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Genes within 1Mb (chr1:59651727:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -163059 sc-eQTL 5.20e-01 0.0794 0.123 0.87 B L1
ENSG00000162601 MYSM1 951650 sc-eQTL 8.67e-01 0.0162 0.0962 0.87 B L1
ENSG00000172456 FGGY 355089 sc-eQTL 5.29e-01 -0.0848 0.134 0.87 B L1
ENSG00000177606 JUN 867680 sc-eQTL 3.12e-01 -0.0872 0.0861 0.87 B L1
ENSG00000237352 LINC01358 718084 sc-eQTL 6.18e-01 0.0511 0.102 0.87 B L1
ENSG00000134709 HOOK1 -163059 sc-eQTL 4.06e-01 -0.0672 0.0807 0.87 CD4T L1
ENSG00000162601 MYSM1 951650 sc-eQTL 5.74e-01 -0.0404 0.0717 0.87 CD4T L1
ENSG00000172456 FGGY 355089 sc-eQTL 7.80e-01 0.0386 0.138 0.87 CD4T L1
ENSG00000177606 JUN 867680 sc-eQTL 2.72e-01 -0.0899 0.0816 0.87 CD4T L1
ENSG00000134709 HOOK1 -163059 sc-eQTL 1.36e-01 0.118 0.0788 0.87 CD8T L1
ENSG00000162601 MYSM1 951650 sc-eQTL 8.39e-01 -0.0187 0.092 0.87 CD8T L1
ENSG00000172456 FGGY 355089 sc-eQTL 6.12e-01 0.0723 0.142 0.87 CD8T L1
ENSG00000177606 JUN 867680 sc-eQTL 2.15e-01 -0.0968 0.0778 0.87 CD8T L1
ENSG00000162601 MYSM1 951650 sc-eQTL 2.61e-01 0.162 0.143 0.876 DC L1
ENSG00000172456 FGGY 355089 sc-eQTL 1.89e-01 -0.174 0.132 0.876 DC L1
ENSG00000177606 JUN 867680 sc-eQTL 2.54e-01 0.141 0.124 0.876 DC L1
ENSG00000162601 MYSM1 951650 sc-eQTL 5.17e-01 0.0713 0.11 0.87 Mono L1
ENSG00000172456 FGGY 355089 sc-eQTL 5.44e-01 -0.0875 0.144 0.87 Mono L1
ENSG00000177606 JUN 867680 sc-eQTL 3.30e-01 0.0945 0.0969 0.87 Mono L1
ENSG00000162601 MYSM1 951650 sc-eQTL 1.01e-02 0.24 0.0925 0.869 NK L1
ENSG00000172456 FGGY 355089 sc-eQTL 8.19e-01 -0.0313 0.137 0.869 NK L1
ENSG00000177606 JUN 867680 sc-eQTL 5.23e-01 -0.0542 0.0847 0.869 NK L1
ENSG00000134709 HOOK1 -163059 sc-eQTL 6.64e-01 0.0522 0.12 0.87 Other_T L1
ENSG00000162601 MYSM1 951650 sc-eQTL 9.96e-01 0.000676 0.132 0.87 Other_T L1
ENSG00000172456 FGGY 355089 sc-eQTL 7.97e-01 0.0368 0.142 0.87 Other_T L1
ENSG00000177606 JUN 867680 sc-eQTL 4.17e-01 0.0621 0.0763 0.87 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -163059 sc-eQTL 3.47e-02 -0.26 0.122 0.872 B_Activated L2
ENSG00000162601 MYSM1 951650 sc-eQTL 6.81e-01 -0.0653 0.158 0.872 B_Activated L2
ENSG00000172456 FGGY 355089 sc-eQTL 4.41e-01 0.112 0.145 0.872 B_Activated L2
ENSG00000177606 JUN 867680 sc-eQTL 7.01e-01 -0.0508 0.132 0.872 B_Activated L2
ENSG00000237352 LINC01358 718084 sc-eQTL 6.45e-01 0.062 0.134 0.872 B_Activated L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 6.91e-01 0.0568 0.143 0.869 B_Intermediate L2
ENSG00000162601 MYSM1 951650 sc-eQTL 1.49e-01 -0.185 0.128 0.869 B_Intermediate L2
ENSG00000172456 FGGY 355089 sc-eQTL 8.38e-01 -0.0283 0.138 0.869 B_Intermediate L2
ENSG00000177606 JUN 867680 sc-eQTL 6.10e-01 0.0468 0.0917 0.869 B_Intermediate L2
ENSG00000237352 LINC01358 718084 sc-eQTL 6.85e-01 -0.0502 0.123 0.869 B_Intermediate L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 2.39e-01 0.147 0.125 0.871 B_Memory L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.11e-01 0.173 0.138 0.871 B_Memory L2
ENSG00000172456 FGGY 355089 sc-eQTL 1.83e-01 -0.192 0.143 0.871 B_Memory L2
ENSG00000177606 JUN 867680 sc-eQTL 8.58e-01 0.0184 0.103 0.871 B_Memory L2
ENSG00000237352 LINC01358 718084 sc-eQTL 9.01e-02 0.21 0.123 0.871 B_Memory L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 3.94e-01 -0.116 0.136 0.87 B_Naive1 L2
ENSG00000162601 MYSM1 951650 sc-eQTL 1.77e-01 -0.138 0.102 0.87 B_Naive1 L2
ENSG00000172456 FGGY 355089 sc-eQTL 4.69e-01 0.107 0.147 0.87 B_Naive1 L2
ENSG00000177606 JUN 867680 sc-eQTL 3.29e-02 -0.18 0.084 0.87 B_Naive1 L2
ENSG00000237352 LINC01358 718084 sc-eQTL 7.08e-01 0.0455 0.121 0.87 B_Naive1 L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 8.77e-02 0.235 0.137 0.871 B_Naive2 L2
ENSG00000162601 MYSM1 951650 sc-eQTL 5.98e-03 0.349 0.126 0.871 B_Naive2 L2
ENSG00000172456 FGGY 355089 sc-eQTL 9.68e-01 0.0056 0.14 0.871 B_Naive2 L2
ENSG00000177606 JUN 867680 sc-eQTL 1.23e-01 -0.151 0.0973 0.871 B_Naive2 L2
ENSG00000237352 LINC01358 718084 sc-eQTL 5.65e-01 -0.0668 0.116 0.871 B_Naive2 L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 6.16e-01 -0.0619 0.123 0.87 CD4_CTL L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.88e-01 -0.158 0.148 0.87 CD4_CTL L2
ENSG00000172456 FGGY 355089 sc-eQTL 8.69e-01 -0.022 0.133 0.87 CD4_CTL L2
ENSG00000177606 JUN 867680 sc-eQTL 8.58e-01 -0.0213 0.119 0.87 CD4_CTL L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 2.84e-01 -0.105 0.0974 0.87 CD4_Naive L2
ENSG00000162601 MYSM1 951650 sc-eQTL 3.98e-01 -0.0709 0.0837 0.87 CD4_Naive L2
ENSG00000172456 FGGY 355089 sc-eQTL 3.10e-01 0.144 0.142 0.87 CD4_Naive L2
ENSG00000177606 JUN 867680 sc-eQTL 5.66e-01 -0.0464 0.0807 0.87 CD4_Naive L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 9.45e-01 0.00744 0.108 0.87 CD4_TCM L2
ENSG00000162601 MYSM1 951650 sc-eQTL 7.02e-01 0.0379 0.0989 0.87 CD4_TCM L2
ENSG00000172456 FGGY 355089 sc-eQTL 2.43e-01 -0.166 0.141 0.87 CD4_TCM L2
ENSG00000177606 JUN 867680 sc-eQTL 7.90e-01 -0.0245 0.0916 0.87 CD4_TCM L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 9.52e-01 0.00859 0.143 0.87 CD4_TEM L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.18e-01 -0.155 0.125 0.87 CD4_TEM L2
ENSG00000172456 FGGY 355089 sc-eQTL 2.35e-01 0.163 0.136 0.87 CD4_TEM L2
ENSG00000177606 JUN 867680 sc-eQTL 8.17e-01 0.0243 0.105 0.87 CD4_TEM L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 5.35e-01 0.0793 0.128 0.87 CD8_CTL L2
ENSG00000162601 MYSM1 951650 sc-eQTL 5.77e-01 0.0622 0.111 0.87 CD8_CTL L2
ENSG00000172456 FGGY 355089 sc-eQTL 2.83e-01 0.154 0.143 0.87 CD8_CTL L2
ENSG00000177606 JUN 867680 sc-eQTL 6.28e-01 -0.0459 0.0946 0.87 CD8_CTL L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 7.45e-01 -0.0391 0.12 0.87 CD8_Naive L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.72e-01 -0.128 0.116 0.87 CD8_Naive L2
ENSG00000172456 FGGY 355089 sc-eQTL 1.79e-01 -0.195 0.145 0.87 CD8_Naive L2
ENSG00000177606 JUN 867680 sc-eQTL 1.40e-01 -0.147 0.099 0.87 CD8_Naive L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 1.24e-01 0.209 0.136 0.87 CD8_TCM L2
ENSG00000162601 MYSM1 951650 sc-eQTL 7.22e-01 -0.0537 0.151 0.87 CD8_TCM L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.26e-01 0.0511 0.146 0.87 CD8_TCM L2
ENSG00000177606 JUN 867680 sc-eQTL 9.42e-01 -0.00776 0.107 0.87 CD8_TCM L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 2.21e-01 0.15 0.122 0.868 CD8_TEM L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.90e-01 0.151 0.143 0.868 CD8_TEM L2
ENSG00000172456 FGGY 355089 sc-eQTL 2.34e-01 0.168 0.141 0.868 CD8_TEM L2
ENSG00000177606 JUN 867680 sc-eQTL 8.77e-01 -0.016 0.103 0.868 CD8_TEM L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 2.65e-01 0.146 0.131 0.87 MAIT L2
ENSG00000162601 MYSM1 951650 sc-eQTL 2.86e-01 -0.156 0.146 0.87 MAIT L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.07e-01 0.0533 0.142 0.87 MAIT L2
ENSG00000177606 JUN 867680 sc-eQTL 8.41e-01 0.0201 0.1 0.87 MAIT L2
ENSG00000162601 MYSM1 951650 sc-eQTL 9.93e-01 -0.00127 0.139 0.873 NK_CD56bright L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.94e-01 0.0368 0.141 0.873 NK_CD56bright L2
ENSG00000177606 JUN 867680 sc-eQTL 4.81e-01 0.0747 0.106 0.873 NK_CD56bright L2
ENSG00000162601 MYSM1 951650 sc-eQTL 6.16e-03 0.295 0.107 0.869 NK_CD56dim L2
ENSG00000172456 FGGY 355089 sc-eQTL 5.51e-01 0.0861 0.144 0.869 NK_CD56dim L2
ENSG00000177606 JUN 867680 sc-eQTL 7.91e-01 -0.0252 0.0949 0.869 NK_CD56dim L2
ENSG00000162601 MYSM1 951650 sc-eQTL 1.75e-01 0.189 0.139 0.87 NK_HLA L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.67e-01 -0.0412 0.139 0.87 NK_HLA L2
ENSG00000177606 JUN 867680 sc-eQTL 7.73e-01 0.0364 0.126 0.87 NK_HLA L2
ENSG00000162601 MYSM1 951650 sc-eQTL 3.87e-01 0.104 0.12 0.869 NK_cytokine L2
ENSG00000172456 FGGY 355089 sc-eQTL 1.93e-01 -0.179 0.137 0.869 NK_cytokine L2
ENSG00000177606 JUN 867680 sc-eQTL 3.97e-01 -0.0792 0.0934 0.869 NK_cytokine L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 5.50e-02 0.302 0.156 0.878 PB L2
ENSG00000162601 MYSM1 951650 sc-eQTL 3.65e-02 -0.321 0.152 0.878 PB L2
ENSG00000172456 FGGY 355089 sc-eQTL 3.18e-01 -0.155 0.155 0.878 PB L2
ENSG00000177606 JUN 867680 sc-eQTL 1.65e-01 0.223 0.16 0.878 PB L2
ENSG00000237352 LINC01358 718084 sc-eQTL 1.53e-01 -0.188 0.131 0.878 PB L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 3.62e-01 0.11 0.12 0.872 Pro_T L2
ENSG00000162601 MYSM1 951650 sc-eQTL 7.26e-01 0.0518 0.148 0.872 Pro_T L2
ENSG00000172456 FGGY 355089 sc-eQTL 9.84e-01 0.00284 0.14 0.872 Pro_T L2
ENSG00000177606 JUN 867680 sc-eQTL 8.91e-01 0.0131 0.0955 0.872 Pro_T L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 1.70e-01 -0.167 0.121 0.87 Treg L2
ENSG00000162601 MYSM1 951650 sc-eQTL 7.66e-01 0.0401 0.135 0.87 Treg L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.77e-01 0.0397 0.14 0.87 Treg L2
ENSG00000177606 JUN 867680 sc-eQTL 4.84e-01 -0.0537 0.0766 0.87 Treg L2
ENSG00000162601 MYSM1 951650 sc-eQTL 3.26e-01 0.154 0.157 0.88 cDC L2
ENSG00000172456 FGGY 355089 sc-eQTL 5.91e-01 -0.0757 0.141 0.88 cDC L2
ENSG00000177606 JUN 867680 sc-eQTL 9.37e-01 0.00995 0.126 0.88 cDC L2
ENSG00000162601 MYSM1 951650 sc-eQTL 4.09e-01 0.0966 0.117 0.87 cMono_IL1B L2
ENSG00000172456 FGGY 355089 sc-eQTL 7.50e-01 -0.0442 0.139 0.87 cMono_IL1B L2
ENSG00000177606 JUN 867680 sc-eQTL 4.26e-01 0.0812 0.102 0.87 cMono_IL1B L2
ENSG00000162601 MYSM1 951650 sc-eQTL 6.76e-01 0.054 0.129 0.87 cMono_S100A L2
ENSG00000172456 FGGY 355089 sc-eQTL 3.88e-01 -0.124 0.144 0.87 cMono_S100A L2
ENSG00000177606 JUN 867680 sc-eQTL 2.15e-01 0.146 0.117 0.87 cMono_S100A L2
ENSG00000134709 HOOK1 -163059 sc-eQTL 3.16e-01 0.146 0.145 0.867 gdT L2
ENSG00000162601 MYSM1 951650 sc-eQTL 5.21e-01 0.113 0.176 0.867 gdT L2
ENSG00000172456 FGGY 355089 sc-eQTL 5.12e-01 0.104 0.158 0.867 gdT L2
ENSG00000177606 JUN 867680 sc-eQTL 4.91e-01 0.076 0.11 0.867 gdT L2
ENSG00000162601 MYSM1 951650 sc-eQTL 3.77e-01 0.132 0.149 0.873 intMono L2
ENSG00000172456 FGGY 355089 sc-eQTL 2.17e-01 -0.161 0.13 0.873 intMono L2
ENSG00000177606 JUN 867680 sc-eQTL 6.21e-01 0.0566 0.114 0.873 intMono L2
ENSG00000162601 MYSM1 951650 sc-eQTL 6.23e-01 0.0731 0.148 0.873 ncMono L2
ENSG00000172456 FGGY 355089 sc-eQTL 6.72e-01 0.0585 0.138 0.873 ncMono L2
ENSG00000177606 JUN 867680 sc-eQTL 1.43e-01 0.164 0.112 0.873 ncMono L2
ENSG00000162601 MYSM1 951650 sc-eQTL 1.90e-01 -0.204 0.155 0.876 pDC L2
ENSG00000172456 FGGY 355089 sc-eQTL 9.15e-02 -0.234 0.138 0.876 pDC L2
ENSG00000177606 JUN 867680 sc-eQTL 6.61e-01 0.0589 0.134 0.876 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -163059 sc-eQTL 6.99e-01 0.0476 0.123 0.87 B_Memory LOneK1K
ENSG00000162601 MYSM1 951650 sc-eQTL 6.79e-01 -0.0477 0.115 0.87 B_Memory LOneK1K
ENSG00000172456 FGGY 355089 sc-eQTL 3.27e-01 -0.126 0.128 0.87 B_Memory LOneK1K
ENSG00000177606 JUN 867680 sc-eQTL 7.36e-01 -0.03 0.0891 0.87 B_Memory LOneK1K
ENSG00000237352 LINC01358 718084 sc-eQTL 7.45e-02 0.234 0.131 0.87 B_Memory LOneK1K
ENSG00000134709 HOOK1 -163059 sc-eQTL 9.09e-01 -0.0151 0.132 0.87 B_Naive LOneK1K
ENSG00000162601 MYSM1 951650 sc-eQTL 3.16e-01 0.105 0.104 0.87 B_Naive LOneK1K
ENSG00000172456 FGGY 355089 sc-eQTL 6.39e-01 0.0656 0.14 0.87 B_Naive LOneK1K
ENSG00000177606 JUN 867680 sc-eQTL 1.56e-01 -0.124 0.0873 0.87 B_Naive LOneK1K
ENSG00000237352 LINC01358 718084 sc-eQTL 8.18e-01 0.0299 0.13 0.87 B_Naive LOneK1K
ENSG00000162601 MYSM1 951650 sc-eQTL 6.10e-01 0.0541 0.106 0.87 CD14_Mono LOneK1K
ENSG00000172456 FGGY 355089 sc-eQTL 6.93e-01 -0.0558 0.141 0.87 CD14_Mono LOneK1K
ENSG00000177606 JUN 867680 sc-eQTL 1.46e-01 0.148 0.101 0.87 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 951650 sc-eQTL 6.24e-01 0.0686 0.14 0.871 CD16_Mono LOneK1K
ENSG00000172456 FGGY 355089 sc-eQTL 4.64e-01 -0.107 0.146 0.871 CD16_Mono LOneK1K
ENSG00000177606 JUN 867680 sc-eQTL 2.88e-01 0.114 0.107 0.871 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 951650 sc-eQTL 4.87e-02 0.189 0.0955 0.869 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 355089 sc-eQTL 6.32e-01 -0.0667 0.139 0.869 NK_CD56dim LOneK1K
ENSG00000177606 JUN 867680 sc-eQTL 6.70e-01 -0.0369 0.0865 0.869 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172456 FGGY 355089 eQTL 0.000721 -0.127 0.0375 0.00161 0.0 0.111

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172456 FGGY 355089 3.24e-06 4.83e-06 8.72e-07 2.73e-06 1.66e-06 1.57e-06 2.5e-06 9.78e-07 3.5e-06 1.7e-06 4.85e-06 3.29e-06 6.49e-06 2.34e-06 1.45e-06 2.42e-06 2.06e-06 2.54e-06 1.43e-06 1.02e-06 1.97e-06 3.97e-06 3.4e-06 1.65e-06 4.68e-06 1.34e-06 2.35e-06 1.71e-06 3.79e-06 3.64e-06 2.19e-06 5.58e-07 7.95e-07 1.79e-06 1.92e-06 9.86e-07 1.03e-06 4.91e-07 9.31e-07 4.88e-07 2.11e-07 4.18e-06 4.01e-07 1.54e-07 3.68e-07 5.34e-07 8.02e-07 4.43e-07 1.58e-07
ENSG00000177606 \N 867400 6.33e-07 8.69e-07 1.6e-07 3.25e-07 2.33e-07 3.22e-07 5.49e-07 2.62e-07 5.3e-07 2.37e-07 1.07e-06 5.28e-07 9.1e-07 2.05e-07 4.05e-07 2.45e-07 4.87e-07 4.11e-07 4e-07 2.76e-07 2.05e-07 4.79e-07 3.19e-07 2.29e-07 9.26e-07 2.68e-07 3.68e-07 3.62e-07 3.56e-07 8.36e-07 3.81e-07 6.31e-08 4.35e-08 2.08e-07 3.5e-07 3.32e-07 4.61e-07 8.15e-08 8.35e-08 8.72e-09 4.51e-08 4.04e-07 5.09e-08 2.62e-08 9.79e-08 1.55e-08 8.01e-08 2.44e-08 5.05e-08