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Genes within 1Mb (chr1:59718001:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -96785 sc-eQTL 9.63e-01 -0.0042 0.0916 0.737 B L1
ENSG00000172456 FGGY 421363 sc-eQTL 6.72e-01 0.0424 0.0999 0.737 B L1
ENSG00000177606 JUN 933954 sc-eQTL 9.42e-01 -0.00471 0.0641 0.737 B L1
ENSG00000237352 LINC01358 784358 sc-eQTL 5.94e-01 0.0405 0.0759 0.737 B L1
ENSG00000134709 HOOK1 -96785 sc-eQTL 9.90e-01 0.000775 0.0601 0.737 CD4T L1
ENSG00000172456 FGGY 421363 sc-eQTL 9.78e-03 0.264 0.101 0.737 CD4T L1
ENSG00000177606 JUN 933954 sc-eQTL 7.72e-01 -0.0177 0.0608 0.737 CD4T L1
ENSG00000134709 HOOK1 -96785 sc-eQTL 5.70e-01 -0.0328 0.0577 0.737 CD8T L1
ENSG00000172456 FGGY 421363 sc-eQTL 5.25e-01 -0.0659 0.104 0.737 CD8T L1
ENSG00000177606 JUN 933954 sc-eQTL 7.51e-01 -0.0181 0.0569 0.737 CD8T L1
ENSG00000172456 FGGY 421363 sc-eQTL 3.67e-01 0.0856 0.0947 0.734 DC L1
ENSG00000177606 JUN 933954 sc-eQTL 8.47e-01 -0.0171 0.0887 0.734 DC L1
ENSG00000172456 FGGY 421363 sc-eQTL 7.63e-01 -0.0316 0.105 0.737 Mono L1
ENSG00000177606 JUN 933954 sc-eQTL 7.69e-01 0.0207 0.0705 0.737 Mono L1
ENSG00000172456 FGGY 421363 sc-eQTL 4.43e-01 0.0773 0.101 0.74 NK L1
ENSG00000177606 JUN 933954 sc-eQTL 3.57e-02 -0.131 0.0619 0.74 NK L1
ENSG00000134709 HOOK1 -96785 sc-eQTL 8.90e-01 -0.0126 0.0907 0.737 Other_T L1
ENSG00000172456 FGGY 421363 sc-eQTL 4.17e-01 0.0875 0.108 0.737 Other_T L1
ENSG00000177606 JUN 933954 sc-eQTL 7.70e-01 0.0169 0.0578 0.737 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -96785 sc-eQTL 8.34e-01 -0.0189 0.0897 0.742 B_Activated L2
ENSG00000172456 FGGY 421363 sc-eQTL 4.79e-01 -0.0745 0.105 0.742 B_Activated L2
ENSG00000177606 JUN 933954 sc-eQTL 8.83e-01 -0.0142 0.096 0.742 B_Activated L2
ENSG00000237352 LINC01358 784358 sc-eQTL 5.51e-01 -0.0582 0.0976 0.742 B_Activated L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 3.97e-01 0.0877 0.103 0.736 B_Intermediate L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.76e-01 -0.109 0.0995 0.736 B_Intermediate L2
ENSG00000177606 JUN 933954 sc-eQTL 9.04e-01 -0.00801 0.0664 0.736 B_Intermediate L2
ENSG00000237352 LINC01358 784358 sc-eQTL 2.76e-01 0.0973 0.0891 0.736 B_Intermediate L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 2.33e-01 0.108 0.0906 0.735 B_Memory L2
ENSG00000172456 FGGY 421363 sc-eQTL 9.83e-01 0.00224 0.105 0.735 B_Memory L2
ENSG00000177606 JUN 933954 sc-eQTL 5.22e-01 -0.0481 0.0749 0.735 B_Memory L2
ENSG00000237352 LINC01358 784358 sc-eQTL 8.32e-01 -0.0192 0.0905 0.735 B_Memory L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 3.27e-01 -0.0974 0.099 0.737 B_Naive1 L2
ENSG00000172456 FGGY 421363 sc-eQTL 5.82e-01 -0.0592 0.107 0.737 B_Naive1 L2
ENSG00000177606 JUN 933954 sc-eQTL 6.92e-01 -0.0245 0.0618 0.737 B_Naive1 L2
ENSG00000237352 LINC01358 784358 sc-eQTL 7.53e-01 0.0279 0.0884 0.737 B_Naive1 L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 7.59e-01 -0.0314 0.102 0.736 B_Naive2 L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.99e-01 0.108 0.104 0.736 B_Naive2 L2
ENSG00000177606 JUN 933954 sc-eQTL 6.50e-01 0.0331 0.0727 0.736 B_Naive2 L2
ENSG00000237352 LINC01358 784358 sc-eQTL 2.25e-01 0.104 0.0858 0.736 B_Naive2 L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 5.32e-01 -0.057 0.0911 0.739 CD4_CTL L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.07e-01 0.0368 0.098 0.739 CD4_CTL L2
ENSG00000177606 JUN 933954 sc-eQTL 4.83e-01 -0.0615 0.0875 0.739 CD4_CTL L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 6.22e-01 0.0355 0.0718 0.737 CD4_Naive L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.48e-02 0.234 0.103 0.737 CD4_Naive L2
ENSG00000177606 JUN 933954 sc-eQTL 9.27e-01 0.00545 0.0594 0.737 CD4_Naive L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 8.04e-01 -0.0199 0.08 0.737 CD4_TCM L2
ENSG00000172456 FGGY 421363 sc-eQTL 9.54e-02 0.175 0.104 0.737 CD4_TCM L2
ENSG00000177606 JUN 933954 sc-eQTL 7.42e-01 -0.0224 0.0679 0.737 CD4_TCM L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 9.25e-01 0.00998 0.105 0.737 CD4_TEM L2
ENSG00000172456 FGGY 421363 sc-eQTL 5.53e-01 -0.0601 0.101 0.737 CD4_TEM L2
ENSG00000177606 JUN 933954 sc-eQTL 4.58e-01 -0.0574 0.0773 0.737 CD4_TEM L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 5.75e-01 0.0518 0.0922 0.737 CD8_CTL L2
ENSG00000172456 FGGY 421363 sc-eQTL 3.73e-01 -0.0922 0.103 0.737 CD8_CTL L2
ENSG00000177606 JUN 933954 sc-eQTL 4.61e-01 -0.0505 0.0683 0.737 CD8_CTL L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 8.96e-02 -0.15 0.0877 0.737 CD8_Naive L2
ENSG00000172456 FGGY 421363 sc-eQTL 5.39e-01 -0.0657 0.107 0.737 CD8_Naive L2
ENSG00000177606 JUN 933954 sc-eQTL 9.87e-01 0.00124 0.0731 0.737 CD8_Naive L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 3.30e-01 0.0966 0.0989 0.729 CD8_TCM L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.39e-01 0.0353 0.106 0.729 CD8_TCM L2
ENSG00000177606 JUN 933954 sc-eQTL 2.79e-01 0.0841 0.0774 0.729 CD8_TCM L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 7.52e-01 -0.0288 0.0908 0.735 CD8_TEM L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.00e-01 0.0402 0.104 0.735 CD8_TEM L2
ENSG00000177606 JUN 933954 sc-eQTL 4.94e-01 -0.0522 0.0762 0.735 CD8_TEM L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 5.19e-01 -0.0617 0.0956 0.734 MAIT L2
ENSG00000172456 FGGY 421363 sc-eQTL 3.22e-01 -0.102 0.103 0.734 MAIT L2
ENSG00000177606 JUN 933954 sc-eQTL 8.22e-01 0.0165 0.0731 0.734 MAIT L2
ENSG00000172456 FGGY 421363 sc-eQTL 5.01e-01 -0.0695 0.103 0.738 NK_CD56bright L2
ENSG00000177606 JUN 933954 sc-eQTL 1.01e-01 -0.127 0.0771 0.738 NK_CD56bright L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.70e-02 0.189 0.106 0.741 NK_CD56dim L2
ENSG00000177606 JUN 933954 sc-eQTL 2.71e-02 -0.155 0.0697 0.741 NK_CD56dim L2
ENSG00000172456 FGGY 421363 sc-eQTL 3.06e-01 0.106 0.104 0.733 NK_HLA L2
ENSG00000177606 JUN 933954 sc-eQTL 2.15e-02 -0.216 0.0931 0.733 NK_HLA L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.65e-01 -0.0304 0.101 0.741 NK_cytokine L2
ENSG00000177606 JUN 933954 sc-eQTL 4.07e-03 -0.196 0.0676 0.741 NK_cytokine L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 6.55e-01 -0.0575 0.128 0.793 PB L2
ENSG00000172456 FGGY 421363 sc-eQTL 1.58e-01 0.178 0.125 0.793 PB L2
ENSG00000177606 JUN 933954 sc-eQTL 6.57e-01 0.0581 0.131 0.793 PB L2
ENSG00000237352 LINC01358 784358 sc-eQTL 9.59e-01 0.00553 0.107 0.793 PB L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 2.27e-02 0.205 0.0891 0.739 Pro_T L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.21e-01 0.128 0.104 0.739 Pro_T L2
ENSG00000177606 JUN 933954 sc-eQTL 3.74e-01 -0.0636 0.0713 0.739 Pro_T L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 1.69e-01 -0.121 0.0876 0.737 Treg L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.48e-01 0.117 0.101 0.737 Treg L2
ENSG00000177606 JUN 933954 sc-eQTL 6.18e-01 0.0277 0.0555 0.737 Treg L2
ENSG00000172456 FGGY 421363 sc-eQTL 3.39e-02 0.211 0.0987 0.737 cDC L2
ENSG00000177606 JUN 933954 sc-eQTL 8.17e-01 0.0207 0.0894 0.737 cDC L2
ENSG00000172456 FGGY 421363 sc-eQTL 6.62e-02 -0.184 0.0995 0.737 cMono_IL1B L2
ENSG00000177606 JUN 933954 sc-eQTL 6.59e-01 0.0325 0.0737 0.737 cMono_IL1B L2
ENSG00000172456 FGGY 421363 sc-eQTL 1.53e-01 0.148 0.104 0.737 cMono_S100A L2
ENSG00000177606 JUN 933954 sc-eQTL 9.47e-01 -0.00568 0.0852 0.737 cMono_S100A L2
ENSG00000134709 HOOK1 -96785 sc-eQTL 4.31e-01 0.0837 0.106 0.709 gdT L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.95e-01 0.0301 0.116 0.709 gdT L2
ENSG00000177606 JUN 933954 sc-eQTL 7.49e-02 -0.143 0.0796 0.709 gdT L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.17e-01 0.12 0.0966 0.731 intMono L2
ENSG00000177606 JUN 933954 sc-eQTL 9.24e-01 0.00811 0.085 0.731 intMono L2
ENSG00000172456 FGGY 421363 sc-eQTL 7.45e-01 -0.0319 0.0981 0.731 ncMono L2
ENSG00000177606 JUN 933954 sc-eQTL 8.32e-01 0.017 0.08 0.731 ncMono L2
ENSG00000172456 FGGY 421363 sc-eQTL 2.43e-01 -0.118 0.101 0.732 pDC L2
ENSG00000177606 JUN 933954 sc-eQTL 5.01e-01 -0.0657 0.0974 0.732 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -96785 sc-eQTL 2.04e-01 0.115 0.0899 0.737 B_Memory LOneK1K
ENSG00000172456 FGGY 421363 sc-eQTL 2.28e-01 -0.113 0.0938 0.737 B_Memory LOneK1K
ENSG00000177606 JUN 933954 sc-eQTL 6.34e-01 -0.0311 0.0653 0.737 B_Memory LOneK1K
ENSG00000237352 LINC01358 784358 sc-eQTL 6.20e-01 0.0478 0.0963 0.737 B_Memory LOneK1K
ENSG00000134709 HOOK1 -96785 sc-eQTL 4.31e-01 -0.0757 0.0959 0.737 B_Naive LOneK1K
ENSG00000172456 FGGY 421363 sc-eQTL 4.36e-01 0.0794 0.102 0.737 B_Naive LOneK1K
ENSG00000177606 JUN 933954 sc-eQTL 9.72e-01 -0.00228 0.064 0.737 B_Naive LOneK1K
ENSG00000237352 LINC01358 784358 sc-eQTL 6.81e-01 0.0392 0.095 0.737 B_Naive LOneK1K
ENSG00000172456 FGGY 421363 sc-eQTL 5.99e-01 -0.0538 0.102 0.737 CD14_Mono LOneK1K
ENSG00000177606 JUN 933954 sc-eQTL 9.55e-01 -0.00419 0.0735 0.737 CD14_Mono LOneK1K
ENSG00000172456 FGGY 421363 sc-eQTL 5.61e-01 0.0606 0.104 0.739 CD16_Mono LOneK1K
ENSG00000177606 JUN 933954 sc-eQTL 7.56e-01 0.0239 0.0767 0.739 CD16_Mono LOneK1K
ENSG00000172456 FGGY 421363 sc-eQTL 3.80e-01 0.089 0.101 0.741 NK_CD56dim LOneK1K
ENSG00000177606 JUN 933954 sc-eQTL 2.11e-02 -0.145 0.0623 0.741 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000177606 JUN 933674 eQTL 0.0469 -0.0406 0.0204 0.0 0.0 0.23

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina