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Genes within 1Mb (chr1:61203112:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -539294 sc-eQTL 6.45e-01 0.0337 0.073 0.293 B L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 8.67e-01 -0.0122 0.073 0.293 B L1
ENSG00000132849 PATJ -539294 sc-eQTL 9.85e-01 0.00101 0.0537 0.293 CD4T L1
ENSG00000162599 NFIA 337853 sc-eQTL 4.71e-02 -0.162 0.0811 0.293 CD4T L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 4.21e-01 -0.0525 0.0651 0.293 CD4T L1
ENSG00000132849 PATJ -539294 sc-eQTL 8.28e-01 0.0112 0.0515 0.293 CD8T L1
ENSG00000162599 NFIA 337853 sc-eQTL 8.59e-01 -0.0146 0.082 0.293 CD8T L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 7.67e-01 -0.023 0.0774 0.293 CD8T L1
ENSG00000162599 NFIA 337853 sc-eQTL 8.67e-01 0.0142 0.0851 0.291 DC L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 9.33e-01 0.00751 0.0885 0.291 DC L1
ENSG00000162599 NFIA 337853 sc-eQTL 9.86e-01 0.00102 0.0588 0.293 Mono L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.86e-01 0.0865 0.0652 0.293 Mono L1
ENSG00000240563 L1TD1 -991737 sc-eQTL 4.35e-01 0.0559 0.0714 0.293 Mono L1
ENSG00000132849 PATJ -539294 sc-eQTL 7.33e-01 -0.0255 0.0746 0.294 NK L1
ENSG00000162599 NFIA 337853 sc-eQTL 9.36e-01 -0.00698 0.0868 0.294 NK L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 3.04e-01 -0.0785 0.0763 0.294 NK L1
ENSG00000132849 PATJ -539294 sc-eQTL 2.00e-01 -0.0886 0.0688 0.293 Other_T L1
ENSG00000162599 NFIA 337853 sc-eQTL 5.70e-01 -0.0514 0.0903 0.293 Other_T L1
ENSG00000162604 TM2D1 -522311 sc-eQTL 6.36e-01 0.0384 0.081 0.293 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -539294 sc-eQTL 3.89e-01 0.0761 0.0881 0.301 B_Activated L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.94e-01 0.146 0.112 0.301 B_Activated L2
ENSG00000132849 PATJ -539294 sc-eQTL 1.20e-01 -0.137 0.0881 0.294 B_Intermediate L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 6.59e-01 0.0411 0.0929 0.294 B_Intermediate L2
ENSG00000132849 PATJ -539294 sc-eQTL 2.57e-01 0.101 0.0888 0.293 B_Memory L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.02e-01 0.0673 0.1 0.293 B_Memory L2
ENSG00000132849 PATJ -539294 sc-eQTL 9.70e-01 -0.00349 0.0936 0.293 B_Naive1 L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 7.07e-01 -0.0324 0.0861 0.293 B_Naive1 L2
ENSG00000132849 PATJ -539294 sc-eQTL 3.54e-01 0.0891 0.096 0.292 B_Naive2 L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 6.16e-01 -0.0489 0.0973 0.292 B_Naive2 L2
ENSG00000132849 PATJ -539294 sc-eQTL 1.37e-01 0.114 0.0767 0.293 CD4_CTL L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.77e-01 -0.102 0.0935 0.293 CD4_CTL L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 7.15e-01 -0.0361 0.0986 0.293 CD4_CTL L2
ENSG00000132849 PATJ -539294 sc-eQTL 4.49e-01 -0.0413 0.0545 0.293 CD4_Naive L2
ENSG00000162599 NFIA 337853 sc-eQTL 9.27e-01 -0.00787 0.0856 0.293 CD4_Naive L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.73e-01 -0.107 0.0781 0.293 CD4_Naive L2
ENSG00000132849 PATJ -539294 sc-eQTL 1.79e-01 0.0907 0.0672 0.293 CD4_TCM L2
ENSG00000162599 NFIA 337853 sc-eQTL 1.61e-02 -0.217 0.0895 0.293 CD4_TCM L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 8.40e-01 0.0159 0.0787 0.293 CD4_TCM L2
ENSG00000132849 PATJ -539294 sc-eQTL 3.65e-01 0.0793 0.0873 0.293 CD4_TEM L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.28e-02 -0.221 0.0962 0.293 CD4_TEM L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 3.90e-01 0.0791 0.0919 0.293 CD4_TEM L2
ENSG00000132849 PATJ -539294 sc-eQTL 5.59e-01 -0.0535 0.0915 0.293 CD8_CTL L2
ENSG00000162599 NFIA 337853 sc-eQTL 4.46e-01 -0.0737 0.0966 0.293 CD8_CTL L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 9.45e-01 -0.00582 0.084 0.293 CD8_CTL L2
ENSG00000132849 PATJ -539294 sc-eQTL 4.75e-01 -0.0516 0.072 0.293 CD8_Naive L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.26e-01 -0.114 0.0938 0.293 CD8_Naive L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 7.23e-01 -0.0313 0.0881 0.293 CD8_Naive L2
ENSG00000132849 PATJ -539294 sc-eQTL 6.79e-01 -0.0392 0.0947 0.292 CD8_TCM L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.99e-01 0.106 0.102 0.292 CD8_TCM L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.57e-02 0.231 0.0949 0.292 CD8_TCM L2
ENSG00000132849 PATJ -539294 sc-eQTL 2.29e-01 -0.12 0.0996 0.29 CD8_TEM L2
ENSG00000162599 NFIA 337853 sc-eQTL 4.02e-01 -0.0867 0.103 0.29 CD8_TEM L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 9.53e-01 0.00601 0.102 0.29 CD8_TEM L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.96e-01 -0.0109 0.0831 0.29 MAIT L2
ENSG00000162599 NFIA 337853 sc-eQTL 9.73e-01 0.00322 0.0956 0.29 MAIT L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 9.60e-01 0.0047 0.0945 0.29 MAIT L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.38e-01 0.0196 0.0958 0.291 NK_CD56bright L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.18e-01 -0.118 0.0953 0.291 NK_CD56bright L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 8.70e-01 -0.016 0.0975 0.291 NK_CD56bright L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.32e-01 -0.0197 0.0927 0.295 NK_CD56dim L2
ENSG00000162599 NFIA 337853 sc-eQTL 6.19e-01 0.0464 0.0932 0.295 NK_CD56dim L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.28e-01 -0.0555 0.0879 0.295 NK_CD56dim L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.08e-01 0.0221 0.0908 0.297 NK_HLA L2
ENSG00000162599 NFIA 337853 sc-eQTL 1.18e-01 -0.151 0.0959 0.297 NK_HLA L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 3.34e-01 -0.0998 0.103 0.297 NK_HLA L2
ENSG00000132849 PATJ -539294 sc-eQTL 4.18e-01 -0.0765 0.0941 0.295 NK_cytokine L2
ENSG00000162599 NFIA 337853 sc-eQTL 8.90e-01 -0.0128 0.0925 0.295 NK_cytokine L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 6.31e-01 0.0443 0.0921 0.295 NK_cytokine L2
ENSG00000132849 PATJ -539294 sc-eQTL 5.07e-02 0.226 0.114 0.3 PB L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 7.39e-01 0.0377 0.113 0.3 PB L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.20e-01 -0.0205 0.0895 0.293 Pro_T L2
ENSG00000162599 NFIA 337853 sc-eQTL 9.03e-01 -0.0111 0.0907 0.293 Pro_T L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 9.22e-01 -0.00987 0.1 0.293 Pro_T L2
ENSG00000132849 PATJ -539294 sc-eQTL 8.63e-01 0.0154 0.0891 0.293 Treg L2
ENSG00000162599 NFIA 337853 sc-eQTL 1.86e-01 -0.125 0.0943 0.293 Treg L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.42e-01 0.0599 0.0981 0.293 Treg L2
ENSG00000162599 NFIA 337853 sc-eQTL 9.48e-01 0.006 0.0927 0.278 cDC L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.73e-01 0.149 0.109 0.278 cDC L2
ENSG00000162599 NFIA 337853 sc-eQTL 4.61e-01 0.0468 0.0635 0.293 cMono_IL1B L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 8.55e-01 0.0128 0.0701 0.293 cMono_IL1B L2
ENSG00000240563 L1TD1 -991737 sc-eQTL 7.64e-01 -0.0257 0.0853 0.293 cMono_IL1B L2
ENSG00000162599 NFIA 337853 sc-eQTL 6.67e-01 0.0305 0.0708 0.293 cMono_S100A L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 3.34e-01 0.0819 0.0846 0.293 cMono_S100A L2
ENSG00000240563 L1TD1 -991737 sc-eQTL 6.02e-01 0.0419 0.0802 0.293 cMono_S100A L2
ENSG00000132849 PATJ -539294 sc-eQTL 6.34e-01 -0.0522 0.11 0.3 gdT L2
ENSG00000162599 NFIA 337853 sc-eQTL 9.80e-01 -0.00285 0.112 0.3 gdT L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.28e-01 -0.176 0.115 0.3 gdT L2
ENSG00000162599 NFIA 337853 sc-eQTL 2.04e-01 -0.115 0.09 0.293 intMono L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.48e-01 0.06 0.0999 0.293 intMono L2
ENSG00000240563 L1TD1 -991737 sc-eQTL 1.04e-01 -0.126 0.0773 0.293 intMono L2
ENSG00000162599 NFIA 337853 sc-eQTL 8.57e-01 0.018 0.1 0.29 ncMono L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 6.48e-01 -0.0464 0.101 0.29 ncMono L2
ENSG00000240563 L1TD1 -991737 sc-eQTL 2.66e-01 0.0793 0.071 0.29 ncMono L2
ENSG00000162599 NFIA 337853 sc-eQTL 3.91e-01 0.0831 0.0965 0.288 pDC L2
ENSG00000162604 TM2D1 -522311 sc-eQTL 1.02e-02 -0.25 0.0961 0.288 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -539294 sc-eQTL 3.59e-01 -0.0729 0.0793 0.293 B_Memory LOneK1K
ENSG00000162604 TM2D1 -522311 sc-eQTL 4.55e-01 0.0674 0.0901 0.293 B_Memory LOneK1K
ENSG00000132849 PATJ -539294 sc-eQTL 8.05e-01 0.021 0.0848 0.293 B_Naive LOneK1K
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.65e-01 -0.0466 0.0809 0.293 B_Naive LOneK1K
ENSG00000162599 NFIA 337853 sc-eQTL 3.19e-01 0.0597 0.0598 0.293 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -522311 sc-eQTL 4.18e-01 0.053 0.0653 0.293 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 -991737 sc-eQTL 9.97e-01 -0.000368 0.086 0.293 CD14_Mono LOneK1K
ENSG00000162599 NFIA 337853 sc-eQTL 5.13e-01 -0.055 0.0839 0.295 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -522311 sc-eQTL 8.51e-01 0.0188 0.0996 0.295 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 -991737 sc-eQTL 5.67e-01 0.0363 0.0633 0.295 CD16_Mono LOneK1K
ENSG00000132849 PATJ -539294 sc-eQTL 3.59e-01 -0.0791 0.0862 0.295 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 337853 sc-eQTL 8.22e-01 0.0199 0.0884 0.295 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -522311 sc-eQTL 5.92e-01 -0.0425 0.0791 0.295 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000132849 \N -539294 2.61e-07 1.1e-07 3.39e-08 1.8e-07 9.02e-08 9.32e-08 3.11e-07 5.49e-08 1.4e-07 4.38e-08 1.62e-07 7.75e-08 1.59e-07 6.56e-08 6.12e-08 7.5e-08 4.48e-08 1.14e-07 5.2e-08 3.88e-08 1.04e-07 1.28e-07 1.69e-07 4.82e-08 1.5e-07 1.13e-07 1.12e-07 8.7e-08 1.24e-07 1.11e-07 9.73e-08 3.59e-08 2.74e-08 8.65e-08 7.66e-08 3.99e-08 5.64e-08 8.91e-08 7.52e-08 3.34e-08 3.8e-08 1.4e-07 5.24e-08 2.71e-08 6.38e-08 1.83e-08 1.37e-07 4.33e-09 4.74e-08