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Genes within 1Mb (chr1:60193871:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 379085 sc-eQTL 5.74e-01 -0.0453 0.0805 0.56 B L1
ENSG00000172456 FGGY 897233 sc-eQTL 4.09e-01 -0.0726 0.0878 0.56 B L1
ENSG00000134709 HOOK1 379085 sc-eQTL 4.94e-02 0.103 0.0523 0.56 CD4T L1
ENSG00000162599 NFIA -671388 sc-eQTL 6.40e-01 0.0349 0.0744 0.56 CD4T L1
ENSG00000172456 FGGY 897233 sc-eQTL 5.95e-01 0.048 0.0902 0.56 CD4T L1
ENSG00000134709 HOOK1 379085 sc-eQTL 2.61e-01 0.0577 0.0513 0.56 CD8T L1
ENSG00000162599 NFIA -671388 sc-eQTL 2.43e-02 0.172 0.0757 0.56 CD8T L1
ENSG00000172456 FGGY 897233 sc-eQTL 9.14e-01 0.00994 0.0923 0.56 CD8T L1
ENSG00000162599 NFIA -671388 sc-eQTL 1.38e-01 -0.115 0.0772 0.559 DC L1
ENSG00000172456 FGGY 897233 sc-eQTL 5.99e-01 0.0452 0.086 0.559 DC L1
ENSG00000162599 NFIA -671388 sc-eQTL 1.27e-01 0.0829 0.0541 0.56 Mono L1
ENSG00000172456 FGGY 897233 sc-eQTL 2.77e-01 0.101 0.0926 0.56 Mono L1
ENSG00000162599 NFIA -671388 sc-eQTL 3.58e-01 0.076 0.0825 0.558 NK L1
ENSG00000172456 FGGY 897233 sc-eQTL 4.23e-01 -0.0728 0.0907 0.558 NK L1
ENSG00000134709 HOOK1 379085 sc-eQTL 6.55e-01 0.0356 0.0796 0.56 Other_T L1
ENSG00000162599 NFIA -671388 sc-eQTL 5.14e-01 0.0554 0.0848 0.56 Other_T L1
ENSG00000172456 FGGY 897233 sc-eQTL 4.61e-01 0.0697 0.0945 0.56 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 379085 sc-eQTL 3.59e-01 -0.0718 0.0781 0.561 B_Activated L2
ENSG00000172456 FGGY 897233 sc-eQTL 9.49e-01 -0.0059 0.0918 0.561 B_Activated L2
ENSG00000134709 HOOK1 379085 sc-eQTL 3.71e-01 0.0835 0.0931 0.56 B_Intermediate L2
ENSG00000172456 FGGY 897233 sc-eQTL 9.69e-01 0.00352 0.0901 0.56 B_Intermediate L2
ENSG00000134709 HOOK1 379085 sc-eQTL 3.07e-01 -0.0839 0.082 0.558 B_Memory L2
ENSG00000172456 FGGY 897233 sc-eQTL 1.84e-01 0.126 0.0942 0.558 B_Memory L2
ENSG00000134709 HOOK1 379085 sc-eQTL 8.75e-01 -0.0139 0.0884 0.56 B_Naive1 L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.65e-01 -0.07 0.0956 0.56 B_Naive1 L2
ENSG00000134709 HOOK1 379085 sc-eQTL 5.33e-01 -0.0562 0.0899 0.56 B_Naive2 L2
ENSG00000172456 FGGY 897233 sc-eQTL 9.84e-01 -0.00185 0.0915 0.56 B_Naive2 L2
ENSG00000134709 HOOK1 379085 sc-eQTL 1.64e-02 0.192 0.0793 0.561 CD4_CTL L2
ENSG00000162599 NFIA -671388 sc-eQTL 8.25e-01 0.0192 0.0866 0.561 CD4_CTL L2
ENSG00000172456 FGGY 897233 sc-eQTL 7.41e-02 0.154 0.0858 0.561 CD4_CTL L2
ENSG00000134709 HOOK1 379085 sc-eQTL 1.37e-01 0.0938 0.0629 0.56 CD4_Naive L2
ENSG00000162599 NFIA -671388 sc-eQTL 9.41e-01 0.00579 0.0777 0.56 CD4_Naive L2
ENSG00000172456 FGGY 897233 sc-eQTL 5.12e-01 -0.0604 0.092 0.56 CD4_Naive L2
ENSG00000134709 HOOK1 379085 sc-eQTL 4.24e-01 0.0559 0.0698 0.56 CD4_TCM L2
ENSG00000162599 NFIA -671388 sc-eQTL 6.26e-01 0.0407 0.0834 0.56 CD4_TCM L2
ENSG00000172456 FGGY 897233 sc-eQTL 2.50e-02 0.205 0.0908 0.56 CD4_TCM L2
ENSG00000134709 HOOK1 379085 sc-eQTL 8.73e-01 0.0149 0.0929 0.56 CD4_TEM L2
ENSG00000162599 NFIA -671388 sc-eQTL 6.53e-01 0.0406 0.09 0.56 CD4_TEM L2
ENSG00000172456 FGGY 897233 sc-eQTL 1.03e-01 -0.145 0.0887 0.56 CD4_TEM L2
ENSG00000134709 HOOK1 379085 sc-eQTL 3.75e-01 0.0726 0.0816 0.56 CD8_CTL L2
ENSG00000162599 NFIA -671388 sc-eQTL 8.08e-03 0.237 0.0885 0.56 CD8_CTL L2
ENSG00000172456 FGGY 897233 sc-eQTL 8.46e-01 -0.0179 0.0916 0.56 CD8_CTL L2
ENSG00000134709 HOOK1 379085 sc-eQTL 3.86e-01 0.0668 0.0769 0.56 CD8_Naive L2
ENSG00000162599 NFIA -671388 sc-eQTL 3.73e-01 0.0773 0.0866 0.56 CD8_Naive L2
ENSG00000172456 FGGY 897233 sc-eQTL 2.07e-01 0.117 0.0928 0.56 CD8_Naive L2
ENSG00000134709 HOOK1 379085 sc-eQTL 3.07e-01 -0.0884 0.0863 0.56 CD8_TCM L2
ENSG00000162599 NFIA -671388 sc-eQTL 9.12e-01 -0.0102 0.092 0.56 CD8_TCM L2
ENSG00000172456 FGGY 897233 sc-eQTL 6.34e-01 0.0441 0.0923 0.56 CD8_TCM L2
ENSG00000134709 HOOK1 379085 sc-eQTL 9.96e-01 0.000408 0.0835 0.571 CD8_TEM L2
ENSG00000162599 NFIA -671388 sc-eQTL 2.33e-01 -0.114 0.0955 0.571 CD8_TEM L2
ENSG00000172456 FGGY 897233 sc-eQTL 1.67e-01 0.133 0.0955 0.571 CD8_TEM L2
ENSG00000134709 HOOK1 379085 sc-eQTL 9.46e-01 0.00575 0.0853 0.561 MAIT L2
ENSG00000162599 NFIA -671388 sc-eQTL 7.63e-01 0.0262 0.0869 0.561 MAIT L2
ENSG00000172456 FGGY 897233 sc-eQTL 5.69e-02 0.175 0.0913 0.561 MAIT L2
ENSG00000162599 NFIA -671388 sc-eQTL 8.68e-01 -0.0146 0.0881 0.553 NK_CD56bright L2
ENSG00000172456 FGGY 897233 sc-eQTL 5.39e-01 -0.0561 0.0912 0.553 NK_CD56bright L2
ENSG00000162599 NFIA -671388 sc-eQTL 1.29e-01 0.133 0.0874 0.558 NK_CD56dim L2
ENSG00000172456 FGGY 897233 sc-eQTL 1.30e-01 -0.143 0.0943 0.558 NK_CD56dim L2
ENSG00000162599 NFIA -671388 sc-eQTL 8.18e-01 -0.0208 0.09 0.564 NK_HLA L2
ENSG00000172456 FGGY 897233 sc-eQTL 3.81e-01 0.0803 0.0916 0.564 NK_HLA L2
ENSG00000162599 NFIA -671388 sc-eQTL 4.85e-01 0.0609 0.087 0.558 NK_cytokine L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.90e-01 -0.0613 0.0885 0.558 NK_cytokine L2
ENSG00000134709 HOOK1 379085 sc-eQTL 8.81e-01 0.0171 0.114 0.533 PB L2
ENSG00000172456 FGGY 897233 sc-eQTL 6.55e-01 -0.05 0.112 0.533 PB L2
ENSG00000134709 HOOK1 379085 sc-eQTL 4.05e-01 0.0678 0.0813 0.563 Pro_T L2
ENSG00000162599 NFIA -671388 sc-eQTL 6.32e-02 -0.161 0.0864 0.563 Pro_T L2
ENSG00000172456 FGGY 897233 sc-eQTL 5.42e-01 0.0577 0.0945 0.563 Pro_T L2
ENSG00000134709 HOOK1 379085 sc-eQTL 9.54e-01 -0.00448 0.0773 0.56 Treg L2
ENSG00000162599 NFIA -671388 sc-eQTL 4.52e-01 0.0651 0.0865 0.56 Treg L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.39e-01 0.0687 0.0887 0.56 Treg L2
ENSG00000162599 NFIA -671388 sc-eQTL 2.40e-01 -0.096 0.0814 0.554 cDC L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.77e-02 0.17 0.0853 0.554 cDC L2
ENSG00000162599 NFIA -671388 sc-eQTL 3.15e-02 0.124 0.0572 0.56 cMono_IL1B L2
ENSG00000172456 FGGY 897233 sc-eQTL 5.88e-01 0.0481 0.0887 0.56 cMono_IL1B L2
ENSG00000162599 NFIA -671388 sc-eQTL 7.93e-01 0.0168 0.064 0.56 cMono_S100A L2
ENSG00000172456 FGGY 897233 sc-eQTL 9.62e-02 0.152 0.091 0.56 cMono_S100A L2
ENSG00000134709 HOOK1 379085 sc-eQTL 5.34e-01 0.0593 0.0952 0.555 gdT L2
ENSG00000162599 NFIA -671388 sc-eQTL 5.59e-01 0.06 0.102 0.555 gdT L2
ENSG00000172456 FGGY 897233 sc-eQTL 1.34e-01 -0.155 0.103 0.555 gdT L2
ENSG00000162599 NFIA -671388 sc-eQTL 6.75e-01 0.034 0.081 0.564 intMono L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.78e-01 -0.0601 0.0845 0.564 intMono L2
ENSG00000162599 NFIA -671388 sc-eQTL 7.11e-01 0.0336 0.0906 0.554 ncMono L2
ENSG00000172456 FGGY 897233 sc-eQTL 3.12e-01 0.0887 0.0874 0.554 ncMono L2
ENSG00000162599 NFIA -671388 sc-eQTL 6.70e-01 0.0381 0.0893 0.542 pDC L2
ENSG00000172456 FGGY 897233 sc-eQTL 4.25e-01 -0.073 0.0913 0.542 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 379085 sc-eQTL 8.17e-01 0.0189 0.0818 0.56 B_Memory LOneK1K
ENSG00000172456 FGGY 897233 sc-eQTL 6.80e-01 0.0352 0.0853 0.56 B_Memory LOneK1K
ENSG00000134709 HOOK1 379085 sc-eQTL 8.29e-01 -0.0185 0.0854 0.56 B_Naive LOneK1K
ENSG00000172456 FGGY 897233 sc-eQTL 3.53e-01 -0.0841 0.0904 0.56 B_Naive LOneK1K
ENSG00000162599 NFIA -671388 sc-eQTL 2.32e-01 0.0654 0.0545 0.56 CD14_Mono LOneK1K
ENSG00000172456 FGGY 897233 sc-eQTL 2.73e-01 0.0991 0.0902 0.56 CD14_Mono LOneK1K
ENSG00000162599 NFIA -671388 sc-eQTL 3.41e-01 0.073 0.0764 0.558 CD16_Mono LOneK1K
ENSG00000172456 FGGY 897233 sc-eQTL 8.98e-01 0.0117 0.0914 0.558 CD16_Mono LOneK1K
ENSG00000162599 NFIA -671388 sc-eQTL 2.18e-01 0.104 0.0838 0.558 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 897233 sc-eQTL 4.81e-01 -0.0643 0.0911 0.558 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 379085 eQTL 0.0114 0.0376 0.0148 0.0 0.0 0.456
ENSG00000162598 C1orf87 120101 eQTL 0.0167 0.0678 0.0283 0.0 0.0 0.456

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162598 C1orf87 120101 4.6e-06 4.93e-06 6.06e-07 2.95e-06 1.75e-06 1.64e-06 5.03e-06 1.17e-06 5.13e-06 2.65e-06 5.69e-06 3.27e-06 7.46e-06 2.15e-06 1.21e-06 3.85e-06 1.97e-06 3.75e-06 1.45e-06 1.39e-06 2.75e-06 5e-06 4.56e-06 1.7e-06 6.72e-06 2.05e-06 2.27e-06 1.52e-06 4.47e-06 4.38e-06 2.83e-06 4.18e-07 7.14e-07 1.9e-06 2.03e-06 1.18e-06 1.08e-06 4.71e-07 8.52e-07 5.75e-07 8.36e-07 5.56e-06 4e-07 1.66e-07 7.49e-07 1.18e-06 1.17e-06 6.58e-07 5.12e-07