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Genes within 1Mb (chr1:61464390:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -278016 sc-eQTL 7.34e-01 0.0336 0.0988 0.85 B L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 5.66e-01 -0.0567 0.0986 0.85 B L1
ENSG00000162607 USP1 -971907 sc-eQTL 6.36e-01 0.0533 0.112 0.85 B L1
ENSG00000132849 PATJ -278016 sc-eQTL 9.93e-01 0.000655 0.0709 0.85 CD4T L1
ENSG00000162599 NFIA 599131 sc-eQTL 1.29e-01 0.164 0.107 0.85 CD4T L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.50e-01 -0.124 0.0857 0.85 CD4T L1
ENSG00000162607 USP1 -971907 sc-eQTL 4.91e-01 -0.0584 0.0847 0.85 CD4T L1
ENSG00000132849 PATJ -278016 sc-eQTL 4.35e-01 0.0541 0.0692 0.85 CD8T L1
ENSG00000162599 NFIA 599131 sc-eQTL 9.57e-01 -0.006 0.11 0.85 CD8T L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.76e-03 -0.291 0.102 0.85 CD8T L1
ENSG00000162607 USP1 -971907 sc-eQTL 9.57e-01 -0.00529 0.099 0.85 CD8T L1
ENSG00000162599 NFIA 599131 sc-eQTL 9.80e-01 0.00281 0.11 0.847 DC L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 9.00e-01 0.0144 0.115 0.847 DC L1
ENSG00000162607 USP1 -971907 sc-eQTL 4.36e-01 0.0936 0.12 0.847 DC L1
ENSG00000162599 NFIA 599131 sc-eQTL 5.49e-01 -0.0474 0.0789 0.85 Mono L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.46e-01 0.128 0.0875 0.85 Mono L1
ENSG00000162607 USP1 -971907 sc-eQTL 4.74e-01 -0.0737 0.103 0.85 Mono L1
ENSG00000240563 L1TD1 -730459 sc-eQTL 4.50e-01 -0.0725 0.0959 0.85 Mono L1
ENSG00000132849 PATJ -278016 sc-eQTL 8.08e-01 -0.0245 0.101 0.85 NK L1
ENSG00000162599 NFIA 599131 sc-eQTL 8.61e-01 0.0206 0.117 0.85 NK L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 5.60e-01 0.0603 0.103 0.85 NK L1
ENSG00000162607 USP1 -971907 sc-eQTL 8.03e-02 -0.2 0.114 0.85 NK L1
ENSG00000132849 PATJ -278016 sc-eQTL 3.83e-01 -0.0809 0.0924 0.85 Other_T L1
ENSG00000162599 NFIA 599131 sc-eQTL 5.80e-01 0.067 0.121 0.85 Other_T L1
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.10e-01 -0.173 0.108 0.85 Other_T L1
ENSG00000162607 USP1 -971907 sc-eQTL 7.45e-01 0.0249 0.0764 0.85 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -278016 sc-eQTL 9.09e-01 -0.0142 0.124 0.857 B_Activated L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.35e-01 -0.075 0.158 0.857 B_Activated L2
ENSG00000162607 USP1 -971907 sc-eQTL 4.97e-01 0.105 0.155 0.857 B_Activated L2
ENSG00000132849 PATJ -278016 sc-eQTL 5.62e-02 -0.227 0.118 0.852 B_Intermediate L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 2.99e-01 -0.13 0.125 0.852 B_Intermediate L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.55e-01 -0.024 0.131 0.852 B_Intermediate L2
ENSG00000132849 PATJ -278016 sc-eQTL 2.52e-02 0.264 0.117 0.849 B_Memory L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.70e-01 0.0568 0.133 0.849 B_Memory L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.96e-01 -0.0354 0.137 0.849 B_Memory L2
ENSG00000132849 PATJ -278016 sc-eQTL 4.62e-01 -0.0937 0.127 0.85 B_Naive1 L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.48e-01 -0.169 0.116 0.85 B_Naive1 L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.93e-01 0.0304 0.115 0.85 B_Naive1 L2
ENSG00000132849 PATJ -278016 sc-eQTL 5.55e-01 0.0759 0.128 0.85 B_Naive2 L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.39e-01 -0.0434 0.13 0.85 B_Naive2 L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.30e-01 0.0278 0.13 0.85 B_Naive2 L2
ENSG00000132849 PATJ -278016 sc-eQTL 3.08e-01 0.104 0.102 0.848 CD4_CTL L2
ENSG00000162599 NFIA 599131 sc-eQTL 6.72e-01 -0.0527 0.124 0.848 CD4_CTL L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.41e-01 -0.0433 0.131 0.848 CD4_CTL L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.18e-02 -0.233 0.129 0.848 CD4_CTL L2
ENSG00000132849 PATJ -278016 sc-eQTL 9.78e-01 0.00196 0.0721 0.85 CD4_Naive L2
ENSG00000162599 NFIA 599131 sc-eQTL 1.07e-01 0.182 0.113 0.85 CD4_Naive L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.07e-02 -0.187 0.103 0.85 CD4_Naive L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.56e-01 -0.0299 0.0959 0.85 CD4_Naive L2
ENSG00000132849 PATJ -278016 sc-eQTL 6.68e-01 0.0392 0.0912 0.85 CD4_TCM L2
ENSG00000162599 NFIA 599131 sc-eQTL 4.98e-02 0.24 0.122 0.85 CD4_TCM L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.36e-01 -0.0358 0.106 0.85 CD4_TCM L2
ENSG00000162607 USP1 -971907 sc-eQTL 9.95e-01 0.000684 0.11 0.85 CD4_TCM L2
ENSG00000132849 PATJ -278016 sc-eQTL 6.08e-01 -0.0601 0.117 0.85 CD4_TEM L2
ENSG00000162599 NFIA 599131 sc-eQTL 6.96e-01 0.051 0.13 0.85 CD4_TEM L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.07e-01 -0.0465 0.123 0.85 CD4_TEM L2
ENSG00000162607 USP1 -971907 sc-eQTL 1.64e-02 -0.293 0.121 0.85 CD4_TEM L2
ENSG00000132849 PATJ -278016 sc-eQTL 9.81e-02 0.202 0.122 0.85 CD8_CTL L2
ENSG00000162599 NFIA 599131 sc-eQTL 9.17e-01 0.0134 0.129 0.85 CD8_CTL L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 9.27e-01 0.0103 0.112 0.85 CD8_CTL L2
ENSG00000162607 USP1 -971907 sc-eQTL 6.02e-01 -0.0628 0.12 0.85 CD8_CTL L2
ENSG00000132849 PATJ -278016 sc-eQTL 8.95e-01 -0.0128 0.0971 0.85 CD8_Naive L2
ENSG00000162599 NFIA 599131 sc-eQTL 8.22e-01 -0.0285 0.127 0.85 CD8_Naive L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.70e-02 -0.217 0.118 0.85 CD8_Naive L2
ENSG00000162607 USP1 -971907 sc-eQTL 9.09e-01 0.0125 0.109 0.85 CD8_Naive L2
ENSG00000132849 PATJ -278016 sc-eQTL 5.99e-01 0.0679 0.129 0.854 CD8_TCM L2
ENSG00000162599 NFIA 599131 sc-eQTL 5.13e-01 0.0908 0.139 0.854 CD8_TCM L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.27e-01 -0.0638 0.131 0.854 CD8_TCM L2
ENSG00000162607 USP1 -971907 sc-eQTL 5.04e-01 -0.0877 0.131 0.854 CD8_TCM L2
ENSG00000132849 PATJ -278016 sc-eQTL 4.72e-02 -0.258 0.129 0.849 CD8_TEM L2
ENSG00000162599 NFIA 599131 sc-eQTL 6.17e-01 -0.0676 0.135 0.849 CD8_TEM L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.13e-01 -0.109 0.133 0.849 CD8_TEM L2
ENSG00000162607 USP1 -971907 sc-eQTL 4.13e-01 0.109 0.133 0.849 CD8_TEM L2
ENSG00000132849 PATJ -278016 sc-eQTL 3.38e-01 -0.104 0.108 0.848 MAIT L2
ENSG00000162599 NFIA 599131 sc-eQTL 1.24e-01 0.192 0.124 0.848 MAIT L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 5.01e-02 -0.241 0.122 0.848 MAIT L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.93e-01 -0.0172 0.127 0.848 MAIT L2
ENSG00000132849 PATJ -278016 sc-eQTL 6.15e-01 0.0638 0.127 0.851 NK_CD56bright L2
ENSG00000162599 NFIA 599131 sc-eQTL 4.31e-01 -0.0996 0.126 0.851 NK_CD56bright L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.90e-02 0.265 0.128 0.851 NK_CD56bright L2
ENSG00000162607 USP1 -971907 sc-eQTL 3.78e-02 -0.287 0.137 0.851 NK_CD56bright L2
ENSG00000132849 PATJ -278016 sc-eQTL 4.54e-01 -0.0941 0.125 0.849 NK_CD56dim L2
ENSG00000162599 NFIA 599131 sc-eQTL 6.66e-01 0.0546 0.126 0.849 NK_CD56dim L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 5.93e-01 -0.0637 0.119 0.849 NK_CD56dim L2
ENSG00000162607 USP1 -971907 sc-eQTL 1.02e-01 -0.209 0.127 0.849 NK_CD56dim L2
ENSG00000132849 PATJ -278016 sc-eQTL 2.87e-01 -0.128 0.119 0.849 NK_HLA L2
ENSG00000162599 NFIA 599131 sc-eQTL 2.99e-01 0.132 0.127 0.849 NK_HLA L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.95e-01 0.176 0.136 0.849 NK_HLA L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.39e-01 -0.0473 0.142 0.849 NK_HLA L2
ENSG00000132849 PATJ -278016 sc-eQTL 3.11e-01 -0.132 0.13 0.849 NK_cytokine L2
ENSG00000162599 NFIA 599131 sc-eQTL 8.39e-01 -0.026 0.127 0.849 NK_cytokine L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.19e-01 -0.103 0.127 0.849 NK_cytokine L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.83e-01 -0.0198 0.134 0.849 NK_cytokine L2
ENSG00000132849 PATJ -278016 sc-eQTL 2.66e-01 0.19 0.17 0.852 PB L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 5.19e-01 -0.107 0.166 0.852 PB L2
ENSG00000162607 USP1 -971907 sc-eQTL 2.39e-01 -0.193 0.163 0.852 PB L2
ENSG00000132849 PATJ -278016 sc-eQTL 7.73e-01 0.0343 0.119 0.85 Pro_T L2
ENSG00000162599 NFIA 599131 sc-eQTL 8.85e-01 0.0174 0.12 0.85 Pro_T L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.97e-01 -0.113 0.133 0.85 Pro_T L2
ENSG00000162607 USP1 -971907 sc-eQTL 6.32e-01 -0.0359 0.075 0.85 Pro_T L2
ENSG00000132849 PATJ -278016 sc-eQTL 9.88e-01 -0.00173 0.119 0.85 Treg L2
ENSG00000162599 NFIA 599131 sc-eQTL 2.54e-01 -0.144 0.126 0.85 Treg L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 2.88e-01 -0.139 0.131 0.85 Treg L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.75e-01 0.0372 0.13 0.85 Treg L2
ENSG00000162599 NFIA 599131 sc-eQTL 9.56e-01 -0.00657 0.12 0.851 cDC L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.57e-01 0.0437 0.141 0.851 cDC L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.43e-01 0.0253 0.127 0.851 cDC L2
ENSG00000162599 NFIA 599131 sc-eQTL 5.66e-01 -0.0483 0.0841 0.85 cMono_IL1B L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.21e-01 0.0747 0.0927 0.85 cMono_IL1B L2
ENSG00000162607 USP1 -971907 sc-eQTL 7.18e-01 0.0406 0.112 0.85 cMono_IL1B L2
ENSG00000240563 L1TD1 -730459 sc-eQTL 8.55e-01 0.0206 0.113 0.85 cMono_IL1B L2
ENSG00000162599 NFIA 599131 sc-eQTL 9.46e-01 0.00633 0.0925 0.85 cMono_S100A L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.37e-01 0.0524 0.111 0.85 cMono_S100A L2
ENSG00000162607 USP1 -971907 sc-eQTL 4.78e-01 -0.0894 0.126 0.85 cMono_S100A L2
ENSG00000240563 L1TD1 -730459 sc-eQTL 6.50e-01 -0.0476 0.105 0.85 cMono_S100A L2
ENSG00000132849 PATJ -278016 sc-eQTL 7.94e-01 -0.0376 0.144 0.861 gdT L2
ENSG00000162599 NFIA 599131 sc-eQTL 5.48e-02 -0.282 0.146 0.861 gdT L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.19e-01 -0.123 0.151 0.861 gdT L2
ENSG00000162607 USP1 -971907 sc-eQTL 2.69e-01 0.164 0.148 0.861 gdT L2
ENSG00000162599 NFIA 599131 sc-eQTL 9.33e-01 -0.00987 0.118 0.849 intMono L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 4.40e-01 -0.1 0.13 0.849 intMono L2
ENSG00000162607 USP1 -971907 sc-eQTL 8.64e-01 -0.0235 0.138 0.849 intMono L2
ENSG00000240563 L1TD1 -730459 sc-eQTL 1.07e-01 -0.163 0.101 0.849 intMono L2
ENSG00000162599 NFIA 599131 sc-eQTL 3.03e-01 -0.136 0.132 0.848 ncMono L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 1.06e-01 0.217 0.133 0.848 ncMono L2
ENSG00000162607 USP1 -971907 sc-eQTL 5.05e-01 -0.0888 0.133 0.848 ncMono L2
ENSG00000240563 L1TD1 -730459 sc-eQTL 7.18e-01 -0.0341 0.0944 0.848 ncMono L2
ENSG00000162599 NFIA 599131 sc-eQTL 5.22e-01 -0.077 0.12 0.85 pDC L2
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.75e-01 0.108 0.122 0.85 pDC L2
ENSG00000162607 USP1 -971907 sc-eQTL 4.68e-01 0.104 0.142 0.85 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -278016 sc-eQTL 6.97e-01 0.042 0.108 0.85 B_Memory LOneK1K
ENSG00000162604 TM2D1 -261033 sc-eQTL 7.97e-01 -0.0315 0.123 0.85 B_Memory LOneK1K
ENSG00000162607 USP1 -971907 sc-eQTL 6.77e-01 0.0518 0.124 0.85 B_Memory LOneK1K
ENSG00000132849 PATJ -278016 sc-eQTL 5.39e-01 -0.0699 0.114 0.85 B_Naive LOneK1K
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.60e-01 -0.0993 0.108 0.85 B_Naive LOneK1K
ENSG00000162607 USP1 -971907 sc-eQTL 6.44e-01 0.0534 0.115 0.85 B_Naive LOneK1K
ENSG00000162599 NFIA 599131 sc-eQTL 6.97e-01 -0.0311 0.0797 0.85 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.09e-01 0.0886 0.0868 0.85 CD14_Mono LOneK1K
ENSG00000162607 USP1 -971907 sc-eQTL 6.55e-01 -0.0472 0.105 0.85 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -730459 sc-eQTL 7.47e-01 -0.037 0.114 0.85 CD14_Mono LOneK1K
ENSG00000162599 NFIA 599131 sc-eQTL 3.39e-01 -0.107 0.111 0.849 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -261033 sc-eQTL 3.48e-01 0.124 0.132 0.849 CD16_Mono LOneK1K
ENSG00000162607 USP1 -971907 sc-eQTL 9.36e-01 0.00992 0.123 0.849 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -730459 sc-eQTL 3.73e-01 -0.0749 0.0839 0.849 CD16_Mono LOneK1K
ENSG00000132849 PATJ -278016 sc-eQTL 3.98e-01 -0.0991 0.117 0.849 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 599131 sc-eQTL 6.45e-01 0.0553 0.12 0.849 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -261033 sc-eQTL 6.58e-01 -0.0476 0.107 0.849 NK_CD56dim LOneK1K
ENSG00000162607 USP1 -971907 sc-eQTL 1.46e-01 -0.17 0.116 0.849 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 \N -278016 1.31e-06 8.47e-07 8.67e-08 3.16e-07 1.08e-07 2.64e-07 6.09e-07 1.54e-07 5.06e-07 2.34e-07 1.07e-06 3.91e-07 9.77e-07 1.58e-07 3e-07 2.08e-07 4.3e-07 3.67e-07 2.51e-07 1.89e-07 2.09e-07 3.92e-07 4.01e-07 1.71e-07 1.14e-06 2.4e-07 3.37e-07 2.7e-07 4.22e-07 6.47e-07 3.77e-07 8.37e-08 4.98e-08 1.54e-07 3.32e-07 9.51e-08 1.4e-07 9.71e-08 7.72e-08 1.6e-08 9.84e-08 7.22e-07 5.53e-08 1.95e-08 1.67e-07 1.27e-08 7.89e-08 2.31e-08 5.05e-08