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Genes within 1Mb (chr1:61366218:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -376188 sc-eQTL 8.58e-01 -0.0115 0.064 0.511 B L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 7.91e-02 -0.112 0.0634 0.511 B L1
ENSG00000132849 PATJ -376188 sc-eQTL 1.13e-01 0.0755 0.0475 0.511 CD4T L1
ENSG00000162599 NFIA 500959 sc-eQTL 6.94e-01 -0.0287 0.0728 0.511 CD4T L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 4.94e-01 0.0397 0.058 0.511 CD4T L1
ENSG00000132849 PATJ -376188 sc-eQTL 1.41e-01 -0.0679 0.0459 0.511 CD8T L1
ENSG00000162599 NFIA 500959 sc-eQTL 1.44e-01 0.107 0.073 0.511 CD8T L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 1.82e-01 -0.0924 0.069 0.511 CD8T L1
ENSG00000162599 NFIA 500959 sc-eQTL 8.06e-01 -0.0177 0.0718 0.511 DC L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 3.88e-01 0.0645 0.0745 0.511 DC L1
ENSG00000162599 NFIA 500959 sc-eQTL 3.48e-01 0.0491 0.0523 0.511 Mono L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 7.63e-01 0.0176 0.0583 0.511 Mono L1
ENSG00000240563 L1TD1 -828631 sc-eQTL 5.44e-01 -0.0387 0.0636 0.511 Mono L1
ENSG00000132849 PATJ -376188 sc-eQTL 8.64e-01 -0.0114 0.0666 0.511 NK L1
ENSG00000162599 NFIA 500959 sc-eQTL 7.22e-01 -0.0276 0.0775 0.511 NK L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 2.48e-01 -0.0789 0.068 0.511 NK L1
ENSG00000132849 PATJ -376188 sc-eQTL 1.33e-01 -0.0909 0.0603 0.511 Other_T L1
ENSG00000162599 NFIA 500959 sc-eQTL 9.76e-01 0.00235 0.0793 0.511 Other_T L1
ENSG00000162604 TM2D1 -359205 sc-eQTL 5.86e-01 -0.0388 0.0711 0.511 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -376188 sc-eQTL 7.82e-01 -0.0224 0.0807 0.515 B_Activated L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 5.99e-01 -0.054 0.102 0.515 B_Activated L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.90e-01 -0.102 0.0779 0.511 B_Intermediate L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 1.81e-01 -0.109 0.0817 0.511 B_Intermediate L2
ENSG00000132849 PATJ -376188 sc-eQTL 9.86e-01 0.0014 0.0783 0.513 B_Memory L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.42e-01 -0.0409 0.088 0.513 B_Memory L2
ENSG00000132849 PATJ -376188 sc-eQTL 5.05e-01 0.0552 0.0827 0.511 B_Naive1 L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 3.86e-01 -0.066 0.076 0.511 B_Naive1 L2
ENSG00000132849 PATJ -376188 sc-eQTL 5.06e-01 0.057 0.0855 0.511 B_Naive2 L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 2.16e-01 -0.107 0.0863 0.511 B_Naive2 L2
ENSG00000132849 PATJ -376188 sc-eQTL 6.53e-01 0.0309 0.0687 0.509 CD4_CTL L2
ENSG00000162599 NFIA 500959 sc-eQTL 8.97e-01 0.0108 0.0835 0.509 CD4_CTL L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 8.65e-01 -0.0149 0.0878 0.509 CD4_CTL L2
ENSG00000132849 PATJ -376188 sc-eQTL 3.98e-02 0.0987 0.0477 0.511 CD4_Naive L2
ENSG00000162599 NFIA 500959 sc-eQTL 8.72e-01 -0.0122 0.0757 0.511 CD4_Naive L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.15e-01 0.0349 0.0693 0.511 CD4_Naive L2
ENSG00000132849 PATJ -376188 sc-eQTL 9.12e-01 0.00667 0.0605 0.511 CD4_TCM L2
ENSG00000162599 NFIA 500959 sc-eQTL 4.26e-01 -0.0647 0.0812 0.511 CD4_TCM L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 9.04e-01 -0.00855 0.0705 0.511 CD4_TCM L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.95e-01 0.102 0.0788 0.511 CD4_TEM L2
ENSG00000162599 NFIA 500959 sc-eQTL 9.39e-01 -0.00676 0.0881 0.511 CD4_TEM L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 4.56e-01 0.062 0.0831 0.511 CD4_TEM L2
ENSG00000132849 PATJ -376188 sc-eQTL 3.60e-01 -0.0751 0.0819 0.511 CD8_CTL L2
ENSG00000162599 NFIA 500959 sc-eQTL 7.91e-01 0.023 0.0867 0.511 CD8_CTL L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 7.96e-02 -0.132 0.0747 0.511 CD8_CTL L2
ENSG00000132849 PATJ -376188 sc-eQTL 7.62e-01 -0.0198 0.0653 0.511 CD8_Naive L2
ENSG00000162599 NFIA 500959 sc-eQTL 6.81e-01 0.035 0.0851 0.511 CD8_Naive L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 3.30e-01 -0.0776 0.0796 0.511 CD8_Naive L2
ENSG00000132849 PATJ -376188 sc-eQTL 7.93e-01 0.0224 0.0853 0.525 CD8_TCM L2
ENSG00000162599 NFIA 500959 sc-eQTL 5.22e-02 0.178 0.091 0.525 CD8_TCM L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.42e-01 -0.0404 0.0867 0.525 CD8_TCM L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.78e-01 -0.116 0.0861 0.509 CD8_TEM L2
ENSG00000162599 NFIA 500959 sc-eQTL 9.45e-01 -0.00621 0.0895 0.509 CD8_TEM L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.43e-02 -0.162 0.0873 0.509 CD8_TEM L2
ENSG00000132849 PATJ -376188 sc-eQTL 2.50e-02 -0.163 0.072 0.511 MAIT L2
ENSG00000162599 NFIA 500959 sc-eQTL 9.19e-01 -0.00852 0.0839 0.511 MAIT L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 8.81e-01 -0.0124 0.0829 0.511 MAIT L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.04e-01 -0.137 0.0839 0.502 NK_CD56bright L2
ENSG00000162599 NFIA 500959 sc-eQTL 4.96e-01 0.0574 0.0842 0.502 NK_CD56bright L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 9.18e-01 0.0089 0.086 0.502 NK_CD56bright L2
ENSG00000132849 PATJ -376188 sc-eQTL 8.27e-01 0.0181 0.0826 0.511 NK_CD56dim L2
ENSG00000162599 NFIA 500959 sc-eQTL 7.05e-01 -0.0314 0.0831 0.511 NK_CD56dim L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 4.81e-01 -0.0553 0.0783 0.511 NK_CD56dim L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.17e-02 0.203 0.08 0.502 NK_HLA L2
ENSG00000162599 NFIA 500959 sc-eQTL 4.27e-01 -0.0686 0.0862 0.502 NK_HLA L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.03e-01 -0.0481 0.0923 0.502 NK_HLA L2
ENSG00000132849 PATJ -376188 sc-eQTL 6.78e-01 0.0351 0.0844 0.511 NK_cytokine L2
ENSG00000162599 NFIA 500959 sc-eQTL 5.91e-01 0.0446 0.0828 0.511 NK_cytokine L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 2.59e-01 -0.0931 0.0823 0.511 NK_cytokine L2
ENSG00000132849 PATJ -376188 sc-eQTL 5.97e-01 0.0574 0.108 0.522 PB L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.24e-01 0.0518 0.105 0.522 PB L2
ENSG00000132849 PATJ -376188 sc-eQTL 3.24e-01 0.0771 0.078 0.507 Pro_T L2
ENSG00000162599 NFIA 500959 sc-eQTL 1.98e-01 -0.102 0.0789 0.507 Pro_T L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 1.09e-01 -0.14 0.087 0.507 Pro_T L2
ENSG00000132849 PATJ -376188 sc-eQTL 1.75e-01 0.107 0.0785 0.511 Treg L2
ENSG00000162599 NFIA 500959 sc-eQTL 5.29e-01 0.0528 0.0837 0.511 Treg L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 2.05e-01 -0.11 0.0866 0.511 Treg L2
ENSG00000162599 NFIA 500959 sc-eQTL 4.24e-01 -0.0634 0.079 0.512 cDC L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 5.03e-01 -0.0626 0.0932 0.512 cDC L2
ENSG00000162599 NFIA 500959 sc-eQTL 6.26e-01 -0.0271 0.0556 0.511 cMono_IL1B L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 7.42e-01 0.0202 0.0613 0.511 cMono_IL1B L2
ENSG00000240563 L1TD1 -828631 sc-eQTL 2.23e-01 -0.0909 0.0744 0.511 cMono_IL1B L2
ENSG00000162599 NFIA 500959 sc-eQTL 3.44e-01 0.0582 0.0614 0.511 cMono_S100A L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 4.14e-01 0.0602 0.0735 0.511 cMono_S100A L2
ENSG00000240563 L1TD1 -828631 sc-eQTL 3.54e-02 -0.146 0.069 0.511 cMono_S100A L2
ENSG00000132849 PATJ -376188 sc-eQTL 8.32e-02 -0.169 0.097 0.521 gdT L2
ENSG00000162599 NFIA 500959 sc-eQTL 6.34e-01 -0.0478 0.1 0.521 gdT L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.92e-01 -0.041 0.103 0.521 gdT L2
ENSG00000162599 NFIA 500959 sc-eQTL 3.30e-01 0.0761 0.0779 0.513 intMono L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 8.83e-01 -0.0128 0.0864 0.513 intMono L2
ENSG00000240563 L1TD1 -828631 sc-eQTL 7.71e-02 -0.119 0.0668 0.513 intMono L2
ENSG00000162599 NFIA 500959 sc-eQTL 4.15e-01 0.0704 0.0862 0.502 ncMono L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 1.66e-01 -0.121 0.0871 0.502 ncMono L2
ENSG00000240563 L1TD1 -828631 sc-eQTL 4.34e-01 0.0481 0.0614 0.502 ncMono L2
ENSG00000162599 NFIA 500959 sc-eQTL 6.27e-01 0.0405 0.0832 0.523 pDC L2
ENSG00000162604 TM2D1 -359205 sc-eQTL 3.41e-02 0.178 0.0833 0.523 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -376188 sc-eQTL 2.23e-01 -0.0851 0.0696 0.511 B_Memory LOneK1K
ENSG00000162604 TM2D1 -359205 sc-eQTL 4.31e-01 -0.0625 0.0792 0.511 B_Memory LOneK1K
ENSG00000132849 PATJ -376188 sc-eQTL 2.54e-01 0.0851 0.0744 0.511 B_Naive LOneK1K
ENSG00000162604 TM2D1 -359205 sc-eQTL 1.71e-01 -0.0973 0.0709 0.511 B_Naive LOneK1K
ENSG00000162599 NFIA 500959 sc-eQTL 9.37e-01 0.00417 0.0528 0.511 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -359205 sc-eQTL 5.04e-01 0.0385 0.0575 0.511 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -828631 sc-eQTL 5.19e-02 -0.147 0.075 0.511 CD14_Mono LOneK1K
ENSG00000162599 NFIA 500959 sc-eQTL 1.18e-01 0.115 0.0734 0.513 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -359205 sc-eQTL 6.07e-01 -0.0451 0.0874 0.513 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -828631 sc-eQTL 6.06e-01 0.0287 0.0556 0.513 CD16_Mono LOneK1K
ENSG00000132849 PATJ -376188 sc-eQTL 3.15e-01 0.0774 0.0768 0.511 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 500959 sc-eQTL 9.39e-01 -0.00604 0.0788 0.511 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -359205 sc-eQTL 2.40e-01 -0.0828 0.0703 0.511 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162604 TM2D1 -359205 eQTL 0.0628 0.0355 0.0191 0.00128 0.0 0.427

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000240563 \N -828631 2.77e-07 1.33e-07 4.69e-08 1.97e-07 1.03e-07 9.9e-08 1.67e-07 5.48e-08 1.47e-07 6.75e-08 1.67e-07 1.01e-07 1.71e-07 7.64e-08 5.69e-08 7.23e-08 4.09e-08 1.33e-07 5.97e-08 4.31e-08 1.22e-07 1.25e-07 1.45e-07 2.95e-08 1.72e-07 1.25e-07 1.12e-07 9.92e-08 1.2e-07 1.03e-07 1.06e-07 3.66e-08 3.3e-08 8.7e-08 5.64e-08 2.99e-08 5.45e-08 9.22e-08 6.55e-08 3.86e-08 4.51e-08 1.52e-07 5.24e-08 7.2e-09 3.84e-08 1.68e-08 1.21e-07 1.88e-09 4.94e-08