logo

Genes within 1Mb (chr1:61277021:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -465385 sc-eQTL 5.43e-01 0.0417 0.0685 0.44 B L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 8.40e-01 -0.0138 0.0685 0.44 B L1
ENSG00000132849 PATJ -465385 sc-eQTL 2.06e-01 0.0628 0.0495 0.44 CD4T L1
ENSG00000162599 NFIA 411762 sc-eQTL 6.44e-01 -0.035 0.0757 0.44 CD4T L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 2.93e-01 0.0635 0.0603 0.44 CD4T L1
ENSG00000132849 PATJ -465385 sc-eQTL 6.13e-01 -0.0241 0.0476 0.44 CD8T L1
ENSG00000162599 NFIA 411762 sc-eQTL 8.56e-01 -0.0138 0.0758 0.44 CD8T L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.30e-02 0.133 0.071 0.44 CD8T L1
ENSG00000162599 NFIA 411762 sc-eQTL 4.28e-02 -0.156 0.0764 0.448 DC L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 1.86e-01 0.106 0.0799 0.448 DC L1
ENSG00000162599 NFIA 411762 sc-eQTL 9.43e-01 -0.00402 0.0559 0.44 Mono L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.83e-01 0.0254 0.0622 0.44 Mono L1
ENSG00000240563 L1TD1 -917828 sc-eQTL 1.71e-01 -0.093 0.0676 0.44 Mono L1
ENSG00000132849 PATJ -465385 sc-eQTL 7.21e-01 0.0249 0.0697 0.44 NK L1
ENSG00000162599 NFIA 411762 sc-eQTL 3.66e-01 -0.0734 0.081 0.44 NK L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.35e-02 -0.132 0.0709 0.44 NK L1
ENSG00000132849 PATJ -465385 sc-eQTL 1.85e-02 -0.147 0.0621 0.44 Other_T L1
ENSG00000162599 NFIA 411762 sc-eQTL 6.56e-01 -0.0367 0.0822 0.44 Other_T L1
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.38e-01 0.0706 0.0736 0.44 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -465385 sc-eQTL 3.01e-01 0.0849 0.0818 0.436 B_Activated L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 8.33e-01 0.0221 0.104 0.436 B_Activated L2
ENSG00000132849 PATJ -465385 sc-eQTL 6.36e-01 -0.0388 0.0819 0.44 B_Intermediate L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.53e-01 0.0386 0.0859 0.44 B_Intermediate L2
ENSG00000132849 PATJ -465385 sc-eQTL 8.29e-01 0.0176 0.0811 0.444 B_Memory L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.21e-01 -0.0451 0.0911 0.444 B_Memory L2
ENSG00000132849 PATJ -465385 sc-eQTL 6.66e-01 0.0385 0.0891 0.44 B_Naive1 L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 5.89e-01 -0.0443 0.0819 0.44 B_Naive1 L2
ENSG00000132849 PATJ -465385 sc-eQTL 7.00e-01 -0.0348 0.0904 0.442 B_Naive2 L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.01e-01 -0.0947 0.0913 0.442 B_Naive2 L2
ENSG00000132849 PATJ -465385 sc-eQTL 6.44e-01 0.0334 0.072 0.445 CD4_CTL L2
ENSG00000162599 NFIA 411762 sc-eQTL 2.47e-01 -0.102 0.0873 0.445 CD4_CTL L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.64e-02 -0.163 0.0914 0.445 CD4_CTL L2
ENSG00000132849 PATJ -465385 sc-eQTL 1.73e-01 0.0686 0.0502 0.44 CD4_Naive L2
ENSG00000162599 NFIA 411762 sc-eQTL 8.09e-01 -0.0192 0.0791 0.44 CD4_Naive L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 1.61e-01 0.102 0.0722 0.44 CD4_Naive L2
ENSG00000132849 PATJ -465385 sc-eQTL 4.45e-01 -0.0482 0.0629 0.44 CD4_TCM L2
ENSG00000162599 NFIA 411762 sc-eQTL 4.86e-02 -0.166 0.0839 0.44 CD4_TCM L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.32e-01 0.0712 0.0733 0.44 CD4_TCM L2
ENSG00000132849 PATJ -465385 sc-eQTL 5.31e-01 0.051 0.0812 0.44 CD4_TEM L2
ENSG00000162599 NFIA 411762 sc-eQTL 7.67e-01 0.0268 0.0905 0.44 CD4_TEM L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.04e-01 0.0879 0.0853 0.44 CD4_TEM L2
ENSG00000132849 PATJ -465385 sc-eQTL 7.24e-02 -0.153 0.0846 0.44 CD8_CTL L2
ENSG00000162599 NFIA 411762 sc-eQTL 5.12e-01 0.0591 0.09 0.44 CD8_CTL L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 5.97e-01 -0.0414 0.0782 0.44 CD8_CTL L2
ENSG00000132849 PATJ -465385 sc-eQTL 5.59e-01 0.0387 0.0661 0.44 CD8_Naive L2
ENSG00000162599 NFIA 411762 sc-eQTL 9.47e-01 -0.00579 0.0864 0.44 CD8_Naive L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 8.69e-03 0.211 0.0795 0.44 CD8_Naive L2
ENSG00000132849 PATJ -465385 sc-eQTL 7.85e-01 -0.0232 0.0851 0.447 CD8_TCM L2
ENSG00000162599 NFIA 411762 sc-eQTL 2.90e-01 0.097 0.0914 0.447 CD8_TCM L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.79e-01 0.0761 0.0864 0.447 CD8_TCM L2
ENSG00000132849 PATJ -465385 sc-eQTL 8.45e-01 -0.018 0.0923 0.436 CD8_TEM L2
ENSG00000162599 NFIA 411762 sc-eQTL 5.56e-01 -0.0562 0.0955 0.436 CD8_TEM L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 2.63e-01 -0.105 0.0937 0.436 CD8_TEM L2
ENSG00000132849 PATJ -465385 sc-eQTL 5.27e-02 -0.144 0.074 0.442 MAIT L2
ENSG00000162599 NFIA 411762 sc-eQTL 2.02e-01 -0.11 0.0856 0.442 MAIT L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 4.33e-01 0.0667 0.0848 0.442 MAIT L2
ENSG00000132849 PATJ -465385 sc-eQTL 3.08e-01 0.0888 0.0869 0.444 NK_CD56bright L2
ENSG00000162599 NFIA 411762 sc-eQTL 9.04e-01 0.0105 0.087 0.444 NK_CD56bright L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.47e-01 -0.0406 0.0887 0.444 NK_CD56bright L2
ENSG00000132849 PATJ -465385 sc-eQTL 7.87e-01 -0.0235 0.0871 0.442 NK_CD56dim L2
ENSG00000162599 NFIA 411762 sc-eQTL 6.38e-01 -0.0413 0.0876 0.442 NK_CD56dim L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.93e-02 -0.145 0.0821 0.442 NK_CD56dim L2
ENSG00000132849 PATJ -465385 sc-eQTL 4.43e-01 0.0642 0.0835 0.445 NK_HLA L2
ENSG00000162599 NFIA 411762 sc-eQTL 4.73e-01 -0.0637 0.0887 0.445 NK_HLA L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 9.48e-01 0.00622 0.095 0.445 NK_HLA L2
ENSG00000132849 PATJ -465385 sc-eQTL 2.30e-01 0.105 0.087 0.442 NK_cytokine L2
ENSG00000162599 NFIA 411762 sc-eQTL 2.57e-01 -0.0971 0.0854 0.442 NK_cytokine L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 2.26e-01 -0.103 0.085 0.442 NK_cytokine L2
ENSG00000132849 PATJ -465385 sc-eQTL 5.84e-01 0.0637 0.116 0.441 PB L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 8.74e-01 0.0179 0.113 0.441 PB L2
ENSG00000132849 PATJ -465385 sc-eQTL 5.08e-02 -0.162 0.0823 0.437 Pro_T L2
ENSG00000162599 NFIA 411762 sc-eQTL 3.45e-03 0.244 0.0824 0.437 Pro_T L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 9.91e-01 0.00104 0.093 0.437 Pro_T L2
ENSG00000132849 PATJ -465385 sc-eQTL 1.12e-01 0.13 0.0812 0.44 Treg L2
ENSG00000162599 NFIA 411762 sc-eQTL 6.67e-02 0.159 0.0861 0.44 Treg L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.85e-02 -0.158 0.0893 0.44 Treg L2
ENSG00000162599 NFIA 411762 sc-eQTL 9.19e-01 -0.00834 0.0815 0.446 cDC L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 4.13e-01 0.0786 0.0959 0.446 cDC L2
ENSG00000162599 NFIA 411762 sc-eQTL 6.92e-01 -0.0236 0.0595 0.44 cMono_IL1B L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.92e-01 0.0173 0.0656 0.44 cMono_IL1B L2
ENSG00000240563 L1TD1 -917828 sc-eQTL 8.58e-01 -0.0143 0.0799 0.44 cMono_IL1B L2
ENSG00000162599 NFIA 411762 sc-eQTL 9.46e-01 -0.00448 0.066 0.44 cMono_S100A L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.51e-01 0.0737 0.0788 0.44 cMono_S100A L2
ENSG00000240563 L1TD1 -917828 sc-eQTL 5.00e-01 -0.0505 0.0747 0.44 cMono_S100A L2
ENSG00000132849 PATJ -465385 sc-eQTL 1.98e-01 -0.126 0.0975 0.47 gdT L2
ENSG00000162599 NFIA 411762 sc-eQTL 5.99e-01 -0.0528 0.1 0.47 gdT L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 4.20e-01 0.0832 0.103 0.47 gdT L2
ENSG00000162599 NFIA 411762 sc-eQTL 3.14e-01 -0.0829 0.0822 0.436 intMono L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.95e-01 0.0237 0.0911 0.436 intMono L2
ENSG00000240563 L1TD1 -917828 sc-eQTL 2.92e-01 -0.0747 0.0707 0.436 intMono L2
ENSG00000162599 NFIA 411762 sc-eQTL 6.46e-01 0.0416 0.0905 0.439 ncMono L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 1.34e-01 -0.137 0.0913 0.439 ncMono L2
ENSG00000240563 L1TD1 -917828 sc-eQTL 5.80e-02 -0.122 0.064 0.439 ncMono L2
ENSG00000162599 NFIA 411762 sc-eQTL 2.14e-01 -0.109 0.0872 0.46 pDC L2
ENSG00000162604 TM2D1 -448402 sc-eQTL 6.87e-01 0.0359 0.0889 0.46 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -465385 sc-eQTL 9.89e-01 -0.00105 0.0729 0.44 B_Memory LOneK1K
ENSG00000162604 TM2D1 -448402 sc-eQTL 7.34e-01 0.0282 0.0828 0.44 B_Memory LOneK1K
ENSG00000132849 PATJ -465385 sc-eQTL 9.33e-01 0.00678 0.0802 0.44 B_Naive LOneK1K
ENSG00000162604 TM2D1 -448402 sc-eQTL 3.54e-01 -0.071 0.0764 0.44 B_Naive LOneK1K
ENSG00000162599 NFIA 411762 sc-eQTL 9.64e-01 0.00257 0.0567 0.44 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -448402 sc-eQTL 4.80e-01 0.0438 0.0618 0.44 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -917828 sc-eQTL 6.94e-01 -0.032 0.0813 0.44 CD14_Mono LOneK1K
ENSG00000162599 NFIA 411762 sc-eQTL 8.51e-01 0.0145 0.0771 0.442 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -448402 sc-eQTL 5.50e-01 -0.0546 0.0913 0.442 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -917828 sc-eQTL 7.08e-02 -0.105 0.0577 0.442 CD16_Mono LOneK1K
ENSG00000132849 PATJ -465385 sc-eQTL 9.33e-01 0.00682 0.0814 0.442 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 411762 sc-eQTL 2.57e-01 -0.0945 0.0831 0.442 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -448402 sc-eQTL 1.19e-01 -0.116 0.0742 0.442 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132849 PATJ -465385 eQTL 0.00635 -0.0314 0.0115 0.00534 0.0 0.455

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina