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Genes within 1Mb (chr1:60769740:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -972666 sc-eQTL 8.63e-02 -0.117 0.068 0.4 B L1
ENSG00000134709 HOOK1 954954 sc-eQTL 1.69e-01 0.112 0.081 0.4 B L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 5.05e-01 0.0455 0.0683 0.4 B L1
ENSG00000132849 PATJ -972666 sc-eQTL 3.97e-01 0.0411 0.0484 0.4 CD4T L1
ENSG00000134709 HOOK1 954954 sc-eQTL 6.96e-01 0.0205 0.0524 0.4 CD4T L1
ENSG00000162599 NFIA -95519 sc-eQTL 9.43e-01 0.00534 0.0739 0.4 CD4T L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.76e-01 0.0246 0.0589 0.4 CD4T L1
ENSG00000132849 PATJ -972666 sc-eQTL 9.63e-02 0.078 0.0467 0.4 CD8T L1
ENSG00000134709 HOOK1 954954 sc-eQTL 3.16e-01 0.0502 0.05 0.4 CD8T L1
ENSG00000162599 NFIA -95519 sc-eQTL 4.52e-01 0.0562 0.0746 0.4 CD8T L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 2.35e-01 0.0837 0.0703 0.4 CD8T L1
ENSG00000162599 NFIA -95519 sc-eQTL 7.59e-01 -0.0228 0.0743 0.405 DC L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.52e-01 -0.0349 0.0772 0.405 DC L1
ENSG00000162599 NFIA -95519 sc-eQTL 5.17e-01 0.0347 0.0535 0.4 Mono L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 4.77e-02 -0.118 0.0591 0.4 Mono L1
ENSG00000132849 PATJ -972666 sc-eQTL 2.74e-01 0.0763 0.0695 0.401 NK L1
ENSG00000162599 NFIA -95519 sc-eQTL 8.20e-01 0.0184 0.081 0.401 NK L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.65e-01 0.0214 0.0713 0.401 NK L1
ENSG00000132849 PATJ -972666 sc-eQTL 1.24e-01 0.0987 0.0639 0.4 Other_T L1
ENSG00000134709 HOOK1 954954 sc-eQTL 7.50e-01 0.0252 0.0789 0.4 Other_T L1
ENSG00000162599 NFIA -95519 sc-eQTL 3.37e-01 0.0806 0.0839 0.4 Other_T L1
ENSG00000162604 TM2D1 -955683 sc-eQTL 5.74e-01 0.0424 0.0753 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -972666 sc-eQTL 1.59e-01 0.113 0.08 0.395 B_Activated L2
ENSG00000134709 HOOK1 954954 sc-eQTL 3.95e-01 -0.0653 0.0765 0.395 B_Activated L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 3.76e-01 0.0904 0.102 0.395 B_Activated L2
ENSG00000132849 PATJ -972666 sc-eQTL 5.95e-01 -0.0434 0.0813 0.399 B_Intermediate L2
ENSG00000134709 HOOK1 954954 sc-eQTL 9.50e-01 0.00573 0.0911 0.399 B_Intermediate L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.26e-01 -0.03 0.0854 0.399 B_Intermediate L2
ENSG00000132849 PATJ -972666 sc-eQTL 1.11e-01 -0.129 0.0805 0.399 B_Memory L2
ENSG00000134709 HOOK1 954954 sc-eQTL 8.16e-01 0.0187 0.0805 0.399 B_Memory L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.47e-01 0.0417 0.091 0.399 B_Memory L2
ENSG00000132849 PATJ -972666 sc-eQTL 4.83e-01 -0.0619 0.088 0.4 B_Naive1 L2
ENSG00000134709 HOOK1 954954 sc-eQTL 9.16e-02 0.15 0.0883 0.4 B_Naive1 L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 4.58e-01 0.0602 0.0809 0.4 B_Naive1 L2
ENSG00000132849 PATJ -972666 sc-eQTL 3.25e-01 -0.0871 0.0883 0.399 B_Naive2 L2
ENSG00000134709 HOOK1 954954 sc-eQTL 2.66e-01 -0.0982 0.0881 0.399 B_Naive2 L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 9.39e-01 0.00691 0.0896 0.399 B_Naive2 L2
ENSG00000132849 PATJ -972666 sc-eQTL 1.98e-01 0.0918 0.0712 0.393 CD4_CTL L2
ENSG00000134709 HOOK1 954954 sc-eQTL 8.14e-01 -0.019 0.0808 0.393 CD4_CTL L2
ENSG00000162599 NFIA -95519 sc-eQTL 7.41e-01 -0.0287 0.0869 0.393 CD4_CTL L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 3.40e-01 0.0871 0.0911 0.393 CD4_CTL L2
ENSG00000132849 PATJ -972666 sc-eQTL 6.63e-01 0.0216 0.0495 0.4 CD4_Naive L2
ENSG00000134709 HOOK1 954954 sc-eQTL 6.61e-01 0.0278 0.0633 0.4 CD4_Naive L2
ENSG00000162599 NFIA -95519 sc-eQTL 7.28e-01 -0.0271 0.0778 0.4 CD4_Naive L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 3.04e-01 -0.0733 0.0711 0.4 CD4_Naive L2
ENSG00000132849 PATJ -972666 sc-eQTL 9.43e-01 -0.00441 0.0615 0.4 CD4_TCM L2
ENSG00000134709 HOOK1 954954 sc-eQTL 5.09e-01 0.0458 0.0692 0.4 CD4_TCM L2
ENSG00000162599 NFIA -95519 sc-eQTL 1.66e-01 -0.114 0.0823 0.4 CD4_TCM L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.41e-01 0.0334 0.0717 0.4 CD4_TCM L2
ENSG00000132849 PATJ -972666 sc-eQTL 7.56e-01 0.0248 0.0797 0.4 CD4_TEM L2
ENSG00000134709 HOOK1 954954 sc-eQTL 4.14e-01 -0.0749 0.0915 0.4 CD4_TEM L2
ENSG00000162599 NFIA -95519 sc-eQTL 3.43e-01 0.0841 0.0886 0.4 CD4_TEM L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 1.16e-02 0.21 0.0826 0.4 CD4_TEM L2
ENSG00000132849 PATJ -972666 sc-eQTL 7.43e-01 0.0278 0.0845 0.4 CD8_CTL L2
ENSG00000134709 HOOK1 954954 sc-eQTL 8.35e-01 -0.0169 0.0811 0.4 CD8_CTL L2
ENSG00000162599 NFIA -95519 sc-eQTL 4.18e-01 0.0723 0.0892 0.4 CD8_CTL L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.78e-01 0.0323 0.0775 0.4 CD8_CTL L2
ENSG00000132849 PATJ -972666 sc-eQTL 1.73e-01 0.0901 0.0659 0.4 CD8_Naive L2
ENSG00000134709 HOOK1 954954 sc-eQTL 2.23e-01 0.0935 0.0765 0.4 CD8_Naive L2
ENSG00000162599 NFIA -95519 sc-eQTL 8.18e-01 -0.0199 0.0864 0.4 CD8_Naive L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 5.95e-01 0.043 0.0809 0.4 CD8_Naive L2
ENSG00000132849 PATJ -972666 sc-eQTL 2.05e-01 0.109 0.0856 0.41 CD8_TCM L2
ENSG00000134709 HOOK1 954954 sc-eQTL 2.18e-01 0.107 0.0868 0.41 CD8_TCM L2
ENSG00000162599 NFIA -95519 sc-eQTL 7.78e-01 -0.0262 0.0926 0.41 CD8_TCM L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.68e-01 0.0376 0.0874 0.41 CD8_TCM L2
ENSG00000132849 PATJ -972666 sc-eQTL 6.34e-01 -0.0428 0.0899 0.395 CD8_TEM L2
ENSG00000134709 HOOK1 954954 sc-eQTL 7.12e-01 0.0299 0.081 0.395 CD8_TEM L2
ENSG00000162599 NFIA -95519 sc-eQTL 2.63e-01 0.104 0.0928 0.395 CD8_TEM L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 8.55e-01 0.0168 0.0915 0.395 CD8_TEM L2
ENSG00000132849 PATJ -972666 sc-eQTL 7.73e-01 0.0217 0.0753 0.398 MAIT L2
ENSG00000134709 HOOK1 954954 sc-eQTL 4.06e-01 0.0706 0.0849 0.398 MAIT L2
ENSG00000162599 NFIA -95519 sc-eQTL 2.72e-01 0.0951 0.0864 0.398 MAIT L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.24e-01 0.0302 0.0856 0.398 MAIT L2
ENSG00000132849 PATJ -972666 sc-eQTL 3.01e-01 -0.0917 0.0885 0.393 NK_CD56bright L2
ENSG00000162599 NFIA -95519 sc-eQTL 2.96e-01 0.0926 0.0883 0.393 NK_CD56bright L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.47e-01 -0.0291 0.0903 0.393 NK_CD56bright L2
ENSG00000132849 PATJ -972666 sc-eQTL 4.46e-01 0.0659 0.0863 0.399 NK_CD56dim L2
ENSG00000162599 NFIA -95519 sc-eQTL 5.16e-01 0.0565 0.0869 0.399 NK_CD56dim L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 2.90e-01 0.0868 0.0818 0.399 NK_CD56dim L2
ENSG00000132849 PATJ -972666 sc-eQTL 8.01e-01 0.0216 0.0855 0.4 NK_HLA L2
ENSG00000162599 NFIA -95519 sc-eQTL 3.02e-01 0.0939 0.0906 0.4 NK_HLA L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 8.04e-01 0.0241 0.0972 0.4 NK_HLA L2
ENSG00000132849 PATJ -972666 sc-eQTL 3.87e-01 0.0764 0.0881 0.399 NK_cytokine L2
ENSG00000162599 NFIA -95519 sc-eQTL 1.75e-01 -0.117 0.0863 0.399 NK_cytokine L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 9.38e-01 -0.00671 0.0863 0.399 NK_cytokine L2
ENSG00000132849 PATJ -972666 sc-eQTL 1.69e-01 -0.154 0.111 0.385 PB L2
ENSG00000134709 HOOK1 954954 sc-eQTL 7.87e-01 -0.0286 0.105 0.385 PB L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.94e-01 0.0284 0.109 0.385 PB L2
ENSG00000132849 PATJ -972666 sc-eQTL 2.57e-01 0.0954 0.0839 0.393 Pro_T L2
ENSG00000134709 HOOK1 954954 sc-eQTL 3.14e-01 -0.0802 0.0795 0.393 Pro_T L2
ENSG00000162599 NFIA -95519 sc-eQTL 4.04e-01 0.0713 0.0852 0.393 Pro_T L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 1.15e-01 0.148 0.0937 0.393 Pro_T L2
ENSG00000132849 PATJ -972666 sc-eQTL 5.41e-01 0.0496 0.081 0.4 Treg L2
ENSG00000134709 HOOK1 954954 sc-eQTL 4.81e-01 -0.0542 0.0768 0.4 Treg L2
ENSG00000162599 NFIA -95519 sc-eQTL 8.39e-01 0.0175 0.0861 0.4 Treg L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 9.15e-01 0.00958 0.0894 0.4 Treg L2
ENSG00000162599 NFIA -95519 sc-eQTL 7.44e-01 0.026 0.0797 0.407 cDC L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.49e-01 -0.0428 0.0938 0.407 cDC L2
ENSG00000162599 NFIA -95519 sc-eQTL 9.27e-01 -0.00523 0.0571 0.4 cMono_IL1B L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 2.50e-01 -0.0725 0.0628 0.4 cMono_IL1B L2
ENSG00000162599 NFIA -95519 sc-eQTL 9.10e-01 -0.00718 0.0636 0.4 cMono_S100A L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 5.09e-01 -0.0504 0.0761 0.4 cMono_S100A L2
ENSG00000132849 PATJ -972666 sc-eQTL 8.94e-01 0.0134 0.101 0.397 gdT L2
ENSG00000134709 HOOK1 954954 sc-eQTL 7.56e-01 -0.0298 0.0956 0.397 gdT L2
ENSG00000162599 NFIA -95519 sc-eQTL 2.10e-01 -0.129 0.102 0.397 gdT L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 2.24e-01 -0.129 0.105 0.397 gdT L2
ENSG00000162599 NFIA -95519 sc-eQTL 1.13e-01 0.129 0.081 0.407 intMono L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.59e-02 0.165 0.0894 0.407 intMono L2
ENSG00000162599 NFIA -95519 sc-eQTL 9.16e-01 -0.00938 0.0887 0.4 ncMono L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 1.01e-01 -0.147 0.0893 0.4 ncMono L2
ENSG00000162599 NFIA -95519 sc-eQTL 7.10e-02 -0.153 0.0841 0.41 pDC L2
ENSG00000162604 TM2D1 -955683 sc-eQTL 9.25e-01 0.0081 0.0862 0.41 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132849 PATJ -972666 sc-eQTL 3.59e-01 -0.067 0.073 0.4 B_Memory LOneK1K
ENSG00000134709 HOOK1 954954 sc-eQTL 8.16e-01 -0.0186 0.0796 0.4 B_Memory LOneK1K
ENSG00000162604 TM2D1 -955683 sc-eQTL 8.97e-01 -0.0108 0.083 0.4 B_Memory LOneK1K
ENSG00000132849 PATJ -972666 sc-eQTL 9.63e-02 -0.131 0.0784 0.4 B_Naive LOneK1K
ENSG00000134709 HOOK1 954954 sc-eQTL 2.42e-01 0.0999 0.0852 0.4 B_Naive LOneK1K
ENSG00000162604 TM2D1 -955683 sc-eQTL 5.01e-01 0.0507 0.0752 0.4 B_Naive LOneK1K
ENSG00000162599 NFIA -95519 sc-eQTL 9.65e-01 0.00239 0.0542 0.4 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -955683 sc-eQTL 6.80e-02 -0.108 0.0587 0.4 CD14_Mono LOneK1K
ENSG00000162599 NFIA -95519 sc-eQTL 5.59e-01 0.0446 0.0762 0.401 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -955683 sc-eQTL 8.75e-01 -0.0143 0.0903 0.401 CD16_Mono LOneK1K
ENSG00000132849 PATJ -972666 sc-eQTL 2.19e-01 0.0993 0.0806 0.399 NK_CD56dim LOneK1K
ENSG00000162599 NFIA -95519 sc-eQTL 9.52e-01 -0.00495 0.0828 0.399 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -955683 sc-eQTL 7.93e-01 0.0195 0.0741 0.399 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134716 CYP2J2 842967 eQTL 2.45e-02 -0.0693 0.0308 0.0015 0.0 0.421
ENSG00000162599 NFIA -95519 eQTL 0.0439 -0.0421 0.0208 0.0 0.0 0.421

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134716 CYP2J2 842967 2.67e-07 1.3e-07 4.91e-08 1.81e-07 9.79e-08 9.76e-08 1.61e-07 5.48e-08 1.45e-07 5.42e-08 1.52e-07 9.19e-08 1.52e-07 6.76e-08 5.91e-08 7.49e-08 4.17e-08 1.33e-07 5.97e-08 4.23e-08 1.21e-07 1.24e-07 1.45e-07 2.93e-08 1.55e-07 1.25e-07 1.07e-07 9.74e-08 1.2e-07 1.07e-07 1.02e-07 3.66e-08 3.66e-08 8e-08 7.02e-08 3.49e-08 4.99e-08 9.36e-08 6.37e-08 3.8e-08 5.37e-08 1.46e-07 5.27e-08 1.3e-08 4.25e-08 1.84e-08 1.22e-07 3.81e-09 4.88e-08