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Genes within 1Mb (chr1:60133579:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 318793 sc-eQTL 8.29e-01 -0.0176 0.0813 0.579 B L1
ENSG00000172456 FGGY 836941 sc-eQTL 9.35e-01 -0.00728 0.0887 0.579 B L1
ENSG00000134709 HOOK1 318793 sc-eQTL 3.65e-02 -0.111 0.0526 0.579 CD4T L1
ENSG00000162599 NFIA -731680 sc-eQTL 2.21e-02 0.171 0.074 0.579 CD4T L1
ENSG00000172456 FGGY 836941 sc-eQTL 4.85e-02 -0.178 0.09 0.579 CD4T L1
ENSG00000134709 HOOK1 318793 sc-eQTL 3.69e-01 -0.0458 0.0508 0.579 CD8T L1
ENSG00000162599 NFIA -731680 sc-eQTL 9.90e-01 0.000991 0.0759 0.579 CD8T L1
ENSG00000172456 FGGY 836941 sc-eQTL 7.36e-01 -0.0309 0.0914 0.579 CD8T L1
ENSG00000162599 NFIA -731680 sc-eQTL 4.98e-01 0.0523 0.0771 0.577 DC L1
ENSG00000172456 FGGY 836941 sc-eQTL 2.27e-01 -0.103 0.0852 0.577 DC L1
ENSG00000162599 NFIA -731680 sc-eQTL 2.44e-02 -0.124 0.0549 0.579 Mono L1
ENSG00000172456 FGGY 836941 sc-eQTL 3.34e-01 -0.0917 0.0946 0.579 Mono L1
ENSG00000162599 NFIA -731680 sc-eQTL 8.16e-01 0.0194 0.083 0.582 NK L1
ENSG00000172456 FGGY 836941 sc-eQTL 9.20e-01 0.00923 0.0913 0.582 NK L1
ENSG00000134709 HOOK1 318793 sc-eQTL 8.78e-01 0.0121 0.0793 0.579 Other_T L1
ENSG00000162599 NFIA -731680 sc-eQTL 6.96e-01 -0.033 0.0844 0.579 Other_T L1
ENSG00000172456 FGGY 836941 sc-eQTL 9.78e-01 0.00255 0.0941 0.579 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 318793 sc-eQTL 2.92e-01 0.0814 0.077 0.574 B_Activated L2
ENSG00000172456 FGGY 836941 sc-eQTL 1.36e-01 -0.135 0.09 0.574 B_Activated L2
ENSG00000134709 HOOK1 318793 sc-eQTL 3.43e-01 -0.0887 0.0932 0.579 B_Intermediate L2
ENSG00000172456 FGGY 836941 sc-eQTL 7.15e-01 -0.0329 0.0901 0.579 B_Intermediate L2
ENSG00000134709 HOOK1 318793 sc-eQTL 5.19e-01 0.0533 0.0825 0.578 B_Memory L2
ENSG00000172456 FGGY 836941 sc-eQTL 1.90e-01 -0.124 0.0946 0.578 B_Memory L2
ENSG00000134709 HOOK1 318793 sc-eQTL 7.45e-01 -0.0291 0.0895 0.579 B_Naive1 L2
ENSG00000172456 FGGY 836941 sc-eQTL 9.66e-01 0.00416 0.097 0.579 B_Naive1 L2
ENSG00000134709 HOOK1 318793 sc-eQTL 7.92e-01 -0.0241 0.0913 0.579 B_Naive2 L2
ENSG00000172456 FGGY 836941 sc-eQTL 8.12e-01 0.0221 0.0928 0.579 B_Naive2 L2
ENSG00000134709 HOOK1 318793 sc-eQTL 7.43e-02 -0.14 0.078 0.582 CD4_CTL L2
ENSG00000162599 NFIA -731680 sc-eQTL 8.60e-01 -0.015 0.0846 0.582 CD4_CTL L2
ENSG00000172456 FGGY 836941 sc-eQTL 6.47e-02 -0.156 0.0838 0.582 CD4_CTL L2
ENSG00000134709 HOOK1 318793 sc-eQTL 1.36e-01 -0.0954 0.0637 0.579 CD4_Naive L2
ENSG00000162599 NFIA -731680 sc-eQTL 6.23e-03 0.213 0.0773 0.579 CD4_Naive L2
ENSG00000172456 FGGY 836941 sc-eQTL 6.27e-01 -0.0454 0.0932 0.579 CD4_Naive L2
ENSG00000134709 HOOK1 318793 sc-eQTL 2.08e-01 -0.0891 0.0705 0.579 CD4_TCM L2
ENSG00000162599 NFIA -731680 sc-eQTL 2.15e-01 0.105 0.0841 0.579 CD4_TCM L2
ENSG00000172456 FGGY 836941 sc-eQTL 1.76e-02 -0.22 0.0917 0.579 CD4_TCM L2
ENSG00000134709 HOOK1 318793 sc-eQTL 9.05e-01 0.0112 0.0937 0.579 CD4_TEM L2
ENSG00000162599 NFIA -731680 sc-eQTL 2.10e-01 0.114 0.0904 0.579 CD4_TEM L2
ENSG00000172456 FGGY 836941 sc-eQTL 7.48e-02 0.16 0.0893 0.579 CD4_TEM L2
ENSG00000134709 HOOK1 318793 sc-eQTL 2.61e-01 -0.0928 0.0823 0.579 CD8_CTL L2
ENSG00000162599 NFIA -731680 sc-eQTL 2.61e-01 -0.102 0.0906 0.579 CD8_CTL L2
ENSG00000172456 FGGY 836941 sc-eQTL 7.38e-01 0.031 0.0925 0.579 CD8_CTL L2
ENSG00000134709 HOOK1 318793 sc-eQTL 4.88e-01 -0.0537 0.0774 0.579 CD8_Naive L2
ENSG00000162599 NFIA -731680 sc-eQTL 8.86e-01 0.0125 0.0872 0.579 CD8_Naive L2
ENSG00000172456 FGGY 836941 sc-eQTL 6.33e-01 -0.0448 0.0936 0.579 CD8_Naive L2
ENSG00000134709 HOOK1 318793 sc-eQTL 4.85e-01 0.0605 0.0865 0.581 CD8_TCM L2
ENSG00000162599 NFIA -731680 sc-eQTL 2.83e-01 -0.0988 0.0918 0.581 CD8_TCM L2
ENSG00000172456 FGGY 836941 sc-eQTL 1.60e-01 -0.13 0.092 0.581 CD8_TCM L2
ENSG00000134709 HOOK1 318793 sc-eQTL 6.98e-01 0.0323 0.0832 0.578 CD8_TEM L2
ENSG00000162599 NFIA -731680 sc-eQTL 1.15e-02 0.24 0.094 0.578 CD8_TEM L2
ENSG00000172456 FGGY 836941 sc-eQTL 4.31e-01 -0.0754 0.0955 0.578 CD8_TEM L2
ENSG00000134709 HOOK1 318793 sc-eQTL 3.99e-01 0.072 0.0852 0.58 MAIT L2
ENSG00000162599 NFIA -731680 sc-eQTL 3.58e-01 -0.08 0.0868 0.58 MAIT L2
ENSG00000172456 FGGY 836941 sc-eQTL 3.77e-01 -0.0814 0.092 0.58 MAIT L2
ENSG00000162599 NFIA -731680 sc-eQTL 6.91e-01 0.0354 0.089 0.587 NK_CD56bright L2
ENSG00000172456 FGGY 836941 sc-eQTL 1.65e-01 0.128 0.0918 0.587 NK_CD56bright L2
ENSG00000162599 NFIA -731680 sc-eQTL 8.97e-01 0.0115 0.0885 0.582 NK_CD56dim L2
ENSG00000172456 FGGY 836941 sc-eQTL 6.44e-01 0.0442 0.0955 0.582 NK_CD56dim L2
ENSG00000162599 NFIA -731680 sc-eQTL 4.31e-01 -0.0714 0.0905 0.575 NK_HLA L2
ENSG00000172456 FGGY 836941 sc-eQTL 5.42e-01 -0.0563 0.0923 0.575 NK_HLA L2
ENSG00000162599 NFIA -731680 sc-eQTL 7.37e-01 0.0296 0.0881 0.582 NK_cytokine L2
ENSG00000172456 FGGY 836941 sc-eQTL 8.43e-01 0.0177 0.0896 0.582 NK_cytokine L2
ENSG00000134709 HOOK1 318793 sc-eQTL 5.13e-01 -0.0767 0.117 0.6 PB L2
ENSG00000172456 FGGY 836941 sc-eQTL 8.64e-01 0.0198 0.115 0.6 PB L2
ENSG00000134709 HOOK1 318793 sc-eQTL 2.59e-01 -0.09 0.0796 0.576 Pro_T L2
ENSG00000162599 NFIA -731680 sc-eQTL 9.03e-02 0.144 0.0848 0.576 Pro_T L2
ENSG00000172456 FGGY 836941 sc-eQTL 4.87e-02 -0.182 0.0918 0.576 Pro_T L2
ENSG00000134709 HOOK1 318793 sc-eQTL 5.97e-01 -0.0413 0.0779 0.579 Treg L2
ENSG00000162599 NFIA -731680 sc-eQTL 5.45e-01 -0.0529 0.0873 0.579 Treg L2
ENSG00000172456 FGGY 836941 sc-eQTL 7.18e-02 -0.161 0.0889 0.579 Treg L2
ENSG00000162599 NFIA -731680 sc-eQTL 2.34e-01 0.0976 0.0817 0.585 cDC L2
ENSG00000172456 FGGY 836941 sc-eQTL 5.23e-02 -0.167 0.0857 0.585 cDC L2
ENSG00000162599 NFIA -731680 sc-eQTL 5.40e-02 -0.113 0.0583 0.579 cMono_IL1B L2
ENSG00000172456 FGGY 836941 sc-eQTL 5.33e-01 -0.0564 0.0902 0.579 cMono_IL1B L2
ENSG00000162599 NFIA -731680 sc-eQTL 3.76e-02 -0.134 0.0639 0.579 cMono_S100A L2
ENSG00000172456 FGGY 836941 sc-eQTL 2.74e-01 -0.101 0.0921 0.579 cMono_S100A L2
ENSG00000134709 HOOK1 318793 sc-eQTL 4.78e-01 -0.0654 0.0919 0.591 gdT L2
ENSG00000162599 NFIA -731680 sc-eQTL 6.18e-01 0.0495 0.099 0.591 gdT L2
ENSG00000172456 FGGY 836941 sc-eQTL 3.65e-01 0.0908 0.0999 0.591 gdT L2
ENSG00000162599 NFIA -731680 sc-eQTL 5.76e-01 -0.0458 0.0819 0.578 intMono L2
ENSG00000172456 FGGY 836941 sc-eQTL 5.92e-01 0.0459 0.0855 0.578 intMono L2
ENSG00000162599 NFIA -731680 sc-eQTL 8.07e-01 -0.0223 0.0911 0.588 ncMono L2
ENSG00000172456 FGGY 836941 sc-eQTL 8.17e-01 -0.0204 0.088 0.588 ncMono L2
ENSG00000162599 NFIA -731680 sc-eQTL 1.20e-01 -0.135 0.0865 0.599 pDC L2
ENSG00000172456 FGGY 836941 sc-eQTL 6.89e-01 -0.0358 0.0891 0.599 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 318793 sc-eQTL 7.23e-01 -0.029 0.0818 0.579 B_Memory LOneK1K
ENSG00000172456 FGGY 836941 sc-eQTL 4.04e-01 -0.0713 0.0852 0.579 B_Memory LOneK1K
ENSG00000134709 HOOK1 318793 sc-eQTL 6.22e-01 -0.0427 0.0864 0.579 B_Naive LOneK1K
ENSG00000172456 FGGY 836941 sc-eQTL 9.14e-01 0.00988 0.0917 0.579 B_Naive LOneK1K
ENSG00000162599 NFIA -731680 sc-eQTL 5.04e-02 -0.108 0.055 0.579 CD14_Mono LOneK1K
ENSG00000172456 FGGY 836941 sc-eQTL 2.98e-01 -0.0956 0.0916 0.579 CD14_Mono LOneK1K
ENSG00000162599 NFIA -731680 sc-eQTL 2.33e-01 -0.0933 0.078 0.582 CD16_Mono LOneK1K
ENSG00000172456 FGGY 836941 sc-eQTL 8.13e-01 0.0221 0.0934 0.582 CD16_Mono LOneK1K
ENSG00000162599 NFIA -731680 sc-eQTL 9.03e-01 0.0102 0.0844 0.582 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 836941 sc-eQTL 6.24e-01 -0.045 0.0915 0.582 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 318793 eQTL 0.0322 -0.0324 0.0151 0.0 0.0 0.415
ENSG00000162598 C1orf87 59809 eQTL 0.0423 -0.0585 0.0288 0.0 0.0 0.415

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162598 C1orf87 59809 8.64e-06 1.24e-05 1.23e-06 5.59e-06 1.88e-06 4.21e-06 1.02e-05 1.5e-06 8.87e-06 4.7e-06 1.23e-05 5.25e-06 1.58e-05 3.68e-06 2.49e-06 6.03e-06 4.57e-06 6.51e-06 2.6e-06 2.66e-06 4.51e-06 8.85e-06 7.23e-06 2.68e-06 1.49e-05 3.11e-06 4.47e-06 3.11e-06 9.12e-06 9.08e-06 6.24e-06 5.85e-07 9.22e-07 2.78e-06 4.09e-06 2.31e-06 1.55e-06 1.83e-06 1.79e-06 9.87e-07 6.91e-07 1.36e-05 1.3e-06 1.53e-07 7.84e-07 1.28e-06 9.55e-07 6.23e-07 5.78e-07