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Genes within 1Mb (chr1:61309297:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -433109 sc-eQTL 1.38e-01 -0.162 0.109 0.9 B L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 5.18e-01 0.0705 0.109 0.9 B L1
ENSG00000132849 PATJ -433109 sc-eQTL 3.86e-01 -0.0716 0.0825 0.9 CD4T L1
ENSG00000162599 NFIA 444038 sc-eQTL 2.29e-01 -0.151 0.125 0.9 CD4T L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.47e-01 -0.145 0.0999 0.9 CD4T L1
ENSG00000132849 PATJ -433109 sc-eQTL 1.28e-01 -0.118 0.077 0.9 CD8T L1
ENSG00000162599 NFIA 444038 sc-eQTL 3.29e-01 -0.12 0.123 0.9 CD8T L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 7.99e-02 -0.203 0.115 0.9 CD8T L1
ENSG00000162599 NFIA 444038 sc-eQTL 8.06e-01 -0.0308 0.125 0.901 DC L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.16e-02 -0.279 0.129 0.901 DC L1
ENSG00000162599 NFIA 444038 sc-eQTL 5.18e-01 -0.0586 0.0905 0.9 Mono L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 9.21e-01 0.00998 0.101 0.9 Mono L1
ENSG00000240563 L1TD1 -885552 sc-eQTL 9.12e-02 -0.186 0.109 0.9 Mono L1
ENSG00000132849 PATJ -433109 sc-eQTL 1.40e-01 -0.166 0.112 0.899 NK L1
ENSG00000162599 NFIA 444038 sc-eQTL 1.15e-01 -0.206 0.13 0.899 NK L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 4.93e-03 -0.321 0.113 0.899 NK L1
ENSG00000132849 PATJ -433109 sc-eQTL 9.31e-01 0.00915 0.106 0.9 Other_T L1
ENSG00000162599 NFIA 444038 sc-eQTL 3.15e-01 -0.14 0.139 0.9 Other_T L1
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.19e-01 0.153 0.124 0.9 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -433109 sc-eQTL 6.43e-01 -0.0625 0.134 0.903 B_Activated L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.64e-01 0.238 0.17 0.903 B_Activated L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.44e-02 -0.297 0.131 0.899 B_Intermediate L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.73e-01 -0.124 0.139 0.899 B_Intermediate L2
ENSG00000132849 PATJ -433109 sc-eQTL 8.27e-01 -0.0294 0.134 0.901 B_Memory L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 6.29e-01 0.0729 0.151 0.901 B_Memory L2
ENSG00000132849 PATJ -433109 sc-eQTL 6.88e-01 0.0573 0.142 0.9 B_Naive1 L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 8.20e-01 0.0298 0.131 0.9 B_Naive1 L2
ENSG00000132849 PATJ -433109 sc-eQTL 8.99e-01 -0.0184 0.144 0.899 B_Naive2 L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.36e-01 0.14 0.146 0.899 B_Naive2 L2
ENSG00000132849 PATJ -433109 sc-eQTL 9.14e-01 0.0123 0.114 0.895 CD4_CTL L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.48e-01 -0.0266 0.139 0.895 CD4_CTL L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.91e-01 -0.154 0.145 0.895 CD4_CTL L2
ENSG00000132849 PATJ -433109 sc-eQTL 5.73e-01 -0.0467 0.0827 0.9 CD4_Naive L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.78e-01 0.0199 0.13 0.9 CD4_Naive L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.51e-01 -0.171 0.118 0.9 CD4_Naive L2
ENSG00000132849 PATJ -433109 sc-eQTL 1.28e-01 -0.16 0.105 0.9 CD4_TCM L2
ENSG00000162599 NFIA 444038 sc-eQTL 7.24e-01 0.0499 0.141 0.9 CD4_TCM L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.56e-01 -0.113 0.122 0.9 CD4_TCM L2
ENSG00000132849 PATJ -433109 sc-eQTL 8.00e-01 0.0341 0.134 0.9 CD4_TEM L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.19e-02 -0.259 0.148 0.9 CD4_TEM L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 9.95e-01 -0.000883 0.141 0.9 CD4_TEM L2
ENSG00000132849 PATJ -433109 sc-eQTL 1.89e-01 -0.185 0.141 0.9 CD8_CTL L2
ENSG00000162599 NFIA 444038 sc-eQTL 4.74e-01 -0.107 0.149 0.9 CD8_CTL L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 5.66e-01 -0.0744 0.129 0.9 CD8_CTL L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.48e-01 -0.124 0.107 0.9 CD8_Naive L2
ENSG00000162599 NFIA 444038 sc-eQTL 7.67e-01 -0.0417 0.141 0.9 CD8_Naive L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.29e-02 -0.298 0.13 0.9 CD8_Naive L2
ENSG00000132849 PATJ -433109 sc-eQTL 6.30e-01 -0.0722 0.149 0.907 CD8_TCM L2
ENSG00000162599 NFIA 444038 sc-eQTL 6.77e-01 0.0671 0.161 0.907 CD8_TCM L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 6.52e-01 0.0686 0.152 0.907 CD8_TCM L2
ENSG00000132849 PATJ -433109 sc-eQTL 3.37e-01 -0.145 0.151 0.902 CD8_TEM L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.84e-01 0.0229 0.157 0.902 CD8_TEM L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.70e-01 -0.211 0.153 0.902 CD8_TEM L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.96e-01 -0.129 0.123 0.9 MAIT L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.49e-01 -0.027 0.142 0.9 MAIT L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.27e-01 0.17 0.14 0.9 MAIT L2
ENSG00000132849 PATJ -433109 sc-eQTL 8.52e-01 -0.0274 0.147 0.896 NK_CD56bright L2
ENSG00000162599 NFIA 444038 sc-eQTL 9.07e-01 -0.0171 0.147 0.896 NK_CD56bright L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.87e-02 -0.326 0.148 0.896 NK_CD56bright L2
ENSG00000132849 PATJ -433109 sc-eQTL 9.24e-01 -0.0134 0.141 0.899 NK_CD56dim L2
ENSG00000162599 NFIA 444038 sc-eQTL 9.31e-01 -0.0124 0.142 0.899 NK_CD56dim L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.85e-02 -0.314 0.132 0.899 NK_CD56dim L2
ENSG00000132849 PATJ -433109 sc-eQTL 9.53e-01 0.00798 0.134 0.897 NK_HLA L2
ENSG00000162599 NFIA 444038 sc-eQTL 4.57e-02 -0.284 0.141 0.897 NK_HLA L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 5.55e-01 -0.0899 0.152 0.897 NK_HLA L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.55e-02 -0.317 0.141 0.899 NK_cytokine L2
ENSG00000162599 NFIA 444038 sc-eQTL 5.63e-01 -0.0809 0.14 0.899 NK_cytokine L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.35e-01 -0.165 0.139 0.899 NK_cytokine L2
ENSG00000132849 PATJ -433109 sc-eQTL 4.59e-01 0.126 0.169 0.896 PB L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.12e-01 0.261 0.163 0.896 PB L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.95e-02 0.292 0.133 0.9 Pro_T L2
ENSG00000162599 NFIA 444038 sc-eQTL 6.58e-02 -0.251 0.136 0.9 Pro_T L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 9.01e-01 0.0189 0.151 0.9 Pro_T L2
ENSG00000132849 PATJ -433109 sc-eQTL 8.26e-01 0.0296 0.134 0.9 Treg L2
ENSG00000162599 NFIA 444038 sc-eQTL 2.92e-01 -0.15 0.142 0.9 Treg L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 9.87e-01 0.00246 0.148 0.9 Treg L2
ENSG00000162599 NFIA 444038 sc-eQTL 1.05e-01 -0.22 0.135 0.902 cDC L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.05e-02 -0.37 0.158 0.902 cDC L2
ENSG00000162599 NFIA 444038 sc-eQTL 7.57e-01 -0.0296 0.0956 0.9 cMono_IL1B L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 5.86e-01 0.0575 0.105 0.9 cMono_IL1B L2
ENSG00000240563 L1TD1 -885552 sc-eQTL 1.87e-02 -0.3 0.127 0.9 cMono_IL1B L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.18e-01 -0.0243 0.106 0.9 cMono_S100A L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 7.97e-01 0.0326 0.127 0.9 cMono_S100A L2
ENSG00000240563 L1TD1 -885552 sc-eQTL 7.46e-02 -0.213 0.119 0.9 cMono_S100A L2
ENSG00000132849 PATJ -433109 sc-eQTL 2.01e-01 -0.21 0.163 0.9 gdT L2
ENSG00000162599 NFIA 444038 sc-eQTL 1.82e-01 -0.224 0.167 0.9 gdT L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.20e-01 -0.172 0.173 0.9 gdT L2
ENSG00000162599 NFIA 444038 sc-eQTL 6.61e-01 0.059 0.134 0.898 intMono L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 1.32e-01 -0.223 0.148 0.898 intMono L2
ENSG00000240563 L1TD1 -885552 sc-eQTL 7.00e-02 -0.209 0.115 0.898 intMono L2
ENSG00000162599 NFIA 444038 sc-eQTL 3.98e-01 -0.125 0.147 0.898 ncMono L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 8.50e-01 -0.0283 0.149 0.898 ncMono L2
ENSG00000240563 L1TD1 -885552 sc-eQTL 4.31e-01 0.0827 0.105 0.898 ncMono L2
ENSG00000162599 NFIA 444038 sc-eQTL 8.63e-01 0.0235 0.136 0.898 pDC L2
ENSG00000162604 TM2D1 -416126 sc-eQTL 4.78e-01 -0.0981 0.138 0.898 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -433109 sc-eQTL 2.05e-02 -0.275 0.118 0.9 B_Memory LOneK1K
ENSG00000162604 TM2D1 -416126 sc-eQTL 9.79e-01 0.00361 0.135 0.9 B_Memory LOneK1K
ENSG00000132849 PATJ -433109 sc-eQTL 9.15e-01 -0.0135 0.127 0.9 B_Naive LOneK1K
ENSG00000162604 TM2D1 -416126 sc-eQTL 3.46e-01 0.114 0.121 0.9 B_Naive LOneK1K
ENSG00000162599 NFIA 444038 sc-eQTL 6.43e-01 -0.0423 0.091 0.9 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -416126 sc-eQTL 8.40e-01 0.0201 0.0993 0.9 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -885552 sc-eQTL 1.12e-02 -0.329 0.129 0.9 CD14_Mono LOneK1K
ENSG00000162599 NFIA 444038 sc-eQTL 9.23e-01 -0.0122 0.126 0.899 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -416126 sc-eQTL 5.12e-01 -0.0978 0.149 0.899 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -885552 sc-eQTL 7.03e-01 -0.0363 0.0949 0.899 CD16_Mono LOneK1K
ENSG00000132849 PATJ -433109 sc-eQTL 2.18e-01 -0.162 0.131 0.899 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 444038 sc-eQTL 5.30e-01 -0.0847 0.135 0.899 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -416126 sc-eQTL 2.74e-02 -0.265 0.119 0.899 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA 444038 eQTL 0.0112 -0.0832 0.0328 0.0 0.0 0.107
ENSG00000162604 TM2D1 -416126 eQTL 0.0476 0.0588 0.0297 0.0 0.0 0.107
ENSG00000240563 L1TD1 -885552 eQTL 7.26e-05 -0.236 0.0592 0.0 0.0 0.107

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000240563 L1TD1 -885552 2.67e-07 1.3e-07 3.88e-08 1.81e-07 9.16e-08 9.76e-08 1.53e-07 5.37e-08 1.45e-07 4.94e-08 1.57e-07 8.68e-08 1.52e-07 6.76e-08 6.02e-08 7.53e-08 3.87e-08 1.26e-07 5.82e-08 4.31e-08 1.08e-07 1.28e-07 1.39e-07 2.95e-08 1.5e-07 1.14e-07 1.07e-07 9.61e-08 1.09e-07 1.02e-07 9.7e-08 3.65e-08 3.56e-08 8e-08 6.34e-08 3.6e-08 5.31e-08 8.63e-08 6.86e-08 3.92e-08 5.33e-08 1.36e-07 5.24e-08 1.71e-08 4.25e-08 1.84e-08 1.21e-07 3.83e-09 4.81e-08