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Genes within 1Mb (chr1:60727930:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 913144 sc-eQTL 2.66e-01 -0.0937 0.084 0.25 B L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.04e-01 -0.0368 0.0708 0.25 B L1
ENSG00000134709 HOOK1 913144 sc-eQTL 8.19e-01 0.0126 0.0551 0.25 CD4T L1
ENSG00000162599 NFIA -137329 sc-eQTL 6.24e-01 0.0381 0.0777 0.25 CD4T L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 4.72e-01 0.0446 0.0619 0.25 CD4T L1
ENSG00000134709 HOOK1 913144 sc-eQTL 9.69e-01 -0.00205 0.0526 0.25 CD8T L1
ENSG00000162599 NFIA -137329 sc-eQTL 7.76e-01 -0.0223 0.0784 0.25 CD8T L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.67e-01 -0.022 0.074 0.25 CD8T L1
ENSG00000162599 NFIA -137329 sc-eQTL 3.12e-01 0.079 0.078 0.248 DC L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 9.23e-01 -0.00786 0.0813 0.248 DC L1
ENSG00000162599 NFIA -137329 sc-eQTL 9.51e-01 -0.00341 0.0558 0.25 Mono L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 1.02e-01 0.101 0.0617 0.25 Mono L1
ENSG00000162599 NFIA -137329 sc-eQTL 8.64e-01 -0.0142 0.0831 0.251 NK L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 5.80e-01 -0.0405 0.0731 0.251 NK L1
ENSG00000134709 HOOK1 913144 sc-eQTL 5.68e-01 -0.0468 0.0819 0.25 Other_T L1
ENSG00000162599 NFIA -137329 sc-eQTL 6.96e-01 -0.0342 0.0873 0.25 Other_T L1
ENSG00000162604 TM2D1 -997493 sc-eQTL 8.99e-01 -0.0099 0.0783 0.25 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 913144 sc-eQTL 5.30e-01 0.0515 0.0819 0.235 B_Activated L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 3.71e-01 -0.0978 0.109 0.235 B_Activated L2
ENSG00000134709 HOOK1 913144 sc-eQTL 9.73e-01 -0.00322 0.0955 0.251 B_Intermediate L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 9.82e-01 -0.00206 0.0895 0.251 B_Intermediate L2
ENSG00000134709 HOOK1 913144 sc-eQTL 2.97e-01 -0.0868 0.0829 0.252 B_Memory L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 2.81e-01 0.101 0.0939 0.252 B_Memory L2
ENSG00000134709 HOOK1 913144 sc-eQTL 4.67e-01 -0.067 0.092 0.25 B_Naive1 L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 5.36e-01 -0.0521 0.0839 0.25 B_Naive1 L2
ENSG00000134709 HOOK1 913144 sc-eQTL 7.59e-01 0.028 0.0912 0.251 B_Naive2 L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.73e-01 -0.0391 0.0925 0.251 B_Naive2 L2
ENSG00000134709 HOOK1 913144 sc-eQTL 9.35e-01 -0.00681 0.0829 0.25 CD4_CTL L2
ENSG00000162599 NFIA -137329 sc-eQTL 4.75e-01 0.0637 0.089 0.25 CD4_CTL L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 1.37e-01 -0.139 0.0932 0.25 CD4_CTL L2
ENSG00000134709 HOOK1 913144 sc-eQTL 7.45e-01 -0.0216 0.0664 0.25 CD4_Naive L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.59e-01 -0.00423 0.0816 0.25 CD4_Naive L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 1.73e-01 0.102 0.0744 0.25 CD4_Naive L2
ENSG00000134709 HOOK1 913144 sc-eQTL 3.13e-01 -0.0732 0.0724 0.25 CD4_TCM L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.05e-02 0.146 0.0859 0.25 CD4_TCM L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.67e-01 -0.0223 0.0751 0.25 CD4_TCM L2
ENSG00000134709 HOOK1 913144 sc-eQTL 1.34e-01 0.145 0.096 0.25 CD4_TEM L2
ENSG00000162599 NFIA -137329 sc-eQTL 2.21e-01 -0.114 0.0932 0.25 CD4_TEM L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.45e-03 -0.235 0.0869 0.25 CD4_TEM L2
ENSG00000134709 HOOK1 913144 sc-eQTL 7.71e-01 -0.0249 0.0855 0.25 CD8_CTL L2
ENSG00000162599 NFIA -137329 sc-eQTL 6.31e-01 -0.0453 0.0942 0.25 CD8_CTL L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 9.66e-01 0.00344 0.0818 0.25 CD8_CTL L2
ENSG00000134709 HOOK1 913144 sc-eQTL 8.99e-01 -0.0102 0.0803 0.25 CD8_Naive L2
ENSG00000162599 NFIA -137329 sc-eQTL 3.41e-01 0.086 0.0902 0.25 CD8_Naive L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 4.84e-01 0.0593 0.0845 0.25 CD8_Naive L2
ENSG00000134709 HOOK1 913144 sc-eQTL 7.05e-01 -0.0343 0.0904 0.243 CD8_TCM L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.92e-01 0.000922 0.0961 0.243 CD8_TCM L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 5.35e-01 -0.0564 0.0907 0.243 CD8_TCM L2
ENSG00000134709 HOOK1 913144 sc-eQTL 7.49e-01 0.0271 0.0846 0.256 CD8_TEM L2
ENSG00000162599 NFIA -137329 sc-eQTL 4.45e-01 -0.0743 0.097 0.256 CD8_TEM L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 4.25e-01 0.0763 0.0954 0.256 CD8_TEM L2
ENSG00000134709 HOOK1 913144 sc-eQTL 6.62e-01 0.0388 0.0885 0.249 MAIT L2
ENSG00000162599 NFIA -137329 sc-eQTL 6.76e-01 -0.0377 0.0902 0.249 MAIT L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.90e-01 -0.0356 0.0892 0.249 MAIT L2
ENSG00000162599 NFIA -137329 sc-eQTL 4.58e-01 -0.0675 0.0909 0.26 NK_CD56bright L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.64e-01 -0.0279 0.0928 0.26 NK_CD56bright L2
ENSG00000162599 NFIA -137329 sc-eQTL 7.19e-01 -0.0322 0.0892 0.252 NK_CD56dim L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 9.26e-01 -0.00778 0.0842 0.252 NK_CD56dim L2
ENSG00000162599 NFIA -137329 sc-eQTL 7.26e-01 0.0336 0.0959 0.256 NK_HLA L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.69e-01 -0.0439 0.103 0.256 NK_HLA L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.85e-01 0.00172 0.0893 0.252 NK_cytokine L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.84e-01 -0.0245 0.089 0.252 NK_cytokine L2
ENSG00000134709 HOOK1 913144 sc-eQTL 8.67e-01 0.0197 0.118 0.252 PB L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 5.30e-01 -0.0762 0.121 0.252 PB L2
ENSG00000134709 HOOK1 913144 sc-eQTL 3.56e-01 -0.0736 0.0795 0.254 Pro_T L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.26e-02 -0.143 0.0847 0.254 Pro_T L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.30e-01 -0.0325 0.0942 0.254 Pro_T L2
ENSG00000134709 HOOK1 913144 sc-eQTL 8.62e-01 -0.0139 0.0801 0.25 Treg L2
ENSG00000162599 NFIA -137329 sc-eQTL 7.00e-01 0.0346 0.0897 0.25 Treg L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.66e-01 0.0403 0.0931 0.25 Treg L2
ENSG00000162599 NFIA -137329 sc-eQTL 8.53e-01 0.0159 0.086 0.246 cDC L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 8.12e-01 -0.0241 0.101 0.246 cDC L2
ENSG00000162599 NFIA -137329 sc-eQTL 9.86e-01 -0.00102 0.0598 0.25 cMono_IL1B L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 1.03e-01 0.107 0.0656 0.25 cMono_IL1B L2
ENSG00000162599 NFIA -137329 sc-eQTL 8.73e-01 0.0106 0.0662 0.25 cMono_S100A L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.13e-01 0.0292 0.0793 0.25 cMono_S100A L2
ENSG00000134709 HOOK1 913144 sc-eQTL 3.56e-01 -0.0914 0.0986 0.27 gdT L2
ENSG00000162599 NFIA -137329 sc-eQTL 5.69e-01 0.0607 0.106 0.27 gdT L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 8.78e-02 0.186 0.108 0.27 gdT L2
ENSG00000162599 NFIA -137329 sc-eQTL 2.45e-01 -0.0978 0.0839 0.256 intMono L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 5.65e-01 -0.0537 0.0931 0.256 intMono L2
ENSG00000162599 NFIA -137329 sc-eQTL 4.59e-01 -0.069 0.093 0.256 ncMono L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.48e-03 0.251 0.0928 0.256 ncMono L2
ENSG00000162599 NFIA -137329 sc-eQTL 2.17e-01 0.113 0.0909 0.237 pDC L2
ENSG00000162604 TM2D1 -997493 sc-eQTL 4.66e-01 0.0676 0.0926 0.237 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 913144 sc-eQTL 9.89e-01 -0.00115 0.0831 0.25 B_Memory LOneK1K
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.40e-01 0.0406 0.0867 0.25 B_Memory LOneK1K
ENSG00000134709 HOOK1 913144 sc-eQTL 4.78e-01 -0.0633 0.0891 0.25 B_Naive LOneK1K
ENSG00000162604 TM2D1 -997493 sc-eQTL 3.88e-01 -0.0678 0.0784 0.25 B_Naive LOneK1K
ENSG00000162599 NFIA -137329 sc-eQTL 8.24e-01 0.0126 0.0564 0.25 CD14_Mono LOneK1K
ENSG00000162604 TM2D1 -997493 sc-eQTL 2.78e-01 0.0668 0.0614 0.25 CD14_Mono LOneK1K
ENSG00000162599 NFIA -137329 sc-eQTL 5.34e-01 -0.0498 0.0799 0.252 CD16_Mono LOneK1K
ENSG00000162604 TM2D1 -997493 sc-eQTL 6.88e-02 0.172 0.094 0.252 CD16_Mono LOneK1K
ENSG00000162599 NFIA -137329 sc-eQTL 8.60e-01 0.015 0.0847 0.252 NK_CD56dim LOneK1K
ENSG00000162604 TM2D1 -997493 sc-eQTL 7.05e-01 -0.0287 0.0758 0.252 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162599 NFIA -137329 eQTL 0.00825 0.0622 0.0235 0.00212 0.0 0.266

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162599 NFIA -137329 4.26e-06 4.87e-06 8.72e-07 3.02e-06 1.21e-06 1.35e-06 4.21e-06 1.03e-06 4.92e-06 2.13e-06 5.26e-06 3.54e-06 7.09e-06 2.33e-06 1.43e-06 3.05e-06 2.06e-06 3.23e-06 1.45e-06 1e-06 2.63e-06 4.56e-06 3.78e-06 1.42e-06 6.16e-06 1.32e-06 2.56e-06 1.65e-06 4.23e-06 4.3e-06 2.75e-06 4.2e-07 5.29e-07 1.54e-06 2.18e-06 1.06e-06 1.02e-06 4.24e-07 9.24e-07 4.55e-07 6.39e-07 5.7e-06 3.99e-07 1.59e-07 4.86e-07 6.03e-07 8.08e-07 4.27e-07 3.73e-07
ENSG00000162604 \N -997493 2.74e-07 1.25e-07 3.72e-08 1.82e-07 8.83e-08 9.61e-08 1.49e-07 5.19e-08 1.45e-07 4.74e-08 1.62e-07 8.55e-08 1.47e-07 6.56e-08 6e-08 7.37e-08 3.98e-08 1.21e-07 5.21e-08 4.42e-08 1.05e-07 1.27e-07 1.34e-07 3.68e-08 1.4e-07 1.16e-07 1.08e-07 9.36e-08 1.08e-07 1.07e-07 9.7e-08 3.7e-08 3.3e-08 8.55e-08 8.38e-08 3.93e-08 5.02e-08 9.22e-08 6.54e-08 3.77e-08 5.13e-08 1.35e-07 4.33e-08 2.48e-08 5.7e-08 1.83e-08 1.24e-07 3.95e-09 4.73e-08