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Genes within 1Mb (chr1:60199013:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 384227 sc-eQTL 7.37e-01 0.0302 0.0896 0.25 B L1
ENSG00000172456 FGGY 902375 sc-eQTL 8.75e-01 0.0154 0.0978 0.25 B L1
ENSG00000134709 HOOK1 384227 sc-eQTL 1.01e-01 0.0979 0.0594 0.25 CD4T L1
ENSG00000162599 NFIA -666246 sc-eQTL 1.95e-01 -0.109 0.084 0.25 CD4T L1
ENSG00000172456 FGGY 902375 sc-eQTL 3.30e-01 0.0995 0.102 0.25 CD4T L1
ENSG00000134709 HOOK1 384227 sc-eQTL 1.24e-01 0.0879 0.0569 0.25 CD8T L1
ENSG00000162599 NFIA -666246 sc-eQTL 2.23e-01 -0.104 0.085 0.25 CD8T L1
ENSG00000172456 FGGY 902375 sc-eQTL 4.33e-01 0.0807 0.103 0.25 CD8T L1
ENSG00000162599 NFIA -666246 sc-eQTL 5.22e-01 -0.0546 0.0851 0.252 DC L1
ENSG00000172456 FGGY 902375 sc-eQTL 3.67e-01 0.0853 0.0943 0.252 DC L1
ENSG00000162599 NFIA -666246 sc-eQTL 3.39e-01 0.058 0.0604 0.25 Mono L1
ENSG00000172456 FGGY 902375 sc-eQTL 2.15e-01 0.128 0.103 0.25 Mono L1
ENSG00000162599 NFIA -666246 sc-eQTL 3.43e-01 0.086 0.0905 0.249 NK L1
ENSG00000172456 FGGY 902375 sc-eQTL 3.73e-01 0.089 0.0995 0.249 NK L1
ENSG00000134709 HOOK1 384227 sc-eQTL 8.03e-01 -0.0219 0.0876 0.25 Other_T L1
ENSG00000162599 NFIA -666246 sc-eQTL 4.26e-01 0.0743 0.0931 0.25 Other_T L1
ENSG00000172456 FGGY 902375 sc-eQTL 9.65e-01 0.00456 0.104 0.25 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 384227 sc-eQTL 7.92e-01 0.0221 0.0839 0.255 B_Activated L2
ENSG00000172456 FGGY 902375 sc-eQTL 2.23e-01 0.12 0.098 0.255 B_Activated L2
ENSG00000134709 HOOK1 384227 sc-eQTL 5.30e-01 0.0642 0.102 0.249 B_Intermediate L2
ENSG00000172456 FGGY 902375 sc-eQTL 9.85e-01 0.00184 0.0986 0.249 B_Intermediate L2
ENSG00000134709 HOOK1 384227 sc-eQTL 2.98e-01 -0.0945 0.0905 0.25 B_Memory L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.77e-03 0.3 0.102 0.25 B_Memory L2
ENSG00000134709 HOOK1 384227 sc-eQTL 4.87e-01 0.0685 0.0985 0.25 B_Naive1 L2
ENSG00000172456 FGGY 902375 sc-eQTL 6.94e-01 0.042 0.107 0.25 B_Naive1 L2
ENSG00000134709 HOOK1 384227 sc-eQTL 3.97e-01 -0.0846 0.0997 0.249 B_Naive2 L2
ENSG00000172456 FGGY 902375 sc-eQTL 5.26e-01 -0.0645 0.101 0.249 B_Naive2 L2
ENSG00000134709 HOOK1 384227 sc-eQTL 8.50e-02 0.151 0.0875 0.25 CD4_CTL L2
ENSG00000162599 NFIA -666246 sc-eQTL 6.09e-01 0.0485 0.0947 0.25 CD4_CTL L2
ENSG00000172456 FGGY 902375 sc-eQTL 6.39e-02 0.175 0.0939 0.25 CD4_CTL L2
ENSG00000134709 HOOK1 384227 sc-eQTL 1.53e-01 0.103 0.0717 0.25 CD4_Naive L2
ENSG00000162599 NFIA -666246 sc-eQTL 9.40e-02 -0.148 0.0879 0.25 CD4_Naive L2
ENSG00000172456 FGGY 902375 sc-eQTL 9.40e-01 -0.0079 0.105 0.25 CD4_Naive L2
ENSG00000134709 HOOK1 384227 sc-eQTL 2.81e-01 0.084 0.0778 0.25 CD4_TCM L2
ENSG00000162599 NFIA -666246 sc-eQTL 4.26e-01 -0.0741 0.0929 0.25 CD4_TCM L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.40e-02 0.216 0.101 0.25 CD4_TCM L2
ENSG00000134709 HOOK1 384227 sc-eQTL 6.62e-01 -0.0456 0.104 0.25 CD4_TEM L2
ENSG00000162599 NFIA -666246 sc-eQTL 9.92e-02 -0.166 0.1 0.25 CD4_TEM L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.83e-01 -0.0873 0.0999 0.25 CD4_TEM L2
ENSG00000134709 HOOK1 384227 sc-eQTL 2.05e-01 0.116 0.0915 0.25 CD8_CTL L2
ENSG00000162599 NFIA -666246 sc-eQTL 1.47e-01 0.146 0.101 0.25 CD8_CTL L2
ENSG00000172456 FGGY 902375 sc-eQTL 6.11e-01 -0.0525 0.103 0.25 CD8_CTL L2
ENSG00000134709 HOOK1 384227 sc-eQTL 2.47e-01 0.101 0.0872 0.25 CD8_Naive L2
ENSG00000162599 NFIA -666246 sc-eQTL 1.35e-01 -0.147 0.0979 0.25 CD8_Naive L2
ENSG00000172456 FGGY 902375 sc-eQTL 5.83e-01 0.0581 0.106 0.25 CD8_Naive L2
ENSG00000134709 HOOK1 384227 sc-eQTL 8.24e-01 -0.0218 0.0978 0.252 CD8_TCM L2
ENSG00000162599 NFIA -666246 sc-eQTL 8.95e-01 0.0137 0.104 0.252 CD8_TCM L2
ENSG00000172456 FGGY 902375 sc-eQTL 1.03e-01 0.17 0.104 0.252 CD8_TCM L2
ENSG00000134709 HOOK1 384227 sc-eQTL 7.53e-01 -0.0292 0.0928 0.251 CD8_TEM L2
ENSG00000162599 NFIA -666246 sc-eQTL 6.95e-02 -0.193 0.106 0.251 CD8_TEM L2
ENSG00000172456 FGGY 902375 sc-eQTL 7.15e-01 0.0391 0.107 0.251 CD8_TEM L2
ENSG00000134709 HOOK1 384227 sc-eQTL 8.07e-01 -0.0231 0.0945 0.249 MAIT L2
ENSG00000162599 NFIA -666246 sc-eQTL 6.05e-01 0.0498 0.0963 0.249 MAIT L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.84e-01 0.0889 0.102 0.249 MAIT L2
ENSG00000162599 NFIA -666246 sc-eQTL 9.79e-01 -0.00257 0.0968 0.251 NK_CD56bright L2
ENSG00000172456 FGGY 902375 sc-eQTL 1.52e-01 -0.143 0.0997 0.251 NK_CD56bright L2
ENSG00000162599 NFIA -666246 sc-eQTL 4.40e-01 0.0762 0.0984 0.25 NK_CD56dim L2
ENSG00000172456 FGGY 902375 sc-eQTL 9.97e-01 0.000369 0.106 0.25 NK_CD56dim L2
ENSG00000162599 NFIA -666246 sc-eQTL 7.40e-01 0.0328 0.0985 0.253 NK_HLA L2
ENSG00000172456 FGGY 902375 sc-eQTL 8.69e-01 0.0166 0.1 0.253 NK_HLA L2
ENSG00000162599 NFIA -666246 sc-eQTL 3.54e-01 0.0893 0.0962 0.25 NK_cytokine L2
ENSG00000172456 FGGY 902375 sc-eQTL 1.10e-01 0.157 0.0974 0.25 NK_cytokine L2
ENSG00000134709 HOOK1 384227 sc-eQTL 5.81e-01 0.073 0.132 0.215 PB L2
ENSG00000172456 FGGY 902375 sc-eQTL 8.76e-01 0.0203 0.13 0.215 PB L2
ENSG00000134709 HOOK1 384227 sc-eQTL 4.71e-01 0.0631 0.0874 0.252 Pro_T L2
ENSG00000162599 NFIA -666246 sc-eQTL 4.02e-02 -0.191 0.0927 0.252 Pro_T L2
ENSG00000172456 FGGY 902375 sc-eQTL 5.47e-01 0.0612 0.102 0.252 Pro_T L2
ENSG00000134709 HOOK1 384227 sc-eQTL 2.41e-01 -0.101 0.086 0.25 Treg L2
ENSG00000162599 NFIA -666246 sc-eQTL 6.99e-01 0.0375 0.0966 0.25 Treg L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.99e-01 0.0836 0.0989 0.25 Treg L2
ENSG00000162599 NFIA -666246 sc-eQTL 7.19e-01 -0.0328 0.091 0.254 cDC L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.63e-01 0.0875 0.0959 0.254 cDC L2
ENSG00000162599 NFIA -666246 sc-eQTL 2.31e-01 0.0773 0.0644 0.25 cMono_IL1B L2
ENSG00000172456 FGGY 902375 sc-eQTL 1.97e-01 0.128 0.0988 0.25 cMono_IL1B L2
ENSG00000162599 NFIA -666246 sc-eQTL 5.04e-01 0.0476 0.0712 0.25 cMono_S100A L2
ENSG00000172456 FGGY 902375 sc-eQTL 6.25e-01 0.0499 0.102 0.25 cMono_S100A L2
ENSG00000134709 HOOK1 384227 sc-eQTL 1.01e-01 0.168 0.102 0.261 gdT L2
ENSG00000162599 NFIA -666246 sc-eQTL 9.28e-01 -0.01 0.111 0.261 gdT L2
ENSG00000172456 FGGY 902375 sc-eQTL 8.56e-01 0.0203 0.112 0.261 gdT L2
ENSG00000162599 NFIA -666246 sc-eQTL 1.86e-01 0.119 0.0897 0.249 intMono L2
ENSG00000172456 FGGY 902375 sc-eQTL 9.09e-01 0.0107 0.0941 0.249 intMono L2
ENSG00000162599 NFIA -666246 sc-eQTL 5.63e-01 -0.0581 0.1 0.251 ncMono L2
ENSG00000172456 FGGY 902375 sc-eQTL 9.58e-01 -0.00517 0.097 0.251 ncMono L2
ENSG00000162599 NFIA -666246 sc-eQTL 3.31e-01 0.095 0.0975 0.249 pDC L2
ENSG00000172456 FGGY 902375 sc-eQTL 3.56e-01 0.0923 0.0998 0.249 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 384227 sc-eQTL 7.59e-01 0.0275 0.0898 0.25 B_Memory LOneK1K
ENSG00000172456 FGGY 902375 sc-eQTL 1.52e-01 0.134 0.0932 0.25 B_Memory LOneK1K
ENSG00000134709 HOOK1 384227 sc-eQTL 8.70e-01 0.0156 0.0956 0.25 B_Naive LOneK1K
ENSG00000172456 FGGY 902375 sc-eQTL 9.29e-01 0.00906 0.101 0.25 B_Naive LOneK1K
ENSG00000162599 NFIA -666246 sc-eQTL 2.87e-01 0.0652 0.0611 0.25 CD14_Mono LOneK1K
ENSG00000172456 FGGY 902375 sc-eQTL 3.04e-01 0.104 0.101 0.25 CD14_Mono LOneK1K
ENSG00000162599 NFIA -666246 sc-eQTL 8.34e-01 0.018 0.0858 0.248 CD16_Mono LOneK1K
ENSG00000172456 FGGY 902375 sc-eQTL 8.99e-01 -0.013 0.102 0.248 CD16_Mono LOneK1K
ENSG00000162599 NFIA -666246 sc-eQTL 2.94e-01 0.0975 0.0927 0.25 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 902375 sc-eQTL 1.67e-01 0.139 0.1 0.25 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 384227 eQTL 0.0321 0.0381 0.0177 0.0 0.0 0.216
ENSG00000134716 CYP2J2 272240 eQTL 3.96e-02 0.0751 0.0364 0.00116 0.0 0.216
ENSG00000162598 C1orf87 125243 eQTL 6.21e-12 0.23 0.0331 0.011 0.0106 0.216

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162598 C1orf87 125243 4.57e-06 5.08e-06 6.25e-07 3.08e-06 1.65e-06 1.66e-06 5.27e-06 1.15e-06 5e-06 2.97e-06 5.75e-06 3.36e-06 7.69e-06 1.97e-06 1.16e-06 3.9e-06 1.97e-06 3.82e-06 1.43e-06 1.39e-06 2.69e-06 4.88e-06 4.56e-06 1.87e-06 7.3e-06 1.94e-06 2.27e-06 1.71e-06 4.49e-06 4.27e-06 2.91e-06 4.97e-07 7.6e-07 2.16e-06 1.93e-06 1.26e-06 1.08e-06 5.45e-07 9.07e-07 6.17e-07 8.23e-07 5.71e-06 5.98e-07 1.59e-07 7.54e-07 1.08e-06 1.03e-06 6.81e-07 5.88e-07