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Genes within 1Mb (chr1:60982134:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -760272 sc-eQTL 3.92e-02 -0.138 0.0664 0.363 B L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.61e-02 -0.123 0.0665 0.363 B L1
ENSG00000132849 PATJ -760272 sc-eQTL 2.47e-01 -0.0574 0.0494 0.363 CD4T L1
ENSG00000162599 NFIA 116875 sc-eQTL 9.36e-01 0.00609 0.0756 0.363 CD4T L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.50e-01 -0.0192 0.0602 0.363 CD4T L1
ENSG00000132849 PATJ -760272 sc-eQTL 9.81e-01 0.00115 0.0477 0.363 CD8T L1
ENSG00000162599 NFIA 116875 sc-eQTL 2.00e-01 -0.0972 0.0756 0.363 CD8T L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.06e-01 -0.0271 0.0716 0.363 CD8T L1
ENSG00000162599 NFIA 116875 sc-eQTL 5.35e-01 0.0467 0.0751 0.372 DC L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 2.95e-01 0.082 0.078 0.372 DC L1
ENSG00000162599 NFIA 116875 sc-eQTL 9.83e-01 0.00118 0.0545 0.363 Mono L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.90e-01 -0.0162 0.0607 0.363 Mono L1
ENSG00000132849 PATJ -760272 sc-eQTL 3.60e-01 -0.0642 0.0701 0.365 NK L1
ENSG00000162599 NFIA 116875 sc-eQTL 8.11e-02 -0.142 0.081 0.365 NK L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.71e-01 -0.0984 0.0716 0.365 NK L1
ENSG00000132849 PATJ -760272 sc-eQTL 3.22e-01 -0.0642 0.0647 0.363 Other_T L1
ENSG00000162599 NFIA 116875 sc-eQTL 5.30e-01 0.0533 0.0847 0.363 Other_T L1
ENSG00000162604 TM2D1 -743289 sc-eQTL 4.37e-02 -0.153 0.0753 0.363 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -760272 sc-eQTL 9.83e-01 -0.00182 0.0878 0.372 B_Activated L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 4.96e-01 -0.076 0.111 0.372 B_Activated L2
ENSG00000132849 PATJ -760272 sc-eQTL 5.61e-01 -0.0473 0.0813 0.363 B_Intermediate L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 8.02e-01 0.0214 0.0854 0.363 B_Intermediate L2
ENSG00000132849 PATJ -760272 sc-eQTL 7.73e-01 0.024 0.0831 0.364 B_Memory L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.37e-01 -0.0442 0.0934 0.364 B_Memory L2
ENSG00000132849 PATJ -760272 sc-eQTL 6.63e-01 -0.0385 0.0882 0.363 B_Naive1 L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.16e-01 -0.127 0.0807 0.363 B_Naive1 L2
ENSG00000132849 PATJ -760272 sc-eQTL 1.03e-01 -0.146 0.0891 0.365 B_Naive2 L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 8.55e-01 0.0167 0.0908 0.365 B_Naive2 L2
ENSG00000132849 PATJ -760272 sc-eQTL 7.33e-01 0.0247 0.0723 0.364 CD4_CTL L2
ENSG00000162599 NFIA 116875 sc-eQTL 9.36e-01 -0.00712 0.0879 0.364 CD4_CTL L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.35e-01 0.0439 0.0924 0.364 CD4_CTL L2
ENSG00000132849 PATJ -760272 sc-eQTL 8.52e-01 -0.00936 0.05 0.363 CD4_Naive L2
ENSG00000162599 NFIA 116875 sc-eQTL 3.49e-01 0.0736 0.0783 0.363 CD4_Naive L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 5.03e-01 -0.0482 0.0718 0.363 CD4_Naive L2
ENSG00000132849 PATJ -760272 sc-eQTL 2.52e-03 -0.189 0.0619 0.363 CD4_TCM L2
ENSG00000162599 NFIA 116875 sc-eQTL 9.06e-01 0.0101 0.085 0.363 CD4_TCM L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.72e-01 -0.0313 0.0737 0.363 CD4_TCM L2
ENSG00000132849 PATJ -760272 sc-eQTL 1.25e-01 0.126 0.0815 0.363 CD4_TEM L2
ENSG00000162599 NFIA 116875 sc-eQTL 6.68e-01 -0.0392 0.0913 0.363 CD4_TEM L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.02e-01 -0.141 0.0858 0.363 CD4_TEM L2
ENSG00000132849 PATJ -760272 sc-eQTL 8.53e-01 -0.0157 0.0847 0.363 CD8_CTL L2
ENSG00000162599 NFIA 116875 sc-eQTL 1.57e-01 -0.127 0.089 0.363 CD8_CTL L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 5.76e-01 -0.0435 0.0776 0.363 CD8_CTL L2
ENSG00000132849 PATJ -760272 sc-eQTL 8.38e-01 -0.0139 0.0679 0.363 CD8_Naive L2
ENSG00000162599 NFIA 116875 sc-eQTL 9.42e-01 0.00651 0.0886 0.363 CD8_Naive L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 8.67e-01 0.014 0.0829 0.363 CD8_Naive L2
ENSG00000132849 PATJ -760272 sc-eQTL 6.35e-01 -0.0412 0.0866 0.375 CD8_TCM L2
ENSG00000162599 NFIA 116875 sc-eQTL 1.29e-01 -0.141 0.0928 0.375 CD8_TCM L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 9.31e-01 0.00766 0.0881 0.375 CD8_TCM L2
ENSG00000132849 PATJ -760272 sc-eQTL 1.43e-01 -0.14 0.0952 0.347 CD8_TEM L2
ENSG00000162599 NFIA 116875 sc-eQTL 9.41e-01 0.00734 0.0991 0.347 CD8_TEM L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 2.68e-01 -0.108 0.0971 0.347 CD8_TEM L2
ENSG00000132849 PATJ -760272 sc-eQTL 1.46e-02 -0.185 0.0752 0.359 MAIT L2
ENSG00000162599 NFIA 116875 sc-eQTL 7.41e-01 0.029 0.0877 0.359 MAIT L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 2.80e-02 -0.19 0.0857 0.359 MAIT L2
ENSG00000132849 PATJ -760272 sc-eQTL 3.85e-01 -0.0778 0.0893 0.367 NK_CD56bright L2
ENSG00000162599 NFIA 116875 sc-eQTL 9.09e-01 -0.0102 0.0893 0.367 NK_CD56bright L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.94e-01 0.118 0.0907 0.367 NK_CD56bright L2
ENSG00000132849 PATJ -760272 sc-eQTL 4.44e-01 -0.067 0.0874 0.362 NK_CD56dim L2
ENSG00000162599 NFIA 116875 sc-eQTL 1.02e-01 -0.144 0.0875 0.362 NK_CD56dim L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 5.16e-01 -0.054 0.083 0.362 NK_CD56dim L2
ENSG00000132849 PATJ -760272 sc-eQTL 1.81e-01 -0.112 0.0835 0.361 NK_HLA L2
ENSG00000162599 NFIA 116875 sc-eQTL 3.66e-01 -0.0806 0.0889 0.361 NK_HLA L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 4.36e-01 -0.0742 0.0952 0.361 NK_HLA L2
ENSG00000132849 PATJ -760272 sc-eQTL 4.43e-01 0.0685 0.089 0.362 NK_cytokine L2
ENSG00000162599 NFIA 116875 sc-eQTL 6.65e-02 -0.16 0.0867 0.362 NK_cytokine L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.04e-01 -0.0453 0.0871 0.362 NK_cytokine L2
ENSG00000132849 PATJ -760272 sc-eQTL 7.29e-01 -0.0367 0.106 0.37 PB L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 5.88e-01 0.0558 0.103 0.37 PB L2
ENSG00000132849 PATJ -760272 sc-eQTL 3.48e-01 0.0772 0.082 0.363 Pro_T L2
ENSG00000162599 NFIA 116875 sc-eQTL 6.11e-01 -0.0424 0.0832 0.363 Pro_T L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.09e-01 0.0344 0.092 0.363 Pro_T L2
ENSG00000132849 PATJ -760272 sc-eQTL 5.36e-01 -0.0512 0.0827 0.363 Treg L2
ENSG00000162599 NFIA 116875 sc-eQTL 3.77e-01 -0.0776 0.0877 0.363 Treg L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 2.79e-02 0.199 0.0901 0.363 Treg L2
ENSG00000162599 NFIA 116875 sc-eQTL 4.40e-01 0.0639 0.0826 0.363 cDC L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 8.78e-02 0.166 0.0967 0.363 cDC L2
ENSG00000162599 NFIA 116875 sc-eQTL 7.43e-01 0.0191 0.0581 0.363 cMono_IL1B L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.58e-01 -0.0198 0.0641 0.363 cMono_IL1B L2
ENSG00000162599 NFIA 116875 sc-eQTL 6.11e-01 -0.0326 0.0641 0.363 cMono_S100A L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 9.32e-01 -0.00655 0.0768 0.363 cMono_S100A L2
ENSG00000132849 PATJ -760272 sc-eQTL 2.02e-01 -0.126 0.0985 0.391 gdT L2
ENSG00000162599 NFIA 116875 sc-eQTL 5.18e-01 0.0656 0.101 0.391 gdT L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.40e-01 0.0488 0.104 0.391 gdT L2
ENSG00000162599 NFIA 116875 sc-eQTL 5.93e-01 0.0431 0.0803 0.364 intMono L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.69e-01 0.122 0.0885 0.364 intMono L2
ENSG00000162599 NFIA 116875 sc-eQTL 3.62e-01 0.0827 0.0904 0.364 ncMono L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.61e-01 -0.0279 0.0919 0.364 ncMono L2
ENSG00000162599 NFIA 116875 sc-eQTL 5.68e-01 0.0485 0.0848 0.379 pDC L2
ENSG00000162604 TM2D1 -743289 sc-eQTL 5.91e-01 -0.0463 0.0861 0.379 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -760272 sc-eQTL 9.72e-01 -0.0026 0.073 0.363 B_Memory LOneK1K
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.73e-01 -0.0351 0.0828 0.363 B_Memory LOneK1K
ENSG00000132849 PATJ -760272 sc-eQTL 2.03e-01 -0.101 0.0789 0.363 B_Naive LOneK1K
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.68e-01 -0.104 0.0753 0.363 B_Naive LOneK1K
ENSG00000162599 NFIA 116875 sc-eQTL 8.59e-01 -0.00984 0.0553 0.363 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -743289 sc-eQTL 6.74e-01 -0.0254 0.0603 0.363 CD14_Mono LOneK1K
ENSG00000162599 NFIA 116875 sc-eQTL 3.63e-02 0.16 0.0757 0.364 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -743289 sc-eQTL 7.59e-01 0.0279 0.0907 0.364 CD16_Mono LOneK1K
ENSG00000132849 PATJ -760272 sc-eQTL 4.90e-01 -0.0561 0.0811 0.362 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 116875 sc-eQTL 6.64e-02 -0.152 0.0825 0.362 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -743289 sc-eQTL 1.43e-01 -0.109 0.0741 0.362 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162598 C1orf87 908364 eQTL 0.00529 0.0823 0.0294 0.00348 0.0 0.361
ENSG00000162599 NFIA 116875 eQTL 0.017 -0.0514 0.0215 0.0 0.0 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina