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Genes within 1Mb (chr1:60735355:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 920569 sc-eQTL 3.81e-01 0.0728 0.0828 0.38 B L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 9.50e-01 -0.00441 0.0697 0.38 B L1
ENSG00000134709 HOOK1 920569 sc-eQTL 3.94e-01 0.0458 0.0537 0.38 CD4T L1
ENSG00000162599 NFIA -129904 sc-eQTL 5.55e-01 0.0448 0.0759 0.38 CD4T L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 4.20e-01 -0.0488 0.0604 0.38 CD4T L1
ENSG00000134709 HOOK1 920569 sc-eQTL 9.17e-01 0.00526 0.0504 0.38 CD8T L1
ENSG00000162599 NFIA -129904 sc-eQTL 4.69e-01 0.0544 0.075 0.38 CD8T L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 9.93e-01 -0.000631 0.0709 0.38 CD8T L1
ENSG00000162599 NFIA -129904 sc-eQTL 3.28e-01 0.0741 0.0756 0.385 DC L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.76e-01 -0.0225 0.0788 0.385 DC L1
ENSG00000162599 NFIA -129904 sc-eQTL 6.65e-01 0.024 0.0554 0.38 Mono L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 9.62e-02 -0.102 0.0613 0.38 Mono L1
ENSG00000162599 NFIA -129904 sc-eQTL 8.87e-01 0.0118 0.0825 0.38 NK L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 4.70e-01 0.0525 0.0726 0.38 NK L1
ENSG00000134709 HOOK1 920569 sc-eQTL 6.68e-01 0.0338 0.0787 0.38 Other_T L1
ENSG00000162599 NFIA -129904 sc-eQTL 5.41e-01 0.0514 0.0838 0.38 Other_T L1
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.77e-01 0.0213 0.0752 0.38 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 920569 sc-eQTL 6.64e-01 -0.0356 0.0819 0.401 B_Activated L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.11e-01 -0.111 0.109 0.401 B_Activated L2
ENSG00000134709 HOOK1 920569 sc-eQTL 3.40e-01 -0.0897 0.0938 0.382 B_Intermediate L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 6.67e-01 -0.038 0.0881 0.382 B_Intermediate L2
ENSG00000134709 HOOK1 920569 sc-eQTL 5.09e-01 0.0547 0.0827 0.379 B_Memory L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 5.25e-01 -0.0596 0.0936 0.379 B_Memory L2
ENSG00000134709 HOOK1 920569 sc-eQTL 3.05e-01 0.0934 0.0909 0.38 B_Naive1 L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 6.97e-01 0.0323 0.083 0.38 B_Naive1 L2
ENSG00000134709 HOOK1 920569 sc-eQTL 6.32e-01 0.0431 0.0898 0.38 B_Naive2 L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.99e-01 0.0947 0.0909 0.38 B_Naive2 L2
ENSG00000134709 HOOK1 920569 sc-eQTL 6.74e-01 -0.0347 0.0825 0.377 CD4_CTL L2
ENSG00000162599 NFIA -129904 sc-eQTL 7.93e-01 -0.0233 0.0888 0.377 CD4_CTL L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.76e-01 0.0827 0.0932 0.377 CD4_CTL L2
ENSG00000134709 HOOK1 920569 sc-eQTL 1.82e-01 0.0858 0.064 0.38 CD4_Naive L2
ENSG00000162599 NFIA -129904 sc-eQTL 3.31e-01 0.0768 0.0789 0.38 CD4_Naive L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.40e-01 -0.085 0.0722 0.38 CD4_Naive L2
ENSG00000134709 HOOK1 920569 sc-eQTL 6.28e-01 0.0345 0.0711 0.38 CD4_TCM L2
ENSG00000162599 NFIA -129904 sc-eQTL 8.64e-01 0.0145 0.0849 0.38 CD4_TCM L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 5.92e-01 -0.0395 0.0736 0.38 CD4_TCM L2
ENSG00000134709 HOOK1 920569 sc-eQTL 5.01e-01 -0.0633 0.0939 0.38 CD4_TEM L2
ENSG00000162599 NFIA -129904 sc-eQTL 4.95e-01 0.0621 0.0909 0.38 CD4_TEM L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 4.75e-01 0.0615 0.0859 0.38 CD4_TEM L2
ENSG00000134709 HOOK1 920569 sc-eQTL 5.79e-01 0.0451 0.0813 0.38 CD8_CTL L2
ENSG00000162599 NFIA -129904 sc-eQTL 8.93e-01 0.0121 0.0896 0.38 CD8_CTL L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.56e-01 0.0243 0.0778 0.38 CD8_CTL L2
ENSG00000134709 HOOK1 920569 sc-eQTL 7.53e-01 0.0244 0.0776 0.38 CD8_Naive L2
ENSG00000162599 NFIA -129904 sc-eQTL 1.69e-01 0.12 0.087 0.38 CD8_Naive L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.81e-01 -0.0882 0.0816 0.38 CD8_Naive L2
ENSG00000134709 HOOK1 920569 sc-eQTL 4.47e-01 0.068 0.0893 0.389 CD8_TCM L2
ENSG00000162599 NFIA -129904 sc-eQTL 5.71e-01 -0.0539 0.0949 0.389 CD8_TCM L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 1.73e-01 0.122 0.0893 0.389 CD8_TCM L2
ENSG00000134709 HOOK1 920569 sc-eQTL 3.21e-01 -0.0823 0.0827 0.381 CD8_TEM L2
ENSG00000162599 NFIA -129904 sc-eQTL 2.36e-01 0.113 0.0949 0.381 CD8_TEM L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.23e-01 -0.0926 0.0935 0.381 CD8_TEM L2
ENSG00000134709 HOOK1 920569 sc-eQTL 4.29e-01 0.0681 0.0859 0.379 MAIT L2
ENSG00000162599 NFIA -129904 sc-eQTL 8.35e-01 0.0182 0.0877 0.379 MAIT L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 9.06e-01 0.0103 0.0867 0.379 MAIT L2
ENSG00000162599 NFIA -129904 sc-eQTL 6.25e-01 0.0447 0.0913 0.371 NK_CD56bright L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 1.28e-01 0.141 0.0926 0.371 NK_CD56bright L2
ENSG00000162599 NFIA -129904 sc-eQTL 8.29e-01 0.0196 0.0905 0.377 NK_CD56dim L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 8.59e-01 0.0152 0.0854 0.377 NK_CD56dim L2
ENSG00000162599 NFIA -129904 sc-eQTL 2.74e-01 0.0998 0.0911 0.372 NK_HLA L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 4.94e-01 -0.0669 0.0976 0.372 NK_HLA L2
ENSG00000162599 NFIA -129904 sc-eQTL 7.01e-01 -0.034 0.0883 0.377 NK_cytokine L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 4.12e-01 0.0723 0.0879 0.377 NK_cytokine L2
ENSG00000134709 HOOK1 920569 sc-eQTL 2.63e-01 -0.117 0.104 0.385 PB L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.28e-01 -0.0376 0.108 0.385 PB L2
ENSG00000134709 HOOK1 920569 sc-eQTL 4.10e-01 0.065 0.0787 0.372 Pro_T L2
ENSG00000162599 NFIA -129904 sc-eQTL 1.23e-01 0.13 0.0838 0.372 Pro_T L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.41e-01 0.0889 0.093 0.372 Pro_T L2
ENSG00000134709 HOOK1 920569 sc-eQTL 8.72e-01 0.0126 0.0781 0.38 Treg L2
ENSG00000162599 NFIA -129904 sc-eQTL 5.11e-01 -0.0576 0.0875 0.38 Treg L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.57e-01 0.0281 0.0908 0.38 Treg L2
ENSG00000162599 NFIA -129904 sc-eQTL 1.92e-01 0.105 0.0799 0.39 cDC L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.79e-01 0.102 0.0943 0.39 cDC L2
ENSG00000162599 NFIA -129904 sc-eQTL 6.67e-01 0.0252 0.0584 0.38 cMono_IL1B L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 1.15e-01 -0.101 0.0641 0.38 cMono_IL1B L2
ENSG00000162599 NFIA -129904 sc-eQTL 6.81e-01 -0.0269 0.0652 0.38 cMono_S100A L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 1.67e-01 -0.108 0.0778 0.38 cMono_S100A L2
ENSG00000134709 HOOK1 920569 sc-eQTL 8.62e-01 -0.0171 0.0981 0.367 gdT L2
ENSG00000162599 NFIA -129904 sc-eQTL 5.86e-01 -0.0577 0.106 0.367 gdT L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.93e-01 -0.093 0.108 0.367 gdT L2
ENSG00000162599 NFIA -129904 sc-eQTL 4.38e-02 0.163 0.0805 0.378 intMono L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.92e-01 0.0771 0.0898 0.378 intMono L2
ENSG00000162599 NFIA -129904 sc-eQTL 7.96e-01 0.024 0.0929 0.376 ncMono L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 3.93e-01 -0.0806 0.094 0.376 ncMono L2
ENSG00000162599 NFIA -129904 sc-eQTL 4.11e-01 -0.0715 0.0867 0.384 pDC L2
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.79e-01 -0.0955 0.0879 0.384 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 920569 sc-eQTL 5.51e-01 -0.049 0.082 0.38 B_Memory LOneK1K
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.61e-01 -0.0963 0.0854 0.38 B_Memory LOneK1K
ENSG00000134709 HOOK1 920569 sc-eQTL 2.27e-01 0.108 0.089 0.38 B_Naive LOneK1K
ENSG00000162604 TM2D1 -990068 sc-eQTL 2.47e-01 0.0911 0.0784 0.38 B_Naive LOneK1K
ENSG00000162599 NFIA -129904 sc-eQTL 9.41e-01 0.00415 0.0559 0.38 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -990068 sc-eQTL 7.87e-02 -0.107 0.0605 0.38 CD14_Mono LOneK1K
ENSG00000162599 NFIA -129904 sc-eQTL 3.25e-01 0.0763 0.0774 0.379 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -990068 sc-eQTL 8.93e-01 -0.0124 0.092 0.379 CD16_Mono LOneK1K
ENSG00000162599 NFIA -129904 sc-eQTL 7.08e-01 -0.0317 0.0843 0.377 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -990068 sc-eQTL 8.87e-01 0.0107 0.0755 0.377 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA -129904 eQTL 0.0266 -0.0502 0.0226 0.00101 0.0 0.335

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162599 NFIA -129904 4.7e-06 5.27e-06 6.36e-07 3.6e-06 1.75e-06 1.54e-06 6.35e-06 1.15e-06 4.98e-06 2.78e-06 6.53e-06 3.17e-06 8.17e-06 1.89e-06 1.04e-06 4.02e-06 2.16e-06 3.98e-06 1.47e-06 1.4e-06 2.75e-06 5.26e-06 4.73e-06 1.76e-06 8.46e-06 2.21e-06 2.3e-06 1.74e-06 4.98e-06 5.28e-06 2.62e-06 4.15e-07 7.6e-07 2.2e-06 1.9e-06 1.18e-06 1.08e-06 5.43e-07 9.04e-07 6.99e-07 7.78e-07 6.32e-06 6.81e-07 1.59e-07 7.57e-07 1.12e-06 1.15e-06 7.43e-07 5.44e-07