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Genes within 1Mb (chr1:59680924:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.57e-01 0.0877 0.095 0.722 B L1
ENSG00000162601 MYSM1 980847 sc-eQTL 4.02e-01 -0.0622 0.0741 0.722 B L1
ENSG00000172456 FGGY 384286 sc-eQTL 1.35e-01 0.155 0.103 0.722 B L1
ENSG00000177606 JUN 896877 sc-eQTL 9.73e-01 -0.00224 0.0666 0.722 B L1
ENSG00000237352 LINC01358 747281 sc-eQTL 8.47e-01 -0.0152 0.0789 0.722 B L1
ENSG00000134709 HOOK1 -133862 sc-eQTL 4.39e-01 -0.0487 0.0628 0.722 CD4T L1
ENSG00000162601 MYSM1 980847 sc-eQTL 5.85e-01 -0.0306 0.0558 0.722 CD4T L1
ENSG00000172456 FGGY 384286 sc-eQTL 4.46e-01 0.082 0.107 0.722 CD4T L1
ENSG00000177606 JUN 896877 sc-eQTL 2.79e-01 -0.0689 0.0635 0.722 CD4T L1
ENSG00000134709 HOOK1 -133862 sc-eQTL 1.01e-01 0.1 0.0609 0.722 CD8T L1
ENSG00000162601 MYSM1 980847 sc-eQTL 9.81e-01 -0.00169 0.0711 0.722 CD8T L1
ENSG00000172456 FGGY 384286 sc-eQTL 5.42e-01 0.0671 0.11 0.722 CD8T L1
ENSG00000177606 JUN 896877 sc-eQTL 4.05e-01 -0.0503 0.0603 0.722 CD8T L1
ENSG00000162601 MYSM1 980847 sc-eQTL 9.26e-01 -0.00998 0.107 0.725 DC L1
ENSG00000172456 FGGY 384286 sc-eQTL 4.37e-01 -0.0769 0.0986 0.725 DC L1
ENSG00000177606 JUN 896877 sc-eQTL 6.38e-01 0.0435 0.0923 0.725 DC L1
ENSG00000162601 MYSM1 980847 sc-eQTL 5.56e-01 0.0492 0.0835 0.722 Mono L1
ENSG00000172456 FGGY 384286 sc-eQTL 6.46e-01 0.0503 0.11 0.722 Mono L1
ENSG00000177606 JUN 896877 sc-eQTL 9.20e-01 -0.00738 0.0738 0.722 Mono L1
ENSG00000162601 MYSM1 980847 sc-eQTL 2.82e-02 0.158 0.0715 0.721 NK L1
ENSG00000172456 FGGY 384286 sc-eQTL 9.23e-01 -0.0102 0.105 0.721 NK L1
ENSG00000177606 JUN 896877 sc-eQTL 9.37e-01 0.00513 0.0652 0.721 NK L1
ENSG00000134709 HOOK1 -133862 sc-eQTL 2.88e-01 -0.0981 0.092 0.722 Other_T L1
ENSG00000162601 MYSM1 980847 sc-eQTL 6.74e-01 -0.0426 0.101 0.722 Other_T L1
ENSG00000172456 FGGY 384286 sc-eQTL 4.75e-01 0.0783 0.109 0.722 Other_T L1
ENSG00000177606 JUN 896877 sc-eQTL 6.53e-01 -0.0264 0.0587 0.722 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -133862 sc-eQTL 1.29e-01 -0.144 0.0941 0.722 B_Activated L2
ENSG00000162601 MYSM1 980847 sc-eQTL 4.88e-01 -0.0842 0.121 0.722 B_Activated L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.17e-01 0.174 0.11 0.722 B_Activated L2
ENSG00000177606 JUN 896877 sc-eQTL 9.94e-01 -0.000817 0.101 0.722 B_Activated L2
ENSG00000237352 LINC01358 747281 sc-eQTL 7.77e-01 0.0292 0.103 0.722 B_Activated L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 5.65e-01 0.0634 0.11 0.721 B_Intermediate L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.90e-01 -0.0852 0.0988 0.721 B_Intermediate L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.92e-01 0.138 0.106 0.721 B_Intermediate L2
ENSG00000177606 JUN 896877 sc-eQTL 8.31e-01 0.0151 0.0707 0.721 B_Intermediate L2
ENSG00000237352 LINC01358 747281 sc-eQTL 8.78e-01 0.0146 0.0951 0.721 B_Intermediate L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 1.68e-01 0.134 0.0968 0.724 B_Memory L2
ENSG00000162601 MYSM1 980847 sc-eQTL 1.26e-01 0.164 0.107 0.724 B_Memory L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.61e-01 0.034 0.112 0.724 B_Memory L2
ENSG00000177606 JUN 896877 sc-eQTL 9.98e-01 0.000226 0.0801 0.724 B_Memory L2
ENSG00000237352 LINC01358 747281 sc-eQTL 1.09e-01 0.155 0.0961 0.724 B_Memory L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 6.01e-01 -0.0548 0.105 0.722 B_Naive1 L2
ENSG00000162601 MYSM1 980847 sc-eQTL 2.78e-01 -0.0854 0.0785 0.722 B_Naive1 L2
ENSG00000172456 FGGY 384286 sc-eQTL 2.61e-01 0.128 0.113 0.722 B_Naive1 L2
ENSG00000177606 JUN 896877 sc-eQTL 8.76e-02 -0.111 0.0648 0.722 B_Naive1 L2
ENSG00000237352 LINC01358 747281 sc-eQTL 5.09e-01 0.0616 0.0932 0.722 B_Naive1 L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.37e-01 0.101 0.105 0.725 B_Naive2 L2
ENSG00000162601 MYSM1 980847 sc-eQTL 9.61e-01 -0.00476 0.0977 0.725 B_Naive2 L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.14e-01 0.169 0.106 0.725 B_Naive2 L2
ENSG00000177606 JUN 896877 sc-eQTL 7.43e-01 -0.0245 0.0747 0.725 B_Naive2 L2
ENSG00000237352 LINC01358 747281 sc-eQTL 3.52e-01 -0.0823 0.0883 0.725 B_Naive2 L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.19e-01 -0.0947 0.0948 0.716 CD4_CTL L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.72e-01 -0.102 0.114 0.716 CD4_CTL L2
ENSG00000172456 FGGY 384286 sc-eQTL 8.03e-01 0.0254 0.102 0.716 CD4_CTL L2
ENSG00000177606 JUN 896877 sc-eQTL 3.95e-01 -0.0777 0.0911 0.716 CD4_CTL L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.38e-01 -0.0722 0.0751 0.722 CD4_Naive L2
ENSG00000162601 MYSM1 980847 sc-eQTL 9.59e-02 -0.107 0.0643 0.722 CD4_Naive L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.51e-01 0.157 0.109 0.722 CD4_Naive L2
ENSG00000177606 JUN 896877 sc-eQTL 4.13e-01 -0.051 0.0622 0.722 CD4_Naive L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 9.09e-01 -0.00958 0.0835 0.722 CD4_TCM L2
ENSG00000162601 MYSM1 980847 sc-eQTL 4.89e-01 0.0531 0.0766 0.722 CD4_TCM L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.89e-01 -0.0294 0.11 0.722 CD4_TCM L2
ENSG00000177606 JUN 896877 sc-eQTL 8.00e-01 -0.018 0.071 0.722 CD4_TCM L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.65e-01 -0.1 0.11 0.722 CD4_TEM L2
ENSG00000162601 MYSM1 980847 sc-eQTL 7.72e-01 -0.0282 0.0974 0.722 CD4_TEM L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.34e-01 0.0361 0.106 0.722 CD4_TEM L2
ENSG00000177606 JUN 896877 sc-eQTL 4.74e-01 -0.0582 0.0811 0.722 CD4_TEM L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 8.40e-01 -0.0199 0.0983 0.722 CD8_CTL L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.04e-01 -0.088 0.0855 0.722 CD8_CTL L2
ENSG00000172456 FGGY 384286 sc-eQTL 2.43e-01 0.129 0.11 0.722 CD8_CTL L2
ENSG00000177606 JUN 896877 sc-eQTL 1.79e-01 -0.0978 0.0725 0.722 CD8_CTL L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 9.72e-01 0.00325 0.0915 0.722 CD8_Naive L2
ENSG00000162601 MYSM1 980847 sc-eQTL 6.09e-01 0.0453 0.0884 0.722 CD8_Naive L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.70e-02 -0.195 0.11 0.722 CD8_Naive L2
ENSG00000177606 JUN 896877 sc-eQTL 3.29e-01 -0.074 0.0756 0.722 CD8_Naive L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 6.46e-01 0.0483 0.105 0.722 CD8_TCM L2
ENSG00000162601 MYSM1 980847 sc-eQTL 7.40e-01 -0.0387 0.117 0.722 CD8_TCM L2
ENSG00000172456 FGGY 384286 sc-eQTL 4.64e-01 0.0824 0.112 0.722 CD8_TCM L2
ENSG00000177606 JUN 896877 sc-eQTL 2.56e-01 -0.0937 0.0822 0.722 CD8_TCM L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 6.35e-01 0.0453 0.0954 0.715 CD8_TEM L2
ENSG00000162601 MYSM1 980847 sc-eQTL 2.31e-01 0.133 0.111 0.715 CD8_TEM L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.79e-01 0.148 0.109 0.715 CD8_TEM L2
ENSG00000177606 JUN 896877 sc-eQTL 2.81e-01 -0.0865 0.0799 0.715 CD8_TEM L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 8.89e-01 -0.0139 0.0994 0.721 MAIT L2
ENSG00000162601 MYSM1 980847 sc-eQTL 7.40e-01 -0.0369 0.111 0.721 MAIT L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.08e-01 0.0402 0.107 0.721 MAIT L2
ENSG00000177606 JUN 896877 sc-eQTL 1.95e-01 -0.0984 0.0756 0.721 MAIT L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.26e-01 -0.105 0.106 0.727 NK_CD56bright L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.72e-01 -0.0314 0.108 0.727 NK_CD56bright L2
ENSG00000177606 JUN 896877 sc-eQTL 6.71e-01 -0.0347 0.0816 0.727 NK_CD56bright L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.18e-03 0.246 0.0823 0.72 NK_CD56dim L2
ENSG00000172456 FGGY 384286 sc-eQTL 2.44e-01 0.13 0.111 0.72 NK_CD56dim L2
ENSG00000177606 JUN 896877 sc-eQTL 6.72e-01 -0.0311 0.0734 0.72 NK_CD56dim L2
ENSG00000162601 MYSM1 980847 sc-eQTL 3.01e-01 0.113 0.109 0.724 NK_HLA L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.92e-01 0.0289 0.109 0.724 NK_HLA L2
ENSG00000177606 JUN 896877 sc-eQTL 3.17e-01 0.0992 0.099 0.724 NK_HLA L2
ENSG00000162601 MYSM1 980847 sc-eQTL 6.67e-01 -0.0391 0.0907 0.72 NK_cytokine L2
ENSG00000172456 FGGY 384286 sc-eQTL 1.55e-01 -0.148 0.104 0.72 NK_cytokine L2
ENSG00000177606 JUN 896877 sc-eQTL 6.58e-01 -0.0313 0.0708 0.72 NK_cytokine L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 5.57e-01 0.0711 0.121 0.744 PB L2
ENSG00000162601 MYSM1 980847 sc-eQTL 1.36e-02 -0.288 0.115 0.744 PB L2
ENSG00000172456 FGGY 384286 sc-eQTL 3.92e-01 -0.102 0.118 0.744 PB L2
ENSG00000177606 JUN 896877 sc-eQTL 3.43e-01 0.117 0.123 0.744 PB L2
ENSG00000237352 LINC01358 747281 sc-eQTL 2.45e-01 -0.117 0.1 0.744 PB L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 7.24e-01 -0.0328 0.0926 0.724 Pro_T L2
ENSG00000162601 MYSM1 980847 sc-eQTL 9.64e-01 0.00515 0.113 0.724 Pro_T L2
ENSG00000172456 FGGY 384286 sc-eQTL 8.08e-01 -0.0262 0.108 0.724 Pro_T L2
ENSG00000177606 JUN 896877 sc-eQTL 7.26e-01 -0.0258 0.0733 0.724 Pro_T L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 1.01e-01 -0.152 0.0923 0.722 Treg L2
ENSG00000162601 MYSM1 980847 sc-eQTL 9.84e-01 0.00204 0.103 0.722 Treg L2
ENSG00000172456 FGGY 384286 sc-eQTL 3.12e-01 0.108 0.106 0.722 Treg L2
ENSG00000177606 JUN 896877 sc-eQTL 2.96e-01 -0.0612 0.0584 0.722 Treg L2
ENSG00000162601 MYSM1 980847 sc-eQTL 1.13e-01 0.178 0.112 0.727 cDC L2
ENSG00000172456 FGGY 384286 sc-eQTL 4.55e-01 -0.0756 0.101 0.727 cDC L2
ENSG00000177606 JUN 896877 sc-eQTL 2.37e-01 -0.107 0.0901 0.727 cDC L2
ENSG00000162601 MYSM1 980847 sc-eQTL 9.79e-01 -0.0024 0.0894 0.722 cMono_IL1B L2
ENSG00000172456 FGGY 384286 sc-eQTL 4.03e-01 0.0887 0.106 0.722 cMono_IL1B L2
ENSG00000177606 JUN 896877 sc-eQTL 5.48e-01 -0.0469 0.0779 0.722 cMono_IL1B L2
ENSG00000162601 MYSM1 980847 sc-eQTL 2.95e-01 0.102 0.0971 0.722 cMono_S100A L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.49e-01 -0.0349 0.109 0.722 cMono_S100A L2
ENSG00000177606 JUN 896877 sc-eQTL 7.27e-01 0.0311 0.0889 0.722 cMono_S100A L2
ENSG00000134709 HOOK1 -133862 sc-eQTL 7.46e-01 0.0367 0.113 0.718 gdT L2
ENSG00000162601 MYSM1 980847 sc-eQTL 6.03e-01 0.0712 0.137 0.718 gdT L2
ENSG00000172456 FGGY 384286 sc-eQTL 9.37e-01 -0.00966 0.123 0.718 gdT L2
ENSG00000177606 JUN 896877 sc-eQTL 6.42e-01 -0.0398 0.0855 0.718 gdT L2
ENSG00000162601 MYSM1 980847 sc-eQTL 7.81e-01 0.0317 0.114 0.731 intMono L2
ENSG00000172456 FGGY 384286 sc-eQTL 6.65e-01 -0.0433 0.0999 0.731 intMono L2
ENSG00000177606 JUN 896877 sc-eQTL 3.29e-01 -0.0855 0.0874 0.731 intMono L2
ENSG00000162601 MYSM1 980847 sc-eQTL 4.29e-01 -0.0869 0.11 0.724 ncMono L2
ENSG00000172456 FGGY 384286 sc-eQTL 7.73e-01 0.0296 0.102 0.724 ncMono L2
ENSG00000177606 JUN 896877 sc-eQTL 8.99e-01 -0.0106 0.0833 0.724 ncMono L2
ENSG00000162601 MYSM1 980847 sc-eQTL 4.71e-02 -0.226 0.113 0.723 pDC L2
ENSG00000172456 FGGY 384286 sc-eQTL 6.18e-01 -0.0509 0.102 0.723 pDC L2
ENSG00000177606 JUN 896877 sc-eQTL 7.02e-01 0.0377 0.0983 0.723 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -133862 sc-eQTL 3.92e-01 0.0821 0.0957 0.722 B_Memory LOneK1K
ENSG00000162601 MYSM1 980847 sc-eQTL 5.94e-01 0.0478 0.0896 0.722 B_Memory LOneK1K
ENSG00000172456 FGGY 384286 sc-eQTL 3.09e-01 0.102 0.0998 0.722 B_Memory LOneK1K
ENSG00000177606 JUN 896877 sc-eQTL 5.47e-01 -0.0418 0.0693 0.722 B_Memory LOneK1K
ENSG00000237352 LINC01358 747281 sc-eQTL 9.09e-02 0.173 0.102 0.722 B_Memory LOneK1K
ENSG00000134709 HOOK1 -133862 sc-eQTL 7.91e-01 0.0269 0.101 0.722 B_Naive LOneK1K
ENSG00000162601 MYSM1 980847 sc-eQTL 5.50e-01 -0.0481 0.0805 0.722 B_Naive LOneK1K
ENSG00000172456 FGGY 384286 sc-eQTL 5.81e-02 0.203 0.107 0.722 B_Naive LOneK1K
ENSG00000177606 JUN 896877 sc-eQTL 6.76e-01 -0.0283 0.0676 0.722 B_Naive LOneK1K
ENSG00000237352 LINC01358 747281 sc-eQTL 6.85e-01 0.0409 0.1 0.722 B_Naive LOneK1K
ENSG00000162601 MYSM1 980847 sc-eQTL 5.80e-01 0.0451 0.0814 0.722 CD14_Mono LOneK1K
ENSG00000172456 FGGY 384286 sc-eQTL 7.17e-01 0.0394 0.109 0.722 CD14_Mono LOneK1K
ENSG00000177606 JUN 896877 sc-eQTL 7.52e-01 0.0248 0.0782 0.722 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 980847 sc-eQTL 8.58e-01 -0.0184 0.103 0.722 CD16_Mono LOneK1K
ENSG00000172456 FGGY 384286 sc-eQTL 7.90e-01 -0.0287 0.108 0.722 CD16_Mono LOneK1K
ENSG00000177606 JUN 896877 sc-eQTL 6.63e-01 -0.0346 0.0791 0.722 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 980847 sc-eQTL 1.32e-01 0.111 0.0737 0.72 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 384286 sc-eQTL 8.89e-01 -0.015 0.107 0.72 NK_CD56dim LOneK1K
ENSG00000177606 JUN 896877 sc-eQTL 8.68e-01 0.011 0.0665 0.72 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162598 C1orf87 -392846 eQTL 0.0135 0.0811 0.0327 0.00186 0.0 0.263
ENSG00000172456 FGGY 384286 eQTL 0.000753 -0.09 0.0266 0.00218 0.00101 0.263

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172456 FGGY 384286 1.35e-06 1.33e-06 2.65e-07 1.27e-06 2.48e-07 6.58e-07 1.49e-06 3.51e-07 1.51e-06 6.18e-07 2.07e-06 9.21e-07 2.66e-06 4.19e-07 3.88e-07 9.92e-07 9.8e-07 9.65e-07 8.41e-07 5.21e-07 7.11e-07 1.92e-06 9.18e-07 6.35e-07 2.41e-06 6.01e-07 9.36e-07 9.6e-07 1.38e-06 1.19e-06 8e-07 4.87e-08 2.55e-07 6.19e-07 6.99e-07 4.6e-07 6.97e-07 1.92e-07 4.63e-07 2.42e-07 2.59e-07 2.66e-06 3.52e-07 1.32e-07 1.73e-07 1.46e-07 2.29e-07 7.69e-08 1.34e-07