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Genes within 1Mb (chr1:61138764:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -603642 sc-eQTL 8.86e-01 0.00973 0.068 0.393 B L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 3.00e-01 -0.0704 0.0678 0.393 B L1
ENSG00000132849 PATJ -603642 sc-eQTL 5.37e-01 -0.0303 0.049 0.393 CD4T L1
ENSG00000162599 NFIA 273505 sc-eQTL 3.24e-01 0.0738 0.0746 0.393 CD4T L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.62e-01 -0.0833 0.0593 0.393 CD4T L1
ENSG00000132849 PATJ -603642 sc-eQTL 9.44e-01 -0.00337 0.0479 0.393 CD8T L1
ENSG00000162599 NFIA 273505 sc-eQTL 2.97e-01 0.0794 0.0759 0.393 CD8T L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.35e-01 -0.107 0.0715 0.393 CD8T L1
ENSG00000162599 NFIA 273505 sc-eQTL 3.94e-01 0.0659 0.0771 0.392 DC L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 6.02e-01 0.042 0.0803 0.392 DC L1
ENSG00000162599 NFIA 273505 sc-eQTL 5.06e-01 0.037 0.0555 0.393 Mono L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.72e-03 -0.192 0.0604 0.393 Mono L1
ENSG00000132849 PATJ -603642 sc-eQTL 4.91e-01 0.048 0.0695 0.393 NK L1
ENSG00000162599 NFIA 273505 sc-eQTL 9.87e-01 -0.00137 0.0809 0.393 NK L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.01e-02 -0.165 0.0704 0.393 NK L1
ENSG00000132849 PATJ -603642 sc-eQTL 1.69e-01 0.0888 0.0643 0.393 Other_T L1
ENSG00000162599 NFIA 273505 sc-eQTL 4.98e-01 0.0573 0.0844 0.393 Other_T L1
ENSG00000162604 TM2D1 -586659 sc-eQTL 9.07e-02 -0.128 0.0753 0.393 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -603642 sc-eQTL 8.63e-01 0.0145 0.0843 0.393 B_Activated L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 7.81e-01 -0.0299 0.107 0.393 B_Activated L2
ENSG00000132849 PATJ -603642 sc-eQTL 5.14e-01 0.0543 0.0832 0.393 B_Intermediate L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 8.09e-01 0.0212 0.0873 0.393 B_Intermediate L2
ENSG00000132849 PATJ -603642 sc-eQTL 3.51e-01 0.0793 0.0848 0.397 B_Memory L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.50e-01 -0.0723 0.0954 0.397 B_Memory L2
ENSG00000132849 PATJ -603642 sc-eQTL 6.36e-01 0.042 0.0887 0.393 B_Naive1 L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 6.33e-01 -0.039 0.0815 0.393 B_Naive1 L2
ENSG00000132849 PATJ -603642 sc-eQTL 5.25e-01 -0.0581 0.0913 0.395 B_Naive2 L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.29e-01 -0.0732 0.0924 0.395 B_Naive2 L2
ENSG00000132849 PATJ -603642 sc-eQTL 1.15e-01 -0.112 0.0708 0.398 CD4_CTL L2
ENSG00000162599 NFIA 273505 sc-eQTL 3.02e-01 0.0894 0.0864 0.398 CD4_CTL L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 5.57e-01 -0.0536 0.091 0.398 CD4_CTL L2
ENSG00000132849 PATJ -603642 sc-eQTL 2.51e-01 -0.0573 0.0497 0.393 CD4_Naive L2
ENSG00000162599 NFIA 273505 sc-eQTL 4.11e-01 0.0645 0.0782 0.393 CD4_Naive L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 6.37e-01 -0.0338 0.0717 0.393 CD4_Naive L2
ENSG00000132849 PATJ -603642 sc-eQTL 3.27e-01 -0.0616 0.0627 0.393 CD4_TCM L2
ENSG00000162599 NFIA 273505 sc-eQTL 9.59e-01 -0.0043 0.0845 0.393 CD4_TCM L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 8.68e-01 -0.0122 0.0733 0.393 CD4_TCM L2
ENSG00000132849 PATJ -603642 sc-eQTL 6.38e-02 0.152 0.0814 0.393 CD4_TEM L2
ENSG00000162599 NFIA 273505 sc-eQTL 1.19e-01 0.142 0.0909 0.393 CD4_TEM L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.04e-01 -0.14 0.0859 0.393 CD4_TEM L2
ENSG00000132849 PATJ -603642 sc-eQTL 7.32e-01 0.0288 0.084 0.393 CD8_CTL L2
ENSG00000162599 NFIA 273505 sc-eQTL 6.62e-01 0.0388 0.0887 0.393 CD8_CTL L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.67e-01 -0.0855 0.0768 0.393 CD8_CTL L2
ENSG00000132849 PATJ -603642 sc-eQTL 2.89e-01 -0.0711 0.0669 0.393 CD8_Naive L2
ENSG00000162599 NFIA 273505 sc-eQTL 1.54e-02 0.211 0.0863 0.393 CD8_Naive L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.52e-01 -0.0938 0.0817 0.393 CD8_Naive L2
ENSG00000132849 PATJ -603642 sc-eQTL 3.95e-01 -0.074 0.0869 0.394 CD8_TCM L2
ENSG00000162599 NFIA 273505 sc-eQTL 1.37e-01 -0.139 0.0932 0.394 CD8_TCM L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.53e-01 -0.126 0.088 0.394 CD8_TCM L2
ENSG00000132849 PATJ -603642 sc-eQTL 8.32e-01 0.0191 0.0899 0.393 CD8_TEM L2
ENSG00000162599 NFIA 273505 sc-eQTL 9.39e-01 0.00709 0.093 0.393 CD8_TEM L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 5.63e-01 -0.053 0.0914 0.393 CD8_TEM L2
ENSG00000132849 PATJ -603642 sc-eQTL 6.04e-01 0.0396 0.0763 0.396 MAIT L2
ENSG00000162599 NFIA 273505 sc-eQTL 7.73e-01 0.0254 0.0878 0.396 MAIT L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.50e-01 -0.0657 0.0867 0.396 MAIT L2
ENSG00000132849 PATJ -603642 sc-eQTL 2.57e-01 -0.0994 0.0874 0.391 NK_CD56bright L2
ENSG00000162599 NFIA 273505 sc-eQTL 2.98e-01 -0.091 0.0872 0.391 NK_CD56bright L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.95e-01 -0.0934 0.089 0.391 NK_CD56bright L2
ENSG00000132849 PATJ -603642 sc-eQTL 2.31e-01 0.104 0.0867 0.39 NK_CD56dim L2
ENSG00000162599 NFIA 273505 sc-eQTL 5.30e-01 0.0551 0.0875 0.39 NK_CD56dim L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.71e-01 -0.091 0.0824 0.39 NK_CD56dim L2
ENSG00000132849 PATJ -603642 sc-eQTL 7.40e-01 -0.0274 0.0824 0.381 NK_HLA L2
ENSG00000162599 NFIA 273505 sc-eQTL 9.80e-01 -0.00217 0.0876 0.381 NK_HLA L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.53e-01 0.0704 0.0935 0.381 NK_HLA L2
ENSG00000132849 PATJ -603642 sc-eQTL 5.67e-01 0.0509 0.0889 0.39 NK_cytokine L2
ENSG00000162599 NFIA 273505 sc-eQTL 8.07e-01 -0.0214 0.0872 0.39 NK_cytokine L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.42e-01 -0.128 0.0865 0.39 NK_cytokine L2
ENSG00000132849 PATJ -603642 sc-eQTL 9.78e-01 -0.00306 0.112 0.396 PB L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.86e-01 0.0761 0.109 0.396 PB L2
ENSG00000132849 PATJ -603642 sc-eQTL 6.61e-01 -0.0361 0.0821 0.393 Pro_T L2
ENSG00000162599 NFIA 273505 sc-eQTL 8.71e-01 0.0135 0.0832 0.393 Pro_T L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 8.84e-01 0.0134 0.092 0.393 Pro_T L2
ENSG00000132849 PATJ -603642 sc-eQTL 5.27e-01 0.052 0.0821 0.393 Treg L2
ENSG00000162599 NFIA 273505 sc-eQTL 5.37e-01 0.0538 0.0871 0.393 Treg L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 8.28e-01 0.0197 0.0905 0.393 Treg L2
ENSG00000162599 NFIA 273505 sc-eQTL 1.76e-01 0.111 0.0817 0.388 cDC L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 3.14e-01 0.0975 0.0965 0.388 cDC L2
ENSG00000162599 NFIA 273505 sc-eQTL 8.12e-01 0.0143 0.06 0.393 cMono_IL1B L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.46e-01 -0.0961 0.0659 0.393 cMono_IL1B L2
ENSG00000162599 NFIA 273505 sc-eQTL 8.45e-01 0.0128 0.0654 0.393 cMono_S100A L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.29e-02 -0.194 0.0772 0.393 cMono_S100A L2
ENSG00000132849 PATJ -603642 sc-eQTL 5.42e-01 0.0599 0.0981 0.388 gdT L2
ENSG00000162599 NFIA 273505 sc-eQTL 1.46e-01 0.146 0.0997 0.388 gdT L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 1.25e-01 -0.158 0.103 0.388 gdT L2
ENSG00000162599 NFIA 273505 sc-eQTL 9.25e-01 0.00787 0.083 0.391 intMono L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.49e-01 0.106 0.0915 0.391 intMono L2
ENSG00000162599 NFIA 273505 sc-eQTL 3.74e-01 0.0828 0.0929 0.391 ncMono L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 3.66e-02 -0.196 0.0934 0.391 ncMono L2
ENSG00000162599 NFIA 273505 sc-eQTL 3.54e-01 -0.0814 0.0875 0.401 pDC L2
ENSG00000162604 TM2D1 -586659 sc-eQTL 5.87e-01 -0.0484 0.089 0.401 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -603642 sc-eQTL 2.70e-01 0.0821 0.0743 0.393 B_Memory LOneK1K
ENSG00000162604 TM2D1 -586659 sc-eQTL 4.57e-01 -0.063 0.0845 0.393 B_Memory LOneK1K
ENSG00000132849 PATJ -603642 sc-eQTL 8.80e-01 0.0121 0.0802 0.393 B_Naive LOneK1K
ENSG00000162604 TM2D1 -586659 sc-eQTL 3.79e-01 -0.0673 0.0764 0.393 B_Naive LOneK1K
ENSG00000162599 NFIA 273505 sc-eQTL 6.05e-01 0.0289 0.0559 0.393 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -586659 sc-eQTL 2.82e-03 -0.181 0.0598 0.393 CD14_Mono LOneK1K
ENSG00000162599 NFIA 273505 sc-eQTL 6.52e-02 0.146 0.0787 0.39 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -586659 sc-eQTL 7.42e-02 -0.168 0.0934 0.39 CD16_Mono LOneK1K
ENSG00000132849 PATJ -603642 sc-eQTL 9.05e-02 0.136 0.08 0.39 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 273505 sc-eQTL 7.97e-01 0.0212 0.0825 0.39 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -586659 sc-eQTL 7.06e-02 -0.133 0.0732 0.39 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA 273505 eQTL 0.00141 0.0707 0.0221 0.0 0.0 0.349

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162599 NFIA 273505 4.34e-06 4.74e-06 6.56e-07 2.68e-06 6.82e-07 1.09e-06 3.23e-06 9.75e-07 4.36e-06 1.65e-06 3.74e-06 2.24e-06 6.47e-06 2.01e-06 1.09e-06 3.05e-06 1.95e-06 2.79e-06 1.31e-06 1.01e-06 1.93e-06 4.35e-06 3.36e-06 1.66e-06 4.51e-06 1.24e-06 2.35e-06 1.44e-06 3.78e-06 3.32e-06 1.98e-06 5.11e-07 4.86e-07 1.35e-06 1.97e-06 1.02e-06 9.55e-07 4.92e-07 8.13e-07 3.64e-07 2.88e-07 3.84e-06 6.86e-07 1.82e-07 3.6e-07 6.57e-07 8.68e-07 2.26e-07 2.09e-07