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Genes within 1Mb (chr1:59809423:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.64e-01 -0.0687 0.119 0.145 B L1
ENSG00000172456 FGGY 512785 sc-eQTL 6.33e-01 0.062 0.13 0.145 B L1
ENSG00000237352 LINC01358 875780 sc-eQTL 4.70e-02 0.195 0.0976 0.145 B L1
ENSG00000134709 HOOK1 -5363 sc-eQTL 1.69e-01 -0.105 0.076 0.145 CD4T L1
ENSG00000172456 FGGY 512785 sc-eQTL 3.78e-01 0.115 0.13 0.145 CD4T L1
ENSG00000134709 HOOK1 -5363 sc-eQTL 8.40e-01 -0.0151 0.0744 0.145 CD8T L1
ENSG00000172456 FGGY 512785 sc-eQTL 4.62e-01 0.0982 0.133 0.145 CD8T L1
ENSG00000172456 FGGY 512785 sc-eQTL 2.54e-01 0.143 0.125 0.146 DC L1
ENSG00000172456 FGGY 512785 sc-eQTL 9.50e-01 -0.0087 0.139 0.145 Mono L1
ENSG00000172456 FGGY 512785 sc-eQTL 9.67e-01 -0.00535 0.13 0.144 NK L1
ENSG00000134709 HOOK1 -5363 sc-eQTL 3.70e-01 -0.104 0.115 0.145 Other_T L1
ENSG00000172456 FGGY 512785 sc-eQTL 2.39e-01 -0.162 0.137 0.145 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -5363 sc-eQTL 4.90e-01 -0.0797 0.115 0.156 B_Activated L2
ENSG00000172456 FGGY 512785 sc-eQTL 5.50e-01 0.0809 0.135 0.156 B_Activated L2
ENSG00000237352 LINC01358 875780 sc-eQTL 3.72e-01 0.112 0.125 0.156 B_Activated L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.93e-01 0.0726 0.136 0.146 B_Intermediate L2
ENSG00000172456 FGGY 512785 sc-eQTL 2.89e-01 -0.139 0.131 0.146 B_Intermediate L2
ENSG00000237352 LINC01358 875780 sc-eQTL 2.67e-01 -0.13 0.117 0.146 B_Intermediate L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.71e-01 0.068 0.12 0.142 B_Memory L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.37e-01 0.0284 0.138 0.142 B_Memory L2
ENSG00000237352 LINC01358 875780 sc-eQTL 9.52e-04 0.39 0.116 0.142 B_Memory L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 8.17e-01 -0.0299 0.129 0.145 B_Naive1 L2
ENSG00000172456 FGGY 512785 sc-eQTL 7.87e-01 0.0379 0.14 0.145 B_Naive1 L2
ENSG00000237352 LINC01358 875780 sc-eQTL 2.14e-01 -0.143 0.115 0.145 B_Naive1 L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 3.51e-02 -0.276 0.13 0.144 B_Naive2 L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.55e-01 0.0245 0.134 0.144 B_Naive2 L2
ENSG00000237352 LINC01358 875780 sc-eQTL 4.78e-01 0.0787 0.111 0.144 B_Naive2 L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 8.55e-02 -0.202 0.117 0.143 CD4_CTL L2
ENSG00000172456 FGGY 512785 sc-eQTL 6.95e-01 0.0495 0.126 0.143 CD4_CTL L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.20e-01 -0.059 0.0915 0.145 CD4_Naive L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.30e-01 0.0288 0.134 0.145 CD4_Naive L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 2.73e-01 -0.112 0.102 0.145 CD4_TCM L2
ENSG00000172456 FGGY 512785 sc-eQTL 6.47e-01 0.0617 0.135 0.145 CD4_TCM L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.48e-02 -0.264 0.137 0.145 CD4_TEM L2
ENSG00000172456 FGGY 512785 sc-eQTL 3.19e-01 0.132 0.132 0.145 CD4_TEM L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 4.87e-01 0.0829 0.119 0.145 CD8_CTL L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.19e-01 -0.0307 0.134 0.145 CD8_CTL L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.50e-01 -0.0681 0.114 0.145 CD8_Naive L2
ENSG00000172456 FGGY 512785 sc-eQTL 5.40e-01 0.0845 0.138 0.145 CD8_Naive L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.31e-01 0.0798 0.127 0.148 CD8_TCM L2
ENSG00000172456 FGGY 512785 sc-eQTL 6.89e-01 -0.0544 0.136 0.148 CD8_TCM L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 7.40e-01 -0.039 0.117 0.146 CD8_TEM L2
ENSG00000172456 FGGY 512785 sc-eQTL 5.51e-01 -0.0806 0.135 0.146 CD8_TEM L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 7.99e-01 -0.0319 0.125 0.145 MAIT L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.67e-01 -0.0227 0.135 0.145 MAIT L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.43e-01 -0.0263 0.133 0.149 NK_CD56bright L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.94e-01 0.0183 0.137 0.144 NK_CD56dim L2
ENSG00000172456 FGGY 512785 sc-eQTL 7.33e-01 0.0449 0.131 0.146 NK_HLA L2
ENSG00000172456 FGGY 512785 sc-eQTL 7.12e-01 0.0473 0.128 0.144 NK_cytokine L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 3.42e-01 -0.147 0.154 0.133 PB L2
ENSG00000172456 FGGY 512785 sc-eQTL 8.13e-02 0.263 0.149 0.133 PB L2
ENSG00000237352 LINC01358 875780 sc-eQTL 9.05e-03 0.331 0.125 0.133 PB L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 4.22e-01 -0.0922 0.115 0.143 Pro_T L2
ENSG00000172456 FGGY 512785 sc-eQTL 5.60e-02 -0.254 0.132 0.143 Pro_T L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 5.31e-01 -0.0713 0.114 0.145 Treg L2
ENSG00000172456 FGGY 512785 sc-eQTL 6.32e-01 0.0626 0.131 0.145 Treg L2
ENSG00000172456 FGGY 512785 sc-eQTL 2.63e-02 0.277 0.124 0.149 cDC L2
ENSG00000172456 FGGY 512785 sc-eQTL 7.43e-01 -0.043 0.131 0.145 cMono_IL1B L2
ENSG00000172456 FGGY 512785 sc-eQTL 4.05e-01 0.111 0.133 0.145 cMono_S100A L2
ENSG00000134709 HOOK1 -5363 sc-eQTL 3.74e-01 -0.127 0.143 0.145 gdT L2
ENSG00000172456 FGGY 512785 sc-eQTL 9.13e-01 0.0171 0.156 0.145 gdT L2
ENSG00000172456 FGGY 512785 sc-eQTL 4.34e-01 -0.096 0.122 0.142 intMono L2
ENSG00000172456 FGGY 512785 sc-eQTL 7.33e-01 -0.0438 0.128 0.149 ncMono L2
ENSG00000172456 FGGY 512785 sc-eQTL 1.35e-01 -0.197 0.131 0.164 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -5363 sc-eQTL 2.97e-01 0.124 0.119 0.145 B_Memory LOneK1K
ENSG00000172456 FGGY 512785 sc-eQTL 9.18e-01 -0.0128 0.124 0.145 B_Memory LOneK1K
ENSG00000237352 LINC01358 875780 sc-eQTL 1.66e-01 0.176 0.127 0.145 B_Memory LOneK1K
ENSG00000134709 HOOK1 -5363 sc-eQTL 2.08e-01 -0.157 0.124 0.145 B_Naive LOneK1K
ENSG00000172456 FGGY 512785 sc-eQTL 9.97e-01 -0.000561 0.132 0.145 B_Naive LOneK1K
ENSG00000237352 LINC01358 875780 sc-eQTL 3.57e-01 -0.114 0.123 0.145 B_Naive LOneK1K
ENSG00000172456 FGGY 512785 sc-eQTL 9.68e-01 0.00544 0.134 0.145 CD14_Mono LOneK1K
ENSG00000172456 FGGY 512785 sc-eQTL 3.57e-01 -0.124 0.134 0.144 CD16_Mono LOneK1K
ENSG00000172456 FGGY 512785 sc-eQTL 9.48e-01 0.00856 0.131 0.144 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 -5363 eQTL 0.809 0.00515 0.0213 0.00376 0.00109 0.154

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina