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Genes within 1Mb (chr1:59677420:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -137366 sc-eQTL 6.00e-01 -0.0556 0.106 0.803 B L1
ENSG00000162601 MYSM1 977343 sc-eQTL 2.70e-01 0.091 0.0823 0.803 B L1
ENSG00000172456 FGGY 380782 sc-eQTL 5.28e-01 -0.0728 0.115 0.803 B L1
ENSG00000177606 JUN 893373 sc-eQTL 2.89e-01 -0.0785 0.0738 0.803 B L1
ENSG00000237352 LINC01358 743777 sc-eQTL 5.87e-01 0.0477 0.0877 0.803 B L1
ENSG00000134709 HOOK1 -137366 sc-eQTL 8.94e-01 0.00909 0.068 0.803 CD4T L1
ENSG00000162601 MYSM1 977343 sc-eQTL 8.92e-01 -0.00824 0.0604 0.803 CD4T L1
ENSG00000172456 FGGY 380782 sc-eQTL 7.09e-01 0.0435 0.116 0.803 CD4T L1
ENSG00000177606 JUN 893373 sc-eQTL 9.15e-01 -0.00737 0.0689 0.803 CD4T L1
ENSG00000134709 HOOK1 -137366 sc-eQTL 3.06e-01 0.0673 0.0656 0.803 CD8T L1
ENSG00000162601 MYSM1 977343 sc-eQTL 2.23e-02 0.174 0.0754 0.803 CD8T L1
ENSG00000172456 FGGY 380782 sc-eQTL 4.11e-01 0.0973 0.118 0.803 CD8T L1
ENSG00000177606 JUN 893373 sc-eQTL 5.49e-01 -0.0389 0.0648 0.803 CD8T L1
ENSG00000162601 MYSM1 977343 sc-eQTL 1.60e-01 0.173 0.123 0.809 DC L1
ENSG00000172456 FGGY 380782 sc-eQTL 2.34e-02 -0.256 0.112 0.809 DC L1
ENSG00000177606 JUN 893373 sc-eQTL 3.84e-01 0.0924 0.106 0.809 DC L1
ENSG00000162601 MYSM1 977343 sc-eQTL 6.18e-01 0.0465 0.0929 0.803 Mono L1
ENSG00000172456 FGGY 380782 sc-eQTL 5.73e-01 -0.0688 0.122 0.803 Mono L1
ENSG00000177606 JUN 893373 sc-eQTL 2.39e-01 0.0966 0.0818 0.803 Mono L1
ENSG00000162601 MYSM1 977343 sc-eQTL 1.83e-02 0.186 0.0781 0.803 NK L1
ENSG00000172456 FGGY 380782 sc-eQTL 7.34e-01 0.0392 0.115 0.803 NK L1
ENSG00000177606 JUN 893373 sc-eQTL 6.45e-01 0.0329 0.0714 0.803 NK L1
ENSG00000134709 HOOK1 -137366 sc-eQTL 9.83e-01 0.00217 0.102 0.803 Other_T L1
ENSG00000162601 MYSM1 977343 sc-eQTL 4.33e-01 0.0875 0.111 0.803 Other_T L1
ENSG00000172456 FGGY 380782 sc-eQTL 8.66e-01 -0.0204 0.121 0.803 Other_T L1
ENSG00000177606 JUN 893373 sc-eQTL 8.00e-02 0.113 0.0641 0.803 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -137366 sc-eQTL 3.36e-02 -0.214 0.1 0.804 B_Activated L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.47e-01 -0.0597 0.13 0.804 B_Activated L2
ENSG00000172456 FGGY 380782 sc-eQTL 6.12e-01 0.0604 0.119 0.804 B_Activated L2
ENSG00000177606 JUN 893373 sc-eQTL 7.30e-01 0.0375 0.109 0.804 B_Activated L2
ENSG00000237352 LINC01358 743777 sc-eQTL 9.29e-01 -0.0099 0.11 0.804 B_Activated L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 4.30e-01 -0.0949 0.12 0.803 B_Intermediate L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.91e-01 -0.043 0.108 0.803 B_Intermediate L2
ENSG00000172456 FGGY 380782 sc-eQTL 7.47e-01 0.0374 0.116 0.803 B_Intermediate L2
ENSG00000177606 JUN 893373 sc-eQTL 3.51e-01 0.072 0.077 0.803 B_Intermediate L2
ENSG00000237352 LINC01358 743777 sc-eQTL 7.88e-01 -0.0279 0.104 0.803 B_Intermediate L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 7.61e-01 -0.0326 0.107 0.804 B_Memory L2
ENSG00000162601 MYSM1 977343 sc-eQTL 8.27e-02 0.205 0.117 0.804 B_Memory L2
ENSG00000172456 FGGY 380782 sc-eQTL 3.84e-02 -0.254 0.122 0.804 B_Memory L2
ENSG00000177606 JUN 893373 sc-eQTL 8.19e-01 -0.0202 0.0882 0.804 B_Memory L2
ENSG00000237352 LINC01358 743777 sc-eQTL 1.15e-01 0.167 0.106 0.804 B_Memory L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 7.80e-01 -0.0322 0.115 0.803 B_Naive1 L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.54e-01 -0.0387 0.0864 0.803 B_Naive1 L2
ENSG00000172456 FGGY 380782 sc-eQTL 1.39e-01 0.184 0.124 0.803 B_Naive1 L2
ENSG00000177606 JUN 893373 sc-eQTL 4.14e-02 -0.146 0.071 0.803 B_Naive1 L2
ENSG00000237352 LINC01358 743777 sc-eQTL 7.14e-01 -0.0376 0.102 0.803 B_Naive1 L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 2.72e-01 0.128 0.116 0.805 B_Naive2 L2
ENSG00000162601 MYSM1 977343 sc-eQTL 1.94e-02 0.252 0.107 0.805 B_Naive2 L2
ENSG00000172456 FGGY 380782 sc-eQTL 4.40e-01 -0.0918 0.119 0.805 B_Naive2 L2
ENSG00000177606 JUN 893373 sc-eQTL 2.89e-02 -0.18 0.082 0.805 B_Naive2 L2
ENSG00000237352 LINC01358 743777 sc-eQTL 6.36e-01 0.0465 0.0982 0.805 B_Naive2 L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 7.97e-01 0.0271 0.105 0.811 CD4_CTL L2
ENSG00000162601 MYSM1 977343 sc-eQTL 1.36e-01 -0.189 0.126 0.811 CD4_CTL L2
ENSG00000172456 FGGY 380782 sc-eQTL 3.53e-01 -0.105 0.113 0.811 CD4_CTL L2
ENSG00000177606 JUN 893373 sc-eQTL 3.90e-01 0.0869 0.101 0.811 CD4_CTL L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 9.47e-01 0.00545 0.0819 0.803 CD4_Naive L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.03e-01 -0.0367 0.0703 0.803 CD4_Naive L2
ENSG00000172456 FGGY 380782 sc-eQTL 6.63e-01 0.0521 0.119 0.803 CD4_Naive L2
ENSG00000177606 JUN 893373 sc-eQTL 6.67e-01 0.0291 0.0677 0.803 CD4_Naive L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 7.85e-01 0.0248 0.0906 0.803 CD4_TCM L2
ENSG00000162601 MYSM1 977343 sc-eQTL 5.34e-01 0.0517 0.083 0.803 CD4_TCM L2
ENSG00000172456 FGGY 380782 sc-eQTL 9.30e-01 0.0105 0.119 0.803 CD4_TCM L2
ENSG00000177606 JUN 893373 sc-eQTL 7.03e-01 0.0294 0.0769 0.803 CD4_TCM L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 4.41e-01 0.0929 0.12 0.803 CD4_TEM L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.05e-01 -0.055 0.106 0.803 CD4_TEM L2
ENSG00000172456 FGGY 380782 sc-eQTL 1.68e-01 0.159 0.115 0.803 CD4_TEM L2
ENSG00000177606 JUN 893373 sc-eQTL 2.75e-01 0.0964 0.0882 0.803 CD4_TEM L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 7.63e-01 -0.0322 0.107 0.803 CD8_CTL L2
ENSG00000162601 MYSM1 977343 sc-eQTL 3.22e-02 0.198 0.092 0.803 CD8_CTL L2
ENSG00000172456 FGGY 380782 sc-eQTL 7.33e-02 0.214 0.119 0.803 CD8_CTL L2
ENSG00000177606 JUN 893373 sc-eQTL 2.40e-01 0.0927 0.0788 0.803 CD8_CTL L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 8.80e-01 -0.0152 0.101 0.803 CD8_Naive L2
ENSG00000162601 MYSM1 977343 sc-eQTL 9.39e-01 0.00748 0.0977 0.803 CD8_Naive L2
ENSG00000172456 FGGY 380782 sc-eQTL 3.48e-01 -0.115 0.122 0.803 CD8_Naive L2
ENSG00000177606 JUN 893373 sc-eQTL 4.37e-01 -0.0651 0.0836 0.803 CD8_Naive L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 1.20e-01 0.175 0.112 0.803 CD8_TCM L2
ENSG00000162601 MYSM1 977343 sc-eQTL 7.62e-01 0.0378 0.125 0.803 CD8_TCM L2
ENSG00000172456 FGGY 380782 sc-eQTL 8.53e-01 0.0224 0.12 0.803 CD8_TCM L2
ENSG00000177606 JUN 893373 sc-eQTL 4.28e-01 0.07 0.0881 0.803 CD8_TCM L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 1.06e-01 0.167 0.103 0.801 CD8_TEM L2
ENSG00000162601 MYSM1 977343 sc-eQTL 7.64e-02 0.214 0.12 0.801 CD8_TEM L2
ENSG00000172456 FGGY 380782 sc-eQTL 8.07e-01 0.0292 0.119 0.801 CD8_TEM L2
ENSG00000177606 JUN 893373 sc-eQTL 4.91e-01 -0.0601 0.087 0.801 CD8_TEM L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 2.02e-01 0.141 0.11 0.805 MAIT L2
ENSG00000162601 MYSM1 977343 sc-eQTL 8.45e-01 0.0241 0.123 0.805 MAIT L2
ENSG00000172456 FGGY 380782 sc-eQTL 8.83e-01 0.0176 0.12 0.805 MAIT L2
ENSG00000177606 JUN 893373 sc-eQTL 6.10e-01 0.0431 0.0845 0.805 MAIT L2
ENSG00000162601 MYSM1 977343 sc-eQTL 7.74e-01 0.033 0.115 0.804 NK_CD56bright L2
ENSG00000172456 FGGY 380782 sc-eQTL 1.45e-01 0.17 0.116 0.804 NK_CD56bright L2
ENSG00000177606 JUN 893373 sc-eQTL 2.96e-01 0.0916 0.0875 0.804 NK_CD56bright L2
ENSG00000162601 MYSM1 977343 sc-eQTL 4.95e-02 0.178 0.09 0.802 NK_CD56dim L2
ENSG00000172456 FGGY 380782 sc-eQTL 4.82e-01 0.0848 0.12 0.802 NK_CD56dim L2
ENSG00000177606 JUN 893373 sc-eQTL 3.92e-01 0.0679 0.0793 0.802 NK_CD56dim L2
ENSG00000162601 MYSM1 977343 sc-eQTL 5.82e-02 0.219 0.115 0.801 NK_HLA L2
ENSG00000172456 FGGY 380782 sc-eQTL 8.72e-01 -0.0186 0.116 0.801 NK_HLA L2
ENSG00000177606 JUN 893373 sc-eQTL 3.03e-01 0.108 0.105 0.801 NK_HLA L2
ENSG00000162601 MYSM1 977343 sc-eQTL 2.74e-01 0.108 0.0986 0.802 NK_cytokine L2
ENSG00000172456 FGGY 380782 sc-eQTL 6.53e-01 -0.0511 0.114 0.802 NK_cytokine L2
ENSG00000177606 JUN 893373 sc-eQTL 4.55e-01 0.0577 0.0771 0.802 NK_cytokine L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 6.24e-01 0.0663 0.135 0.793 PB L2
ENSG00000162601 MYSM1 977343 sc-eQTL 1.63e-01 -0.184 0.131 0.793 PB L2
ENSG00000172456 FGGY 380782 sc-eQTL 3.98e-01 -0.112 0.132 0.793 PB L2
ENSG00000177606 JUN 893373 sc-eQTL 2.56e-02 0.304 0.134 0.793 PB L2
ENSG00000237352 LINC01358 743777 sc-eQTL 3.84e-01 -0.0981 0.112 0.793 PB L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 4.88e-01 -0.0707 0.102 0.804 Pro_T L2
ENSG00000162601 MYSM1 977343 sc-eQTL 7.03e-01 0.0478 0.125 0.804 Pro_T L2
ENSG00000172456 FGGY 380782 sc-eQTL 6.27e-01 0.0575 0.118 0.804 Pro_T L2
ENSG00000177606 JUN 893373 sc-eQTL 2.05e-01 0.102 0.0804 0.804 Pro_T L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 5.51e-01 -0.0605 0.101 0.803 Treg L2
ENSG00000162601 MYSM1 977343 sc-eQTL 8.57e-01 0.0203 0.112 0.803 Treg L2
ENSG00000172456 FGGY 380782 sc-eQTL 5.99e-01 -0.0615 0.117 0.803 Treg L2
ENSG00000177606 JUN 893373 sc-eQTL 4.28e-01 -0.0508 0.0639 0.803 Treg L2
ENSG00000162601 MYSM1 977343 sc-eQTL 4.51e-01 0.096 0.127 0.81 cDC L2
ENSG00000172456 FGGY 380782 sc-eQTL 1.32e-01 -0.172 0.113 0.81 cDC L2
ENSG00000177606 JUN 893373 sc-eQTL 9.44e-01 0.00725 0.102 0.81 cDC L2
ENSG00000162601 MYSM1 977343 sc-eQTL 3.74e-01 0.0875 0.0981 0.803 cMono_IL1B L2
ENSG00000172456 FGGY 380782 sc-eQTL 8.46e-01 -0.0227 0.117 0.803 cMono_IL1B L2
ENSG00000177606 JUN 893373 sc-eQTL 3.63e-01 0.078 0.0856 0.803 cMono_IL1B L2
ENSG00000162601 MYSM1 977343 sc-eQTL 2.85e-01 0.116 0.108 0.803 cMono_S100A L2
ENSG00000172456 FGGY 380782 sc-eQTL 7.39e-01 -0.0403 0.121 0.803 cMono_S100A L2
ENSG00000177606 JUN 893373 sc-eQTL 1.84e-01 0.131 0.0984 0.803 cMono_S100A L2
ENSG00000134709 HOOK1 -137366 sc-eQTL 8.16e-01 0.0285 0.123 0.803 gdT L2
ENSG00000162601 MYSM1 977343 sc-eQTL 7.08e-01 0.0558 0.149 0.803 gdT L2
ENSG00000172456 FGGY 380782 sc-eQTL 9.78e-01 -0.00375 0.134 0.803 gdT L2
ENSG00000177606 JUN 893373 sc-eQTL 4.15e-02 0.189 0.0918 0.803 gdT L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.31e-01 0.0627 0.13 0.807 intMono L2
ENSG00000172456 FGGY 380782 sc-eQTL 2.88e-01 -0.121 0.114 0.807 intMono L2
ENSG00000177606 JUN 893373 sc-eQTL 5.77e-01 0.056 0.1 0.807 intMono L2
ENSG00000162601 MYSM1 977343 sc-eQTL 6.56e-01 -0.0566 0.127 0.805 ncMono L2
ENSG00000172456 FGGY 380782 sc-eQTL 7.37e-01 -0.0396 0.118 0.805 ncMono L2
ENSG00000177606 JUN 893373 sc-eQTL 5.75e-01 0.054 0.0961 0.805 ncMono L2
ENSG00000162601 MYSM1 977343 sc-eQTL 8.08e-01 0.033 0.135 0.808 pDC L2
ENSG00000172456 FGGY 380782 sc-eQTL 2.14e-02 -0.276 0.119 0.808 pDC L2
ENSG00000177606 JUN 893373 sc-eQTL 4.39e-01 0.0901 0.116 0.808 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -137366 sc-eQTL 1.59e-01 -0.148 0.105 0.803 B_Memory LOneK1K
ENSG00000162601 MYSM1 977343 sc-eQTL 5.13e-01 0.0644 0.0983 0.803 B_Memory LOneK1K
ENSG00000172456 FGGY 380782 sc-eQTL 3.23e-01 -0.108 0.11 0.803 B_Memory LOneK1K
ENSG00000177606 JUN 893373 sc-eQTL 8.32e-01 -0.0162 0.0762 0.803 B_Memory LOneK1K
ENSG00000237352 LINC01358 743777 sc-eQTL 3.81e-01 0.0986 0.112 0.803 B_Memory LOneK1K
ENSG00000134709 HOOK1 -137366 sc-eQTL 9.22e-01 0.0109 0.111 0.803 B_Naive LOneK1K
ENSG00000162601 MYSM1 977343 sc-eQTL 2.45e-01 0.102 0.0877 0.803 B_Naive LOneK1K
ENSG00000172456 FGGY 380782 sc-eQTL 9.71e-01 0.00424 0.118 0.803 B_Naive LOneK1K
ENSG00000177606 JUN 893373 sc-eQTL 1.55e-02 -0.178 0.0729 0.803 B_Naive LOneK1K
ENSG00000237352 LINC01358 743777 sc-eQTL 8.68e-01 0.0182 0.11 0.803 B_Naive LOneK1K
ENSG00000162601 MYSM1 977343 sc-eQTL 2.88e-01 0.0943 0.0885 0.803 CD14_Mono LOneK1K
ENSG00000172456 FGGY 380782 sc-eQTL 8.31e-01 -0.0252 0.118 0.803 CD14_Mono LOneK1K
ENSG00000177606 JUN 893373 sc-eQTL 1.13e-01 0.135 0.0848 0.803 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 977343 sc-eQTL 3.14e-01 -0.12 0.118 0.806 CD16_Mono LOneK1K
ENSG00000172456 FGGY 380782 sc-eQTL 3.16e-01 -0.124 0.124 0.806 CD16_Mono LOneK1K
ENSG00000177606 JUN 893373 sc-eQTL 5.36e-01 0.0565 0.0912 0.806 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 977343 sc-eQTL 5.49e-02 0.154 0.0799 0.802 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 380782 sc-eQTL 9.46e-01 -0.0079 0.116 0.802 NK_CD56dim LOneK1K
ENSG00000177606 JUN 893373 sc-eQTL 4.61e-01 0.0535 0.0723 0.802 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000134709 HOOK1 -137366 eQTL 0.0433 -0.0387 0.0191 0.00143 0.0 0.196
ENSG00000172456 FGGY 380782 eQTL 2.14e-07 -0.154 0.0294 0.1 0.0841 0.196

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172456 FGGY 380782 6.97e-07 4.93e-07 8.51e-08 3.58e-07 1.11e-07 1.57e-07 5.13e-07 8.37e-08 3.03e-07 2.06e-07 4.39e-07 3.21e-07 6e-07 1.07e-07 1.57e-07 1.75e-07 1.62e-07 3.04e-07 1.51e-07 9.01e-08 1.61e-07 2.96e-07 3.07e-07 1.23e-07 6.39e-07 2.29e-07 1.85e-07 1.86e-07 2.76e-07 3.71e-07 1.95e-07 7.41e-08 5.64e-08 1.19e-07 2.61e-07 5.2e-08 1e-07 7.62e-08 6.29e-08 5.61e-08 6.39e-08 4.16e-07 2.28e-08 1.53e-08 8.43e-08 8.59e-09 7.25e-08 3.2e-09 5.71e-08