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Genes within 1Mb (chr1:60990690:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -751716 sc-eQTL 5.11e-01 0.0543 0.0825 0.244 B L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 7.64e-01 -0.0248 0.0825 0.244 B L1
ENSG00000132849 PATJ -751716 sc-eQTL 7.92e-01 0.0157 0.0593 0.244 CD4T L1
ENSG00000162599 NFIA 125431 sc-eQTL 7.61e-01 0.0275 0.0904 0.244 CD4T L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.44e-01 0.0682 0.072 0.244 CD4T L1
ENSG00000132849 PATJ -751716 sc-eQTL 7.34e-01 -0.0197 0.0579 0.244 CD8T L1
ENSG00000162599 NFIA 125431 sc-eQTL 1.16e-01 0.144 0.0915 0.244 CD8T L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.87e-02 0.179 0.086 0.244 CD8T L1
ENSG00000162599 NFIA 125431 sc-eQTL 8.63e-01 0.016 0.0931 0.239 DC L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.24e-01 -0.0956 0.0966 0.239 DC L1
ENSG00000162599 NFIA 125431 sc-eQTL 8.36e-01 -0.0138 0.0666 0.244 Mono L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 4.44e-02 -0.148 0.0734 0.244 Mono L1
ENSG00000132849 PATJ -751716 sc-eQTL 1.70e-01 0.117 0.085 0.242 NK L1
ENSG00000162599 NFIA 125431 sc-eQTL 7.28e-01 0.0346 0.0993 0.242 NK L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 4.40e-01 -0.0676 0.0873 0.242 NK L1
ENSG00000132849 PATJ -751716 sc-eQTL 7.88e-01 -0.0213 0.0793 0.244 Other_T L1
ENSG00000162599 NFIA 125431 sc-eQTL 9.17e-01 0.0108 0.104 0.244 Other_T L1
ENSG00000162604 TM2D1 -734733 sc-eQTL 8.31e-03 0.244 0.0915 0.244 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -751716 sc-eQTL 1.36e-01 0.155 0.103 0.235 B_Activated L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.68e-01 0.00533 0.132 0.235 B_Activated L2
ENSG00000132849 PATJ -751716 sc-eQTL 9.00e-01 0.0127 0.101 0.245 B_Intermediate L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.11e-01 0.107 0.106 0.245 B_Intermediate L2
ENSG00000132849 PATJ -751716 sc-eQTL 8.33e-01 -0.0214 0.102 0.246 B_Memory L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 4.05e-01 -0.0953 0.114 0.246 B_Memory L2
ENSG00000132849 PATJ -751716 sc-eQTL 6.38e-01 0.0502 0.107 0.244 B_Naive1 L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 5.68e-01 0.0561 0.098 0.244 B_Naive1 L2
ENSG00000132849 PATJ -751716 sc-eQTL 6.17e-01 0.0542 0.108 0.245 B_Naive2 L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 6.81e-01 -0.045 0.109 0.245 B_Naive2 L2
ENSG00000132849 PATJ -751716 sc-eQTL 6.17e-01 -0.0437 0.0872 0.243 CD4_CTL L2
ENSG00000162599 NFIA 125431 sc-eQTL 9.77e-01 -0.00311 0.106 0.243 CD4_CTL L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.12e-01 0.0123 0.112 0.243 CD4_CTL L2
ENSG00000132849 PATJ -751716 sc-eQTL 8.00e-01 0.0152 0.0602 0.244 CD4_Naive L2
ENSG00000162599 NFIA 125431 sc-eQTL 8.82e-01 -0.0141 0.0946 0.244 CD4_Naive L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.74e-01 -0.0028 0.0866 0.244 CD4_Naive L2
ENSG00000132849 PATJ -751716 sc-eQTL 1.00e-02 -0.197 0.0758 0.244 CD4_TCM L2
ENSG00000162599 NFIA 125431 sc-eQTL 3.29e-01 -0.101 0.103 0.244 CD4_TCM L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 8.12e-02 0.156 0.0892 0.244 CD4_TCM L2
ENSG00000132849 PATJ -751716 sc-eQTL 6.66e-01 0.043 0.0995 0.244 CD4_TEM L2
ENSG00000162599 NFIA 125431 sc-eQTL 8.69e-01 0.0183 0.111 0.244 CD4_TEM L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.42e-01 0.0995 0.105 0.244 CD4_TEM L2
ENSG00000132849 PATJ -751716 sc-eQTL 4.52e-01 -0.0774 0.103 0.244 CD8_CTL L2
ENSG00000162599 NFIA 125431 sc-eQTL 5.39e-01 0.0669 0.109 0.244 CD8_CTL L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 7.35e-01 0.0319 0.0943 0.244 CD8_CTL L2
ENSG00000132849 PATJ -751716 sc-eQTL 7.88e-01 -0.0218 0.0809 0.244 CD8_Naive L2
ENSG00000162599 NFIA 125431 sc-eQTL 5.17e-01 0.0685 0.105 0.244 CD8_Naive L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 5.54e-02 0.189 0.098 0.244 CD8_Naive L2
ENSG00000132849 PATJ -751716 sc-eQTL 8.28e-02 -0.191 0.109 0.236 CD8_TCM L2
ENSG00000162599 NFIA 125431 sc-eQTL 3.05e-01 0.122 0.118 0.236 CD8_TCM L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 5.96e-01 0.0595 0.112 0.236 CD8_TCM L2
ENSG00000132849 PATJ -751716 sc-eQTL 2.47e-01 0.124 0.107 0.247 CD8_TEM L2
ENSG00000162599 NFIA 125431 sc-eQTL 9.04e-01 0.0133 0.111 0.247 CD8_TEM L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.46e-01 0.103 0.109 0.247 CD8_TEM L2
ENSG00000132849 PATJ -751716 sc-eQTL 3.78e-01 0.0823 0.0932 0.245 MAIT L2
ENSG00000162599 NFIA 125431 sc-eQTL 2.50e-01 0.123 0.107 0.245 MAIT L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 3.03e-01 0.109 0.106 0.245 MAIT L2
ENSG00000132849 PATJ -751716 sc-eQTL 4.74e-01 0.0795 0.111 0.238 NK_CD56bright L2
ENSG00000162599 NFIA 125431 sc-eQTL 9.77e-01 -0.0032 0.111 0.238 NK_CD56bright L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 2.59e-01 0.128 0.113 0.238 NK_CD56bright L2
ENSG00000132849 PATJ -751716 sc-eQTL 2.15e-02 0.245 0.106 0.244 NK_CD56dim L2
ENSG00000162599 NFIA 125431 sc-eQTL 7.72e-01 -0.0314 0.108 0.244 NK_CD56dim L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 2.79e-01 -0.11 0.102 0.244 NK_CD56dim L2
ENSG00000132849 PATJ -751716 sc-eQTL 5.85e-01 0.0558 0.102 0.242 NK_HLA L2
ENSG00000162599 NFIA 125431 sc-eQTL 2.03e-01 0.138 0.108 0.242 NK_HLA L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.51e-01 0.167 0.115 0.242 NK_HLA L2
ENSG00000132849 PATJ -751716 sc-eQTL 5.28e-01 -0.0684 0.108 0.244 NK_cytokine L2
ENSG00000162599 NFIA 125431 sc-eQTL 5.87e-01 -0.0577 0.106 0.244 NK_cytokine L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.74e-01 -0.144 0.105 0.244 NK_cytokine L2
ENSG00000132849 PATJ -751716 sc-eQTL 9.86e-01 -0.00248 0.138 0.237 PB L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 4.91e-01 -0.0924 0.134 0.237 PB L2
ENSG00000132849 PATJ -751716 sc-eQTL 4.41e-02 -0.204 0.101 0.243 Pro_T L2
ENSG00000162599 NFIA 125431 sc-eQTL 6.57e-01 -0.0459 0.103 0.243 Pro_T L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 2.72e-01 0.125 0.114 0.243 Pro_T L2
ENSG00000132849 PATJ -751716 sc-eQTL 5.61e-01 0.0589 0.101 0.244 Treg L2
ENSG00000162599 NFIA 125431 sc-eQTL 6.80e-01 0.0444 0.107 0.244 Treg L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.46e-01 -0.162 0.111 0.244 Treg L2
ENSG00000162599 NFIA 125431 sc-eQTL 6.46e-01 -0.0467 0.102 0.239 cDC L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.15e-01 -0.0128 0.12 0.239 cDC L2
ENSG00000162599 NFIA 125431 sc-eQTL 7.89e-01 -0.0189 0.0707 0.244 cMono_IL1B L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.25e-03 -0.249 0.0761 0.244 cMono_IL1B L2
ENSG00000162599 NFIA 125431 sc-eQTL 7.93e-01 0.0204 0.0776 0.244 cMono_S100A L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.25e-01 -0.00876 0.0929 0.244 cMono_S100A L2
ENSG00000132849 PATJ -751716 sc-eQTL 5.14e-03 -0.344 0.121 0.227 gdT L2
ENSG00000162599 NFIA 125431 sc-eQTL 3.37e-01 -0.122 0.127 0.227 gdT L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 6.72e-01 -0.0556 0.131 0.227 gdT L2
ENSG00000162599 NFIA 125431 sc-eQTL 5.42e-01 -0.0607 0.0994 0.244 intMono L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 2.33e-01 0.131 0.11 0.244 intMono L2
ENSG00000162599 NFIA 125431 sc-eQTL 6.89e-01 0.0437 0.109 0.244 ncMono L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 7.98e-01 -0.0283 0.11 0.244 ncMono L2
ENSG00000162599 NFIA 125431 sc-eQTL 7.72e-01 -0.0306 0.106 0.24 pDC L2
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.81e-01 -0.00254 0.107 0.24 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -751716 sc-eQTL 7.07e-01 -0.0341 0.0906 0.244 B_Memory LOneK1K
ENSG00000162604 TM2D1 -734733 sc-eQTL 6.62e-01 -0.045 0.103 0.244 B_Memory LOneK1K
ENSG00000132849 PATJ -751716 sc-eQTL 5.31e-01 0.0598 0.0953 0.244 B_Naive LOneK1K
ENSG00000162604 TM2D1 -734733 sc-eQTL 9.45e-01 0.00631 0.091 0.244 B_Naive LOneK1K
ENSG00000162599 NFIA 125431 sc-eQTL 8.79e-01 0.0102 0.0669 0.244 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.22e-02 -0.182 0.0719 0.244 CD14_Mono LOneK1K
ENSG00000162599 NFIA 125431 sc-eQTL 6.39e-01 -0.0438 0.0934 0.241 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -734733 sc-eQTL 5.23e-01 0.0707 0.111 0.241 CD16_Mono LOneK1K
ENSG00000132849 PATJ -751716 sc-eQTL 3.42e-01 0.0938 0.0985 0.244 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 125431 sc-eQTL 9.05e-01 0.0121 0.101 0.244 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -734733 sc-eQTL 1.84e-01 -0.12 0.0901 0.244 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA 125431 eQTL 0.00072 0.0811 0.0239 0.0 0.0 0.239

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162599 NFIA 125431 1.11e-05 1.36e-05 1.35e-06 5e-06 2.36e-06 4.21e-06 1.37e-05 1.58e-06 9.81e-06 5.31e-06 1.23e-05 5.28e-06 1.55e-05 3.63e-06 2.49e-06 6.63e-06 4.52e-06 7.71e-06 2.64e-06 2.41e-06 4.72e-06 1.01e-05 1.01e-05 2.76e-06 2.04e-05 3.55e-06 4.74e-06 4.25e-06 1.12e-05 7.8e-06 5.67e-06 7.64e-07 7.8e-07 2.63e-06 2.69e-06 1.14e-06 1.07e-06 4.51e-07 1.6e-06 1.02e-06 4.03e-07 1.82e-05 1.39e-06 2.71e-07 7.38e-07 1.02e-06 9.85e-07 7.35e-07 3.41e-07