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Genes within 1Mb (chr1:59937069:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 122283 sc-eQTL 1.49e-02 0.354 0.144 0.083 B L1
ENSG00000172456 FGGY 640431 sc-eQTL 3.74e-01 0.142 0.159 0.083 B L1
ENSG00000134709 HOOK1 122283 sc-eQTL 1.37e-01 0.141 0.0945 0.083 CD4T L1
ENSG00000162599 NFIA -928190 sc-eQTL 9.97e-01 -0.000517 0.134 0.083 CD4T L1
ENSG00000172456 FGGY 640431 sc-eQTL 5.51e-01 0.0969 0.162 0.083 CD4T L1
ENSG00000134709 HOOK1 122283 sc-eQTL 3.56e-01 0.0859 0.093 0.083 CD8T L1
ENSG00000162599 NFIA -928190 sc-eQTL 4.04e-01 0.116 0.139 0.083 CD8T L1
ENSG00000172456 FGGY 640431 sc-eQTL 4.11e-01 0.137 0.167 0.083 CD8T L1
ENSG00000162599 NFIA -928190 sc-eQTL 6.15e-01 -0.0696 0.138 0.083 DC L1
ENSG00000172456 FGGY 640431 sc-eQTL 2.57e-01 0.174 0.153 0.083 DC L1
ENSG00000162599 NFIA -928190 sc-eQTL 6.69e-01 0.0422 0.0986 0.083 Mono L1
ENSG00000172456 FGGY 640431 sc-eQTL 5.45e-01 0.102 0.168 0.083 Mono L1
ENSG00000162599 NFIA -928190 sc-eQTL 1.71e-01 -0.202 0.147 0.082 NK L1
ENSG00000172456 FGGY 640431 sc-eQTL 5.19e-01 0.105 0.162 0.082 NK L1
ENSG00000134709 HOOK1 122283 sc-eQTL 9.65e-01 -0.00623 0.143 0.083 Other_T L1
ENSG00000162599 NFIA -928190 sc-eQTL 5.50e-01 -0.091 0.152 0.083 Other_T L1
ENSG00000172456 FGGY 640431 sc-eQTL 3.93e-02 -0.348 0.168 0.083 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 122283 sc-eQTL 8.78e-01 0.0218 0.142 0.089 B_Activated L2
ENSG00000172456 FGGY 640431 sc-eQTL 5.35e-01 0.104 0.167 0.089 B_Activated L2
ENSG00000134709 HOOK1 122283 sc-eQTL 5.23e-01 0.108 0.168 0.084 B_Intermediate L2
ENSG00000172456 FGGY 640431 sc-eQTL 6.63e-01 -0.071 0.162 0.084 B_Intermediate L2
ENSG00000134709 HOOK1 122283 sc-eQTL 1.42e-02 0.359 0.145 0.082 B_Memory L2
ENSG00000172456 FGGY 640431 sc-eQTL 6.73e-01 0.0716 0.169 0.082 B_Memory L2
ENSG00000134709 HOOK1 122283 sc-eQTL 7.69e-02 0.281 0.158 0.083 B_Naive1 L2
ENSG00000172456 FGGY 640431 sc-eQTL 5.44e-01 0.105 0.172 0.083 B_Naive1 L2
ENSG00000134709 HOOK1 122283 sc-eQTL 7.56e-01 0.05 0.161 0.082 B_Naive2 L2
ENSG00000172456 FGGY 640431 sc-eQTL 6.07e-01 -0.0841 0.163 0.082 B_Naive2 L2
ENSG00000134709 HOOK1 122283 sc-eQTL 1.78e-01 -0.198 0.146 0.08 CD4_CTL L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.84e-01 -0.111 0.158 0.08 CD4_CTL L2
ENSG00000172456 FGGY 640431 sc-eQTL 6.65e-02 0.289 0.157 0.08 CD4_CTL L2
ENSG00000134709 HOOK1 122283 sc-eQTL 1.15e-01 0.178 0.113 0.083 CD4_Naive L2
ENSG00000162599 NFIA -928190 sc-eQTL 8.35e-01 0.029 0.139 0.083 CD4_Naive L2
ENSG00000172456 FGGY 640431 sc-eQTL 9.97e-01 -0.00069 0.165 0.083 CD4_Naive L2
ENSG00000134709 HOOK1 122283 sc-eQTL 3.52e-02 0.266 0.126 0.083 CD4_TCM L2
ENSG00000162599 NFIA -928190 sc-eQTL 5.00e-01 -0.102 0.151 0.083 CD4_TCM L2
ENSG00000172456 FGGY 640431 sc-eQTL 7.23e-01 0.0593 0.167 0.083 CD4_TCM L2
ENSG00000134709 HOOK1 122283 sc-eQTL 1.86e-01 -0.223 0.168 0.083 CD4_TEM L2
ENSG00000162599 NFIA -928190 sc-eQTL 9.74e-01 0.00536 0.164 0.083 CD4_TEM L2
ENSG00000172456 FGGY 640431 sc-eQTL 5.38e-01 0.1 0.162 0.083 CD4_TEM L2
ENSG00000134709 HOOK1 122283 sc-eQTL 1.24e-01 0.227 0.147 0.083 CD8_CTL L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.98e-01 0.11 0.162 0.083 CD8_CTL L2
ENSG00000172456 FGGY 640431 sc-eQTL 4.90e-01 -0.114 0.165 0.083 CD8_CTL L2
ENSG00000134709 HOOK1 122283 sc-eQTL 8.34e-01 -0.0296 0.141 0.083 CD8_Naive L2
ENSG00000162599 NFIA -928190 sc-eQTL 9.54e-01 0.00919 0.158 0.083 CD8_Naive L2
ENSG00000172456 FGGY 640431 sc-eQTL 7.40e-01 -0.0565 0.17 0.083 CD8_Naive L2
ENSG00000134709 HOOK1 122283 sc-eQTL 8.27e-01 0.0352 0.16 0.081 CD8_TCM L2
ENSG00000162599 NFIA -928190 sc-eQTL 5.30e-01 0.107 0.17 0.081 CD8_TCM L2
ENSG00000172456 FGGY 640431 sc-eQTL 7.75e-01 0.049 0.171 0.081 CD8_TCM L2
ENSG00000134709 HOOK1 122283 sc-eQTL 3.25e-01 0.146 0.148 0.084 CD8_TEM L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.08e-01 0.141 0.17 0.084 CD8_TEM L2
ENSG00000172456 FGGY 640431 sc-eQTL 9.41e-01 0.0127 0.17 0.084 CD8_TEM L2
ENSG00000134709 HOOK1 122283 sc-eQTL 7.92e-01 -0.0409 0.155 0.082 MAIT L2
ENSG00000162599 NFIA -928190 sc-eQTL 3.89e-02 -0.325 0.156 0.082 MAIT L2
ENSG00000172456 FGGY 640431 sc-eQTL 4.79e-01 -0.118 0.167 0.082 MAIT L2
ENSG00000162599 NFIA -928190 sc-eQTL 5.51e-01 -0.0934 0.156 0.084 NK_CD56bright L2
ENSG00000172456 FGGY 640431 sc-eQTL 7.26e-01 0.0568 0.162 0.084 NK_CD56bright L2
ENSG00000162599 NFIA -928190 sc-eQTL 1.10e-01 -0.252 0.157 0.082 NK_CD56dim L2
ENSG00000172456 FGGY 640431 sc-eQTL 9.72e-01 0.00603 0.171 0.082 NK_CD56dim L2
ENSG00000162599 NFIA -928190 sc-eQTL 6.70e-01 -0.0663 0.155 0.084 NK_HLA L2
ENSG00000172456 FGGY 640431 sc-eQTL 9.96e-01 0.000797 0.158 0.084 NK_HLA L2
ENSG00000162599 NFIA -928190 sc-eQTL 7.26e-01 -0.0552 0.157 0.082 NK_cytokine L2
ENSG00000172456 FGGY 640431 sc-eQTL 7.04e-02 0.288 0.158 0.082 NK_cytokine L2
ENSG00000134709 HOOK1 122283 sc-eQTL 8.99e-01 -0.0253 0.198 0.074 PB L2
ENSG00000172456 FGGY 640431 sc-eQTL 4.84e-01 0.136 0.194 0.074 PB L2
ENSG00000134709 HOOK1 122283 sc-eQTL 9.40e-01 0.0107 0.141 0.083 Pro_T L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.17e-01 0.123 0.151 0.083 Pro_T L2
ENSG00000172456 FGGY 640431 sc-eQTL 2.39e-02 -0.368 0.162 0.083 Pro_T L2
ENSG00000134709 HOOK1 122283 sc-eQTL 9.61e-01 -0.00691 0.141 0.083 Treg L2
ENSG00000162599 NFIA -928190 sc-eQTL 8.18e-01 0.0365 0.158 0.083 Treg L2
ENSG00000172456 FGGY 640431 sc-eQTL 5.13e-01 -0.106 0.162 0.083 Treg L2
ENSG00000162599 NFIA -928190 sc-eQTL 7.21e-01 -0.0523 0.146 0.085 cDC L2
ENSG00000172456 FGGY 640431 sc-eQTL 1.08e-01 0.248 0.153 0.085 cDC L2
ENSG00000162599 NFIA -928190 sc-eQTL 3.89e-01 0.0895 0.104 0.083 cMono_IL1B L2
ENSG00000172456 FGGY 640431 sc-eQTL 2.86e-01 0.17 0.159 0.083 cMono_IL1B L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.43e-01 -0.0875 0.114 0.083 cMono_S100A L2
ENSG00000172456 FGGY 640431 sc-eQTL 4.51e-01 0.123 0.163 0.083 cMono_S100A L2
ENSG00000134709 HOOK1 122283 sc-eQTL 2.19e-01 -0.21 0.17 0.076 gdT L2
ENSG00000162599 NFIA -928190 sc-eQTL 5.63e-01 0.107 0.184 0.076 gdT L2
ENSG00000172456 FGGY 640431 sc-eQTL 5.67e-01 -0.107 0.186 0.076 gdT L2
ENSG00000162599 NFIA -928190 sc-eQTL 8.85e-01 -0.0212 0.146 0.082 intMono L2
ENSG00000172456 FGGY 640431 sc-eQTL 2.40e-01 -0.179 0.152 0.082 intMono L2
ENSG00000162599 NFIA -928190 sc-eQTL 4.39e-01 -0.127 0.163 0.084 ncMono L2
ENSG00000172456 FGGY 640431 sc-eQTL 6.70e-01 -0.0675 0.158 0.084 ncMono L2
ENSG00000162599 NFIA -928190 sc-eQTL 7.71e-01 0.0432 0.148 0.096 pDC L2
ENSG00000172456 FGGY 640431 sc-eQTL 9.12e-01 -0.0168 0.151 0.096 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 122283 sc-eQTL 3.59e-02 0.305 0.144 0.083 B_Memory LOneK1K
ENSG00000172456 FGGY 640431 sc-eQTL 5.17e-01 0.0987 0.152 0.083 B_Memory LOneK1K
ENSG00000134709 HOOK1 122283 sc-eQTL 1.16e-01 0.24 0.152 0.083 B_Naive LOneK1K
ENSG00000172456 FGGY 640431 sc-eQTL 7.83e-01 0.0448 0.162 0.083 B_Naive LOneK1K
ENSG00000162599 NFIA -928190 sc-eQTL 9.92e-01 0.000983 0.0991 0.083 CD14_Mono LOneK1K
ENSG00000172456 FGGY 640431 sc-eQTL 2.80e-01 0.177 0.163 0.083 CD14_Mono LOneK1K
ENSG00000162599 NFIA -928190 sc-eQTL 5.83e-01 -0.0766 0.139 0.082 CD16_Mono LOneK1K
ENSG00000172456 FGGY 640431 sc-eQTL 9.12e-02 -0.281 0.165 0.082 CD16_Mono LOneK1K
ENSG00000162599 NFIA -928190 sc-eQTL 1.56e-01 -0.213 0.15 0.082 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 640431 sc-eQTL 3.66e-01 0.147 0.163 0.082 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 122283 eQTL 0.00376 0.0718 0.0247 0.00232 0.0 0.103
ENSG00000134716 CYP2J2 10296 eQTL 3.22e-02 0.109 0.0509 0.00128 0.0 0.103

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000134709 HOOK1 122283 1.09e-05 1.23e-05 1.96e-06 6.74e-06 2.58e-06 4.35e-06 1.17e-05 2.09e-06 1.03e-05 5.44e-06 1.36e-05 6.22e-06 1.74e-05 4.2e-06 4.13e-06 6.75e-06 5.65e-06 9.58e-06 2.58e-06 2.77e-06 6.52e-06 1.1e-05 9.43e-06 3.35e-06 1.66e-05 4.29e-06 5.62e-06 4.83e-06 1.12e-05 8.01e-06 7.59e-06 9.95e-07 1.13e-06 3.1e-06 5.03e-06 2.68e-06 1.72e-06 1.92e-06 2.25e-06 9.84e-07 1.04e-06 1.58e-05 1.69e-06 1.52e-07 7.68e-07 1.74e-06 1.79e-06 7.25e-07 4.73e-07