sc-eQTL 9.23e-01 0.0118 0.123 0.761 gdT L2
ENSG00000162599 NFIA 623895 sc-eQTL 9.82e-01 0.00282 0.126 0.761 gdT L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 7.95e-01 0.0336 0.129 0.761 gdT L2
ENSG00000162607 USP1 -947143 sc-eQTL 8.00e-01 0.032 0.126 0.761 gdT L2
ENSG00000162599 NFIA 623895 sc-eQTL 8.66e-01 -0.0169 0.101 0.787 intMono L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.91e-01 0.00121 0.111 0.787 intMono L2
ENSG00000162607 USP1 -947143 sc-eQTL 3.70e-01 0.106 0.118 0.787 intMono L2
ENSG00000240563 L1TD1 -705695 sc-eQTL 1.78e-01 0.117 0.0863 0.787 intMono L2
ENSG00000162599 NFIA 623895 sc-eQTL 5.85e-01 0.0618 0.113 0.79 ncMono L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 7.55e-01 -0.0357 0.114 0.79 ncMono L2
ENSG00000162607 USP1 -947143 sc-eQTL 8.98e-01 -0.0146 0.113 0.79 ncMono L2
ENSG00000240563 L1TD1 -705695 sc-eQTL 1.85e-01 -0.106 0.0801 0.79 ncMono L2
ENSG00000162599 NFIA 623895 sc-eQTL 3.90e-01 -0.0952 0.11 0.797 pDC L2
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.21e-01 -0.0112 0.112 0.797 pDC L2
ENSG00000162607 USP1 -947143 sc-eQTL 6.91e-03 0.351 0.128 0.797 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -253252 sc-eQTL 9.51e-01 -0.00548 0.0896 0.788 B_Memory LOneK1K
ENSG00000162604 TM2D1 -236269 sc-eQTL 1.77e-01 0.137 0.101 0.788 B_Memory LOneK1K
ENSG00000162607 USP1 -947143 sc-eQTL 8.83e-01 0.0153 0.103 0.788 B_Memory LOneK1K
ENSG00000132849 PATJ -253252 sc-eQTL 2.17e-01 0.117 0.0946 0.788 B_Naive LOneK1K
ENSG00000162604 TM2D1 -236269 sc-eQTL 2.56e-01 -0.103 0.0903 0.788 B_Naive LOneK1K
ENSG00000162607 USP1 -947143 sc-eQTL 4.99e-01 0.0651 0.0963 0.788 B_Naive LOneK1K
ENSG00000162599 NFIA 623895 sc-eQTL 8.32e-02 0.116 0.0669 0.788 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -236269 sc-eQTL 9.56e-01 -0.00409 0.0735 0.788 CD14_Mono LOneK1K
ENSG00000162607 USP1 -947143 sc-eQTL 4.46e-01 0.068 0.089 0.788 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -705695 sc-eQTL 6.85e-01 -0.0393 0.0966 0.788 CD14_Mono LOneK1K
ENSG00000162599 NFIA 623895 sc-eQTL 7.34e-01 -0.0316 0.0928 0.787 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -236269 sc-eQTL 7.76e-01 0.0314 0.11 0.787 CD16_Mono LOneK1K
ENSG00000162607 USP1 -947143 sc-eQTL 5.32e-01 0.0641 0.103 0.787 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -705695 sc-eQTL 5.49e-01 -0.042 0.07 0.787 CD16_Mono LOneK1K
ENSG00000132849 PATJ -253252 sc-eQTL 9.37e-01 -0.00771 0.0975 0.787 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 623895 sc-eQTL 4.38e-01 0.0776 0.0997 0.787 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -236269 sc-eQTL 5.89e-01 0.0483 0.0893 0.787 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -947143 sc-eQTL 3.89e-01 0.0838 0.0972 0.787 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA 623895 eQTL 0.0253 0.0596 0.0266 0.00113 0.0 0.194

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina