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Genes within 1Mb (chr1:61481844:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -260562 sc-eQTL 8.06e-01 0.0174 0.0707 0.4 B L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 1.27e-01 0.108 0.0702 0.4 B L1
ENSG00000162607 USP1 -954453 sc-eQTL 6.25e-01 0.0393 0.0804 0.4 B L1
ENSG00000132849 PATJ -260562 sc-eQTL 9.26e-01 0.00472 0.0507 0.4 CD4T L1
ENSG00000162599 NFIA 616585 sc-eQTL 7.02e-01 -0.0296 0.0772 0.4 CD4T L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.55e-01 -0.0569 0.0615 0.4 CD4T L1
ENSG00000162607 USP1 -954453 sc-eQTL 8.60e-01 0.0107 0.0606 0.4 CD4T L1
ENSG00000132849 PATJ -260562 sc-eQTL 6.09e-01 0.0252 0.0493 0.4 CD8T L1
ENSG00000162599 NFIA 616585 sc-eQTL 1.99e-01 0.101 0.0781 0.4 CD8T L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.70e-01 -0.0421 0.074 0.4 CD8T L1
ENSG00000162607 USP1 -954453 sc-eQTL 5.03e-01 -0.0472 0.0704 0.4 CD8T L1
ENSG00000162599 NFIA 616585 sc-eQTL 6.95e-01 0.0315 0.0803 0.405 DC L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 8.79e-01 -0.0128 0.0835 0.405 DC L1
ENSG00000162607 USP1 -954453 sc-eQTL 9.33e-01 0.00732 0.0875 0.405 DC L1
ENSG00000162599 NFIA 616585 sc-eQTL 7.23e-01 0.0203 0.0569 0.4 Mono L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.56e-01 0.0373 0.0634 0.4 Mono L1
ENSG00000162607 USP1 -954453 sc-eQTL 6.08e-01 0.0381 0.0741 0.4 Mono L1
ENSG00000240563 L1TD1 -713005 sc-eQTL 8.12e-01 -0.0165 0.0692 0.4 Mono L1
ENSG00000132849 PATJ -260562 sc-eQTL 1.02e-01 -0.117 0.0713 0.401 NK L1
ENSG00000162599 NFIA 616585 sc-eQTL 5.31e-01 0.0523 0.0833 0.401 NK L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 4.14e-01 0.06 0.0733 0.401 NK L1
ENSG00000162607 USP1 -954453 sc-eQTL 6.09e-01 -0.0416 0.0812 0.401 NK L1
ENSG00000132849 PATJ -260562 sc-eQTL 9.60e-01 -0.0033 0.0663 0.4 Other_T L1
ENSG00000162599 NFIA 616585 sc-eQTL 4.83e-01 0.0609 0.0866 0.4 Other_T L1
ENSG00000162604 TM2D1 -243579 sc-eQTL 8.99e-01 -0.00993 0.0778 0.4 Other_T L1
ENSG00000162607 USP1 -954453 sc-eQTL 7.92e-01 -0.0144 0.0547 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -260562 sc-eQTL 2.23e-01 -0.104 0.0849 0.406 B_Activated L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 2.37e-02 0.244 0.107 0.406 B_Activated L2
ENSG00000162607 USP1 -954453 sc-eQTL 3.76e-01 -0.0942 0.106 0.406 B_Activated L2
ENSG00000132849 PATJ -260562 sc-eQTL 2.78e-01 -0.0937 0.0863 0.401 B_Intermediate L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 2.57e-01 0.103 0.0905 0.401 B_Intermediate L2
ENSG00000162607 USP1 -954453 sc-eQTL 6.25e-01 0.0465 0.0949 0.401 B_Intermediate L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.94e-01 0.000668 0.0867 0.397 B_Memory L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 8.97e-01 -0.0127 0.0975 0.397 B_Memory L2
ENSG00000162607 USP1 -954453 sc-eQTL 8.66e-01 -0.017 0.1 0.397 B_Memory L2
ENSG00000132849 PATJ -260562 sc-eQTL 7.99e-01 -0.0232 0.0911 0.4 B_Naive1 L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 6.85e-01 0.0341 0.0837 0.4 B_Naive1 L2
ENSG00000162607 USP1 -954453 sc-eQTL 5.40e-01 0.0507 0.0826 0.4 B_Naive1 L2
ENSG00000132849 PATJ -260562 sc-eQTL 4.35e-01 0.0732 0.0936 0.397 B_Naive2 L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.89e-01 0.0818 0.0947 0.397 B_Naive2 L2
ENSG00000162607 USP1 -954453 sc-eQTL 5.24e-01 0.0603 0.0945 0.397 B_Naive2 L2
ENSG00000132849 PATJ -260562 sc-eQTL 1.19e-01 0.116 0.0739 0.405 CD4_CTL L2
ENSG00000162599 NFIA 616585 sc-eQTL 2.13e-01 -0.112 0.0901 0.405 CD4_CTL L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 1.65e-01 -0.132 0.0946 0.405 CD4_CTL L2
ENSG00000162607 USP1 -954453 sc-eQTL 4.96e-02 -0.185 0.0936 0.405 CD4_CTL L2
ENSG00000132849 PATJ -260562 sc-eQTL 8.15e-01 -0.0122 0.0518 0.4 CD4_Naive L2
ENSG00000162599 NFIA 616585 sc-eQTL 5.10e-01 -0.0536 0.0813 0.4 CD4_Naive L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 8.38e-01 -0.0153 0.0745 0.4 CD4_Naive L2
ENSG00000162607 USP1 -954453 sc-eQTL 4.07e-01 0.0571 0.0688 0.4 CD4_Naive L2
ENSG00000132849 PATJ -260562 sc-eQTL 2.91e-01 0.068 0.0643 0.4 CD4_TCM L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.33e-01 -0.0296 0.0867 0.4 CD4_TCM L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.71e-01 -0.0673 0.0751 0.4 CD4_TCM L2
ENSG00000162607 USP1 -954453 sc-eQTL 9.21e-01 0.00769 0.0777 0.4 CD4_TCM L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.87e-01 -0.00137 0.0846 0.4 CD4_TEM L2
ENSG00000162599 NFIA 616585 sc-eQTL 8.91e-02 0.16 0.0936 0.4 CD4_TEM L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 2.15e-01 -0.11 0.0887 0.4 CD4_TEM L2
ENSG00000162607 USP1 -954453 sc-eQTL 1.74e-01 -0.121 0.0884 0.4 CD4_TEM L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.14e-01 -0.00952 0.0876 0.4 CD8_CTL L2
ENSG00000162599 NFIA 616585 sc-eQTL 4.53e-01 0.0695 0.0924 0.4 CD8_CTL L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.40e-01 0.0494 0.0803 0.4 CD8_CTL L2
ENSG00000162607 USP1 -954453 sc-eQTL 5.84e-01 -0.0473 0.0861 0.4 CD8_CTL L2
ENSG00000132849 PATJ -260562 sc-eQTL 8.34e-01 0.0145 0.0694 0.4 CD8_Naive L2
ENSG00000162599 NFIA 616585 sc-eQTL 3.02e-01 -0.0933 0.0903 0.4 CD8_Naive L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 8.61e-01 0.0148 0.0847 0.4 CD8_Naive L2
ENSG00000162607 USP1 -954453 sc-eQTL 9.15e-01 -0.00826 0.0777 0.4 CD8_Naive L2
ENSG00000132849 PATJ -260562 sc-eQTL 8.07e-01 -0.0223 0.0916 0.4 CD8_TCM L2
ENSG00000162599 NFIA 616585 sc-eQTL 9.91e-02 0.162 0.0979 0.4 CD8_TCM L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 9.98e-01 -0.000226 0.0931 0.4 CD8_TCM L2
ENSG00000162607 USP1 -954453 sc-eQTL 3.59e-01 0.0855 0.0929 0.4 CD8_TCM L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.36e-01 -0.00744 0.092 0.406 CD8_TEM L2
ENSG00000162599 NFIA 616585 sc-eQTL 2.23e-02 0.216 0.0939 0.406 CD8_TEM L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.85e-01 -0.0814 0.0935 0.406 CD8_TEM L2
ENSG00000162607 USP1 -954453 sc-eQTL 5.74e-01 0.0528 0.0937 0.406 CD8_TEM L2
ENSG00000132849 PATJ -260562 sc-eQTL 8.45e-01 0.0156 0.0798 0.403 MAIT L2
ENSG00000162599 NFIA 616585 sc-eQTL 6.53e-01 0.0413 0.0918 0.403 MAIT L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.35e-01 0.0563 0.0907 0.403 MAIT L2
ENSG00000162607 USP1 -954453 sc-eQTL 3.49e-01 0.0878 0.0936 0.403 MAIT L2
ENSG00000132849 PATJ -260562 sc-eQTL 4.25e-01 -0.0737 0.0922 0.402 NK_CD56bright L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.19e-01 -0.0332 0.0921 0.402 NK_CD56bright L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 6.39e-01 0.0441 0.0939 0.402 NK_CD56bright L2
ENSG00000162607 USP1 -954453 sc-eQTL 7.21e-01 0.0362 0.101 0.402 NK_CD56bright L2
ENSG00000132849 PATJ -260562 sc-eQTL 1.89e-01 -0.118 0.0891 0.401 NK_CD56dim L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.14e-01 0.033 0.09 0.401 NK_CD56dim L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 2.74e-01 0.0928 0.0847 0.401 NK_CD56dim L2
ENSG00000162607 USP1 -954453 sc-eQTL 1.89e-01 -0.119 0.0907 0.401 NK_CD56dim L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.66e-02 -0.141 0.0846 0.395 NK_HLA L2
ENSG00000162599 NFIA 616585 sc-eQTL 9.48e-02 0.151 0.0899 0.395 NK_HLA L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.02e-01 0.1 0.0966 0.395 NK_HLA L2
ENSG00000162607 USP1 -954453 sc-eQTL 5.53e-01 0.06 0.101 0.395 NK_HLA L2
ENSG00000132849 PATJ -260562 sc-eQTL 9.95e-01 -0.000533 0.0923 0.401 NK_cytokine L2
ENSG00000162599 NFIA 616585 sc-eQTL 6.69e-01 0.0388 0.0905 0.401 NK_cytokine L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.32e-01 -0.0565 0.0901 0.401 NK_cytokine L2
ENSG00000162607 USP1 -954453 sc-eQTL 7.93e-01 0.0251 0.0952 0.401 NK_cytokine L2
ENSG00000132849 PATJ -260562 sc-eQTL 8.06e-02 0.206 0.117 0.419 PB L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.51e-01 0.0685 0.115 0.419 PB L2
ENSG00000162607 USP1 -954453 sc-eQTL 7.79e-01 0.0318 0.113 0.419 PB L2
ENSG00000132849 PATJ -260562 sc-eQTL 1.77e-01 0.115 0.0851 0.4 Pro_T L2
ENSG00000162599 NFIA 616585 sc-eQTL 9.73e-01 0.00289 0.0866 0.4 Pro_T L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 1.40e-02 -0.234 0.0944 0.4 Pro_T L2
ENSG00000162607 USP1 -954453 sc-eQTL 7.56e-01 -0.0168 0.054 0.4 Pro_T L2
ENSG00000132849 PATJ -260562 sc-eQTL 3.76e-01 -0.0765 0.0862 0.4 Treg L2
ENSG00000162599 NFIA 616585 sc-eQTL 2.67e-01 -0.102 0.0915 0.4 Treg L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 2.59e-01 -0.107 0.0949 0.4 Treg L2
ENSG00000162607 USP1 -954453 sc-eQTL 2.62e-01 -0.106 0.0941 0.4 Treg L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.22e-01 0.0309 0.0868 0.417 cDC L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 4.59e-01 0.0758 0.102 0.417 cDC L2
ENSG00000162607 USP1 -954453 sc-eQTL 6.60e-01 -0.0407 0.0923 0.417 cDC L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.13e-01 0.0223 0.0605 0.4 cMono_IL1B L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.44e-01 0.0632 0.0666 0.4 cMono_IL1B L2
ENSG00000162607 USP1 -954453 sc-eQTL 4.98e-01 0.0548 0.0808 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 -713005 sc-eQTL 8.90e-01 0.0113 0.0812 0.4 cMono_IL1B L2
ENSG00000162599 NFIA 616585 sc-eQTL 3.97e-01 0.0571 0.0672 0.4 cMono_S100A L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 6.52e-01 -0.0364 0.0806 0.4 cMono_S100A L2
ENSG00000162607 USP1 -954453 sc-eQTL 3.16e-01 0.092 0.0915 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 -713005 sc-eQTL 5.50e-01 0.0457 0.0763 0.4 cMono_S100A L2
ENSG00000132849 PATJ -260562 sc-eQTL 6.27e-01 -0.0504 0.104 0.412 gdT L2
ENSG00000162599 NFIA 616585 sc-eQTL 3.68e-01 -0.0956 0.106 0.412 gdT L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 6.94e-01 -0.0431 0.109 0.412 gdT L2
ENSG00000162607 USP1 -954453 sc-eQTL 4.16e-01 -0.0868 0.106 0.412 gdT L2
ENSG00000162599 NFIA 616585 sc-eQTL 9.12e-01 -0.00939 0.0849 0.407 intMono L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.11e-01 -0.0619 0.0939 0.407 intMono L2
ENSG00000162607 USP1 -954453 sc-eQTL 6.89e-01 -0.0398 0.0994 0.407 intMono L2
ENSG00000240563 L1TD1 -713005 sc-eQTL 3.34e-01 -0.0706 0.073 0.407 intMono L2
ENSG00000162599 NFIA 616585 sc-eQTL 2.63e-01 -0.105 0.0933 0.4 ncMono L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 1.97e-01 0.122 0.0945 0.4 ncMono L2
ENSG00000162607 USP1 -954453 sc-eQTL 7.29e-01 -0.0327 0.0941 0.4 ncMono L2
ENSG00000240563 L1TD1 -713005 sc-eQTL 7.42e-01 -0.022 0.0667 0.4 ncMono L2
ENSG00000162599 NFIA 616585 sc-eQTL 7.36e-01 0.03 0.0889 0.398 pDC L2
ENSG00000162604 TM2D1 -243579 sc-eQTL 6.09e-01 -0.0463 0.0902 0.398 pDC L2
ENSG00000162607 USP1 -954453 sc-eQTL 9.80e-01 -0.00271 0.105 0.398 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -260562 sc-eQTL 4.85e-01 -0.0544 0.0779 0.4 B_Memory LOneK1K
ENSG00000162604 TM2D1 -243579 sc-eQTL 1.21e-01 0.137 0.088 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 -954453 sc-eQTL 9.11e-01 -0.0101 0.0898 0.4 B_Memory LOneK1K
ENSG00000132849 PATJ -260562 sc-eQTL 8.59e-01 0.0146 0.0822 0.4 B_Naive LOneK1K
ENSG00000162604 TM2D1 -243579 sc-eQTL 3.27e-01 0.0769 0.0783 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 -954453 sc-eQTL 4.70e-01 0.0603 0.0834 0.4 B_Naive LOneK1K
ENSG00000162599 NFIA 616585 sc-eQTL 3.07e-01 0.0588 0.0574 0.4 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -243579 sc-eQTL 9.10e-01 0.00709 0.0628 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 -954453 sc-eQTL 4.08e-01 0.063 0.076 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -713005 sc-eQTL 6.46e-01 0.0379 0.0825 0.4 CD14_Mono LOneK1K
ENSG00000162599 NFIA 616585 sc-eQTL 1.79e-01 -0.107 0.0796 0.403 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.17e-01 0.0615 0.0946 0.403 CD16_Mono LOneK1K
ENSG00000162607 USP1 -954453 sc-eQTL 8.15e-01 -0.0207 0.0883 0.403 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -713005 sc-eQTL 6.31e-01 -0.029 0.0602 0.403 CD16_Mono LOneK1K
ENSG00000132849 PATJ -260562 sc-eQTL 3.84e-01 -0.0724 0.083 0.401 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 616585 sc-eQTL 5.70e-01 0.0484 0.0851 0.401 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -243579 sc-eQTL 5.30e-01 0.0479 0.0762 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -954453 sc-eQTL 4.14e-01 -0.0679 0.0829 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132849 PATJ -260562 eQTL 0.0391 -0.0247 0.0119 0.0 0.0 0.386

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 PATJ -260562 1.29e-06 1.08e-06 3.21e-07 1e-06 2.1e-07 4.39e-07 1.2e-06 3.25e-07 1.39e-06 4.28e-07 1.56e-06 6.36e-07 2.02e-06 2.81e-07 4.77e-07 9.17e-07 8.9e-07 6.13e-07 5.88e-07 6.9e-07 4.86e-07 1.6e-06 8.96e-07 5.75e-07 2.24e-06 3.91e-07 7.6e-07 7.27e-07 1.12e-06 1.26e-06 6.04e-07 1.55e-07 2.29e-07 4.87e-07 4.63e-07 3.91e-07 4.92e-07 1.55e-07 3.18e-07 1.17e-07 2.71e-07 1.57e-06 5e-08 6.49e-08 1.91e-07 9.94e-08 1.86e-07 9.04e-08 8.83e-08