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Genes within 1Mb (chr1:60969403:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -773003 sc-eQTL 4.72e-02 -0.128 0.0641 0.368 B L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 1.44e-01 -0.0944 0.0643 0.368 B L1
ENSG00000132849 PATJ -773003 sc-eQTL 3.78e-01 -0.0417 0.0472 0.368 CD4T L1
ENSG00000162599 NFIA 104144 sc-eQTL 3.61e-01 0.0659 0.0719 0.368 CD4T L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.39e-01 0.0677 0.0573 0.368 CD4T L1
ENSG00000132849 PATJ -773003 sc-eQTL 4.67e-01 -0.033 0.0453 0.368 CD8T L1
ENSG00000162599 NFIA 104144 sc-eQTL 2.30e-01 -0.0865 0.0718 0.368 CD8T L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 4.04e-01 -0.0569 0.0679 0.368 CD8T L1
ENSG00000162599 NFIA 104144 sc-eQTL 8.71e-01 0.0119 0.0731 0.367 DC L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.77e-01 -0.0117 0.076 0.367 DC L1
ENSG00000162599 NFIA 104144 sc-eQTL 5.55e-01 0.0308 0.0521 0.368 Mono L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 9.94e-01 -0.000434 0.0581 0.368 Mono L1
ENSG00000132849 PATJ -773003 sc-eQTL 1.17e-01 -0.104 0.0662 0.369 NK L1
ENSG00000162599 NFIA 104144 sc-eQTL 8.55e-02 -0.133 0.0768 0.369 NK L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 6.65e-01 -0.0295 0.0681 0.369 NK L1
ENSG00000132849 PATJ -773003 sc-eQTL 5.57e-01 -0.037 0.0629 0.368 Other_T L1
ENSG00000162599 NFIA 104144 sc-eQTL 4.18e-01 0.0667 0.0822 0.368 Other_T L1
ENSG00000162604 TM2D1 -756020 sc-eQTL 6.39e-02 -0.136 0.0732 0.368 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -773003 sc-eQTL 5.45e-01 0.0494 0.0814 0.37 B_Activated L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 7.98e-01 -0.0266 0.104 0.37 B_Activated L2
ENSG00000132849 PATJ -773003 sc-eQTL 1.77e-01 -0.108 0.0799 0.367 B_Intermediate L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.97e-01 -0.0109 0.0842 0.367 B_Intermediate L2
ENSG00000132849 PATJ -773003 sc-eQTL 6.74e-01 -0.0337 0.0798 0.366 B_Memory L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 9.91e-01 0.000975 0.0898 0.366 B_Memory L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.69e-01 -0.0926 0.0836 0.368 B_Naive1 L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.36e-01 -0.0913 0.0768 0.368 B_Naive1 L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.98e-01 -0.0888 0.0851 0.369 B_Naive2 L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 6.05e-01 -0.0448 0.0863 0.369 B_Naive2 L2
ENSG00000132849 PATJ -773003 sc-eQTL 3.36e-02 0.146 0.0682 0.368 CD4_CTL L2
ENSG00000162599 NFIA 104144 sc-eQTL 4.64e-01 -0.0615 0.0837 0.368 CD4_CTL L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.43e-01 0.0175 0.0882 0.368 CD4_CTL L2
ENSG00000132849 PATJ -773003 sc-eQTL 4.87e-01 -0.0334 0.048 0.368 CD4_Naive L2
ENSG00000162599 NFIA 104144 sc-eQTL 2.19e-01 0.0927 0.0752 0.368 CD4_Naive L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.82e-01 0.0743 0.0689 0.368 CD4_Naive L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.43e-01 -0.0709 0.0606 0.368 CD4_TCM L2
ENSG00000162599 NFIA 104144 sc-eQTL 7.98e-01 0.0209 0.0817 0.368 CD4_TCM L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 5.67e-01 0.0407 0.0708 0.368 CD4_TCM L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.99e-01 0.0811 0.0778 0.368 CD4_TEM L2
ENSG00000162599 NFIA 104144 sc-eQTL 2.63e-01 0.0974 0.0867 0.368 CD4_TEM L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.50e-01 -0.0946 0.0819 0.368 CD4_TEM L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.40e-01 -0.0947 0.0804 0.368 CD8_CTL L2
ENSG00000162599 NFIA 104144 sc-eQTL 1.59e-01 -0.12 0.0848 0.368 CD8_CTL L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 4.10e-01 -0.0611 0.0739 0.368 CD8_CTL L2
ENSG00000132849 PATJ -773003 sc-eQTL 9.83e-01 -0.00143 0.0653 0.368 CD8_Naive L2
ENSG00000162599 NFIA 104144 sc-eQTL 7.23e-01 -0.0303 0.0852 0.368 CD8_Naive L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.78e-01 0.0123 0.0798 0.368 CD8_Naive L2
ENSG00000132849 PATJ -773003 sc-eQTL 7.56e-01 -0.0259 0.0831 0.37 CD8_TCM L2
ENSG00000162599 NFIA 104144 sc-eQTL 4.55e-01 -0.0669 0.0894 0.37 CD8_TCM L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 4.03e-01 0.0707 0.0844 0.37 CD8_TCM L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.76e-02 -0.193 0.0868 0.354 CD8_TEM L2
ENSG00000162599 NFIA 104144 sc-eQTL 8.40e-01 0.0184 0.091 0.354 CD8_TEM L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 3.58e-01 -0.0823 0.0893 0.354 CD8_TEM L2
ENSG00000132849 PATJ -773003 sc-eQTL 2.73e-02 -0.16 0.0719 0.364 MAIT L2
ENSG00000162599 NFIA 104144 sc-eQTL 3.78e-01 0.0737 0.0835 0.364 MAIT L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 7.40e-02 -0.147 0.0821 0.364 MAIT L2
ENSG00000132849 PATJ -773003 sc-eQTL 3.26e-03 -0.247 0.083 0.367 NK_CD56bright L2
ENSG00000162599 NFIA 104144 sc-eQTL 4.87e-01 0.0589 0.0845 0.367 NK_CD56bright L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 4.22e-01 -0.0692 0.0861 0.367 NK_CD56bright L2
ENSG00000132849 PATJ -773003 sc-eQTL 5.68e-01 -0.0474 0.0828 0.366 NK_CD56dim L2
ENSG00000162599 NFIA 104144 sc-eQTL 1.04e-01 -0.135 0.0829 0.366 NK_CD56dim L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.15e-01 -0.0184 0.0787 0.366 NK_CD56dim L2
ENSG00000132849 PATJ -773003 sc-eQTL 7.09e-01 -0.0298 0.0797 0.361 NK_HLA L2
ENSG00000162599 NFIA 104144 sc-eQTL 2.39e-01 -0.0996 0.0844 0.361 NK_HLA L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 3.90e-01 -0.0779 0.0904 0.361 NK_HLA L2
ENSG00000132849 PATJ -773003 sc-eQTL 7.06e-01 0.0322 0.0854 0.366 NK_cytokine L2
ENSG00000162599 NFIA 104144 sc-eQTL 2.81e-01 -0.0905 0.0836 0.366 NK_cytokine L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.36e-01 0.0173 0.0835 0.366 NK_cytokine L2
ENSG00000132849 PATJ -773003 sc-eQTL 9.78e-01 -0.00291 0.107 0.385 PB L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.23e-01 0.126 0.103 0.385 PB L2
ENSG00000132849 PATJ -773003 sc-eQTL 3.42e-01 0.0739 0.0776 0.367 Pro_T L2
ENSG00000162599 NFIA 104144 sc-eQTL 5.09e-01 -0.0521 0.0787 0.367 Pro_T L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 6.24e-01 -0.0428 0.0871 0.367 Pro_T L2
ENSG00000132849 PATJ -773003 sc-eQTL 4.23e-01 -0.0629 0.0784 0.368 Treg L2
ENSG00000162599 NFIA 104144 sc-eQTL 5.04e-01 -0.0557 0.0833 0.368 Treg L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 1.99e-01 0.111 0.0862 0.368 Treg L2
ENSG00000162599 NFIA 104144 sc-eQTL 7.21e-01 -0.0285 0.0795 0.366 cDC L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.49e-01 0.0179 0.0937 0.366 cDC L2
ENSG00000162599 NFIA 104144 sc-eQTL 3.68e-01 0.0499 0.0554 0.368 cMono_IL1B L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.58e-01 0.0109 0.0612 0.368 cMono_IL1B L2
ENSG00000162599 NFIA 104144 sc-eQTL 7.55e-01 -0.0191 0.0613 0.368 cMono_S100A L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 8.08e-01 -0.0179 0.0735 0.368 cMono_S100A L2
ENSG00000132849 PATJ -773003 sc-eQTL 5.21e-01 -0.063 0.098 0.379 gdT L2
ENSG00000162599 NFIA 104144 sc-eQTL 6.65e-01 0.0436 0.1 0.379 gdT L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 4.67e-01 0.0753 0.103 0.379 gdT L2
ENSG00000162599 NFIA 104144 sc-eQTL 5.39e-01 0.0472 0.0767 0.364 intMono L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 1.74e-01 0.115 0.0846 0.364 intMono L2
ENSG00000162599 NFIA 104144 sc-eQTL 3.18e-01 0.0864 0.0864 0.367 ncMono L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 9.25e-01 0.00832 0.0878 0.367 ncMono L2
ENSG00000162599 NFIA 104144 sc-eQTL 1.23e-01 0.126 0.0811 0.373 pDC L2
ENSG00000162604 TM2D1 -756020 sc-eQTL 6.08e-01 -0.0426 0.0829 0.373 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -773003 sc-eQTL 4.55e-01 -0.0526 0.0704 0.368 B_Memory LOneK1K
ENSG00000162604 TM2D1 -756020 sc-eQTL 9.68e-01 -0.00321 0.08 0.368 B_Memory LOneK1K
ENSG00000132849 PATJ -773003 sc-eQTL 2.30e-01 -0.0903 0.075 0.368 B_Naive LOneK1K
ENSG00000162604 TM2D1 -756020 sc-eQTL 1.14e-01 -0.113 0.0714 0.368 B_Naive LOneK1K
ENSG00000162599 NFIA 104144 sc-eQTL 6.75e-01 0.0221 0.0526 0.368 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -756020 sc-eQTL 7.65e-01 -0.0172 0.0574 0.368 CD14_Mono LOneK1K
ENSG00000162599 NFIA 104144 sc-eQTL 8.46e-02 0.125 0.0723 0.369 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -756020 sc-eQTL 2.09e-01 0.108 0.086 0.369 CD16_Mono LOneK1K
ENSG00000132849 PATJ -773003 sc-eQTL 8.23e-01 -0.0173 0.0772 0.366 NK_CD56dim LOneK1K
ENSG00000162599 NFIA 104144 sc-eQTL 1.11e-01 -0.126 0.0786 0.366 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -756020 sc-eQTL 7.37e-01 -0.0238 0.0707 0.366 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162598 C1orf87 895633 eQTL 0.0223 0.0678 0.0296 0.00119 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina