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Genes within 1Mb (chr1:59606074:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.20e-01 0.105 0.129 0.889 B L1
ENSG00000162601 MYSM1 905997 sc-eQTL 6.67e-01 -0.0435 0.101 0.889 B L1
ENSG00000172456 FGGY 309436 sc-eQTL 2.23e-01 -0.172 0.141 0.889 B L1
ENSG00000177606 JUN 822027 sc-eQTL 5.25e-01 -0.0577 0.0906 0.889 B L1
ENSG00000237352 LINC01358 672431 sc-eQTL 8.34e-01 0.0226 0.107 0.889 B L1
ENSG00000134709 HOOK1 -208712 sc-eQTL 3.30e-01 -0.083 0.085 0.889 CD4T L1
ENSG00000162601 MYSM1 905997 sc-eQTL 6.47e-01 -0.0347 0.0756 0.889 CD4T L1
ENSG00000172456 FGGY 309436 sc-eQTL 7.36e-01 -0.0492 0.146 0.889 CD4T L1
ENSG00000177606 JUN 822027 sc-eQTL 4.26e-01 -0.0686 0.0861 0.889 CD4T L1
ENSG00000134709 HOOK1 -208712 sc-eQTL 3.20e-01 0.0831 0.0833 0.889 CD8T L1
ENSG00000162601 MYSM1 905997 sc-eQTL 7.62e-01 -0.0294 0.0969 0.889 CD8T L1
ENSG00000172456 FGGY 309436 sc-eQTL 6.14e-01 0.0757 0.15 0.889 CD8T L1
ENSG00000177606 JUN 822027 sc-eQTL 3.72e-01 -0.0735 0.0822 0.889 CD8T L1
ENSG00000162601 MYSM1 905997 sc-eQTL 5.78e-01 0.0839 0.15 0.89 DC L1
ENSG00000172456 FGGY 309436 sc-eQTL 1.62e-01 -0.194 0.138 0.89 DC L1
ENSG00000177606 JUN 822027 sc-eQTL 2.04e-01 0.165 0.129 0.89 DC L1
ENSG00000162601 MYSM1 905997 sc-eQTL 6.41e-01 0.0543 0.116 0.889 Mono L1
ENSG00000172456 FGGY 309436 sc-eQTL 2.11e-01 -0.191 0.152 0.889 Mono L1
ENSG00000177606 JUN 822027 sc-eQTL 4.85e-01 0.0717 0.102 0.889 Mono L1
ENSG00000162601 MYSM1 905997 sc-eQTL 4.45e-02 0.2 0.0989 0.888 NK L1
ENSG00000172456 FGGY 309436 sc-eQTL 6.92e-01 0.0575 0.145 0.888 NK L1
ENSG00000177606 JUN 822027 sc-eQTL 3.00e-01 -0.0934 0.0899 0.888 NK L1
ENSG00000134709 HOOK1 -208712 sc-eQTL 8.87e-01 0.0179 0.126 0.889 Other_T L1
ENSG00000162601 MYSM1 905997 sc-eQTL 6.75e-01 -0.0581 0.138 0.889 Other_T L1
ENSG00000172456 FGGY 309436 sc-eQTL 6.78e-01 0.0621 0.149 0.889 Other_T L1
ENSG00000177606 JUN 822027 sc-eQTL 5.27e-01 0.0507 0.0801 0.889 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.74e-02 -0.258 0.129 0.895 B_Activated L2
ENSG00000162601 MYSM1 905997 sc-eQTL 3.37e-01 -0.161 0.167 0.895 B_Activated L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.11e-01 -0.0171 0.153 0.895 B_Activated L2
ENSG00000177606 JUN 822027 sc-eQTL 9.36e-01 -0.0112 0.14 0.895 B_Activated L2
ENSG00000237352 LINC01358 672431 sc-eQTL 6.10e-01 0.0727 0.142 0.895 B_Activated L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 7.22e-01 -0.0527 0.148 0.888 B_Intermediate L2
ENSG00000162601 MYSM1 905997 sc-eQTL 1.11e-01 -0.212 0.132 0.888 B_Intermediate L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.34e-01 0.0119 0.143 0.888 B_Intermediate L2
ENSG00000177606 JUN 822027 sc-eQTL 7.15e-01 0.0348 0.0951 0.888 B_Intermediate L2
ENSG00000237352 LINC01358 672431 sc-eQTL 4.07e-01 -0.106 0.128 0.888 B_Intermediate L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.92e-01 0.0899 0.131 0.89 B_Memory L2
ENSG00000162601 MYSM1 905997 sc-eQTL 7.53e-01 0.0455 0.144 0.89 B_Memory L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.06e-02 -0.254 0.149 0.89 B_Memory L2
ENSG00000177606 JUN 822027 sc-eQTL 4.50e-01 0.0814 0.108 0.89 B_Memory L2
ENSG00000237352 LINC01358 672431 sc-eQTL 5.58e-02 0.248 0.129 0.89 B_Memory L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 3.97e-01 -0.121 0.143 0.889 B_Naive1 L2
ENSG00000162601 MYSM1 905997 sc-eQTL 1.25e-01 -0.165 0.107 0.889 B_Naive1 L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.60e-01 0.00775 0.155 0.889 B_Naive1 L2
ENSG00000177606 JUN 822027 sc-eQTL 1.04e-01 -0.145 0.0888 0.889 B_Naive1 L2
ENSG00000237352 LINC01358 672431 sc-eQTL 8.42e-01 0.0256 0.128 0.889 B_Naive1 L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 6.67e-02 0.263 0.143 0.891 B_Naive2 L2
ENSG00000162601 MYSM1 905997 sc-eQTL 1.02e-02 0.341 0.132 0.891 B_Naive2 L2
ENSG00000172456 FGGY 309436 sc-eQTL 6.81e-01 -0.0603 0.146 0.891 B_Naive2 L2
ENSG00000177606 JUN 822027 sc-eQTL 1.70e-01 -0.14 0.102 0.891 B_Naive2 L2
ENSG00000237352 LINC01358 672431 sc-eQTL 3.04e-01 -0.124 0.121 0.891 B_Naive2 L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.56e-01 -0.0966 0.129 0.889 CD4_CTL L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.31e-01 -0.123 0.156 0.889 CD4_CTL L2
ENSG00000172456 FGGY 309436 sc-eQTL 7.94e-01 0.0364 0.139 0.889 CD4_CTL L2
ENSG00000177606 JUN 822027 sc-eQTL 7.98e-01 -0.0318 0.124 0.889 CD4_CTL L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 3.27e-01 -0.1 0.102 0.889 CD4_Naive L2
ENSG00000162601 MYSM1 905997 sc-eQTL 3.89e-01 -0.0758 0.0878 0.889 CD4_Naive L2
ENSG00000172456 FGGY 309436 sc-eQTL 8.36e-01 0.0308 0.149 0.889 CD4_Naive L2
ENSG00000177606 JUN 822027 sc-eQTL 7.17e-01 -0.0307 0.0846 0.889 CD4_Naive L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 9.49e-01 0.00735 0.114 0.889 CD4_TCM L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.62e-01 0.0771 0.104 0.889 CD4_TCM L2
ENSG00000172456 FGGY 309436 sc-eQTL 2.42e-01 -0.175 0.149 0.889 CD4_TCM L2
ENSG00000177606 JUN 822027 sc-eQTL 6.49e-01 -0.0442 0.0968 0.889 CD4_TCM L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 5.97e-01 -0.0799 0.151 0.889 CD4_TEM L2
ENSG00000162601 MYSM1 905997 sc-eQTL 2.92e-01 -0.14 0.133 0.889 CD4_TEM L2
ENSG00000172456 FGGY 309436 sc-eQTL 2.07e-01 0.183 0.144 0.889 CD4_TEM L2
ENSG00000177606 JUN 822027 sc-eQTL 8.11e-01 0.0265 0.111 0.889 CD4_TEM L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 2.82e-01 0.146 0.136 0.889 CD8_CTL L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.66e-01 0.0864 0.118 0.889 CD8_CTL L2
ENSG00000172456 FGGY 309436 sc-eQTL 5.22e-01 0.0976 0.152 0.889 CD8_CTL L2
ENSG00000177606 JUN 822027 sc-eQTL 7.22e-01 -0.0359 0.101 0.889 CD8_CTL L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.18e-01 -0.102 0.126 0.889 CD8_Naive L2
ENSG00000162601 MYSM1 905997 sc-eQTL 1.70e-01 -0.167 0.122 0.889 CD8_Naive L2
ENSG00000172456 FGGY 309436 sc-eQTL 2.58e-01 -0.173 0.152 0.889 CD8_Naive L2
ENSG00000177606 JUN 822027 sc-eQTL 3.26e-01 -0.103 0.104 0.889 CD8_Naive L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 1.07e-01 0.231 0.142 0.891 CD8_TCM L2
ENSG00000162601 MYSM1 905997 sc-eQTL 7.55e-01 -0.0495 0.159 0.891 CD8_TCM L2
ENSG00000172456 FGGY 309436 sc-eQTL 8.83e-01 -0.0225 0.153 0.891 CD8_TCM L2
ENSG00000177606 JUN 822027 sc-eQTL 8.92e-01 0.0153 0.112 0.891 CD8_TCM L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.38e-01 0.101 0.129 0.888 CD8_TEM L2
ENSG00000162601 MYSM1 905997 sc-eQTL 5.01e-01 0.102 0.151 0.888 CD8_TEM L2
ENSG00000172456 FGGY 309436 sc-eQTL 1.38e-01 0.221 0.148 0.888 CD8_TEM L2
ENSG00000177606 JUN 822027 sc-eQTL 8.58e-01 -0.0195 0.109 0.888 CD8_TEM L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.75e-01 0.0985 0.138 0.89 MAIT L2
ENSG00000162601 MYSM1 905997 sc-eQTL 2.46e-01 -0.178 0.153 0.89 MAIT L2
ENSG00000172456 FGGY 309436 sc-eQTL 7.91e-01 0.0395 0.149 0.89 MAIT L2
ENSG00000177606 JUN 822027 sc-eQTL 7.10e-01 0.0391 0.105 0.89 MAIT L2
ENSG00000162601 MYSM1 905997 sc-eQTL 9.96e-01 -0.000707 0.146 0.891 NK_CD56bright L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.31e-01 0.0129 0.148 0.891 NK_CD56bright L2
ENSG00000177606 JUN 822027 sc-eQTL 2.66e-01 0.124 0.111 0.891 NK_CD56bright L2
ENSG00000162601 MYSM1 905997 sc-eQTL 1.15e-02 0.288 0.113 0.888 NK_CD56dim L2
ENSG00000172456 FGGY 309436 sc-eQTL 1.86e-01 0.201 0.152 0.888 NK_CD56dim L2
ENSG00000177606 JUN 822027 sc-eQTL 5.67e-01 -0.0574 0.1 0.888 NK_CD56dim L2
ENSG00000162601 MYSM1 905997 sc-eQTL 2.25e-01 0.178 0.146 0.888 NK_HLA L2
ENSG00000172456 FGGY 309436 sc-eQTL 9.63e-01 -0.00685 0.146 0.888 NK_HLA L2
ENSG00000177606 JUN 822027 sc-eQTL 9.09e-01 0.0152 0.133 0.888 NK_HLA L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.78e-01 0.0891 0.125 0.888 NK_cytokine L2
ENSG00000172456 FGGY 309436 sc-eQTL 2.77e-01 -0.157 0.144 0.888 NK_cytokine L2
ENSG00000177606 JUN 822027 sc-eQTL 1.65e-01 -0.136 0.0975 0.888 NK_cytokine L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 1.52e-01 0.237 0.164 0.896 PB L2
ENSG00000162601 MYSM1 905997 sc-eQTL 3.15e-02 -0.345 0.159 0.896 PB L2
ENSG00000172456 FGGY 309436 sc-eQTL 5.22e-01 -0.104 0.162 0.896 PB L2
ENSG00000177606 JUN 822027 sc-eQTL 3.92e-01 0.144 0.168 0.896 PB L2
ENSG00000237352 LINC01358 672431 sc-eQTL 3.46e-01 -0.13 0.138 0.896 PB L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.33e-01 0.1 0.127 0.891 Pro_T L2
ENSG00000162601 MYSM1 905997 sc-eQTL 9.92e-01 0.0016 0.156 0.891 Pro_T L2
ENSG00000172456 FGGY 309436 sc-eQTL 8.27e-01 0.0324 0.148 0.891 Pro_T L2
ENSG00000177606 JUN 822027 sc-eQTL 8.58e-01 -0.018 0.101 0.891 Pro_T L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 4.77e-02 -0.253 0.127 0.889 Treg L2
ENSG00000162601 MYSM1 905997 sc-eQTL 5.30e-01 0.0893 0.142 0.889 Treg L2
ENSG00000172456 FGGY 309436 sc-eQTL 6.87e-01 0.0596 0.147 0.889 Treg L2
ENSG00000177606 JUN 822027 sc-eQTL 5.46e-01 -0.049 0.0809 0.889 Treg L2
ENSG00000162601 MYSM1 905997 sc-eQTL 6.57e-01 0.0723 0.163 0.893 cDC L2
ENSG00000172456 FGGY 309436 sc-eQTL 2.62e-01 -0.164 0.146 0.893 cDC L2
ENSG00000177606 JUN 822027 sc-eQTL 4.09e-01 0.108 0.131 0.893 cDC L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.87e-01 0.0854 0.123 0.889 cMono_IL1B L2
ENSG00000172456 FGGY 309436 sc-eQTL 3.70e-01 -0.131 0.145 0.889 cMono_IL1B L2
ENSG00000177606 JUN 822027 sc-eQTL 4.44e-01 0.082 0.107 0.889 cMono_IL1B L2
ENSG00000162601 MYSM1 905997 sc-eQTL 8.64e-01 -0.0233 0.135 0.889 cMono_S100A L2
ENSG00000172456 FGGY 309436 sc-eQTL 3.72e-01 -0.135 0.151 0.889 cMono_S100A L2
ENSG00000177606 JUN 822027 sc-eQTL 1.01e-01 0.203 0.123 0.889 cMono_S100A L2
ENSG00000134709 HOOK1 -208712 sc-eQTL 3.22e-01 0.148 0.149 0.882 gdT L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.38e-01 0.14 0.181 0.882 gdT L2
ENSG00000172456 FGGY 309436 sc-eQTL 3.92e-01 0.139 0.162 0.882 gdT L2
ENSG00000177606 JUN 822027 sc-eQTL 5.09e-01 0.0747 0.113 0.882 gdT L2
ENSG00000162601 MYSM1 905997 sc-eQTL 4.82e-01 0.11 0.156 0.889 intMono L2
ENSG00000172456 FGGY 309436 sc-eQTL 3.84e-01 -0.119 0.136 0.889 intMono L2
ENSG00000177606 JUN 822027 sc-eQTL 4.58e-01 0.089 0.12 0.889 intMono L2
ENSG00000162601 MYSM1 905997 sc-eQTL 5.29e-01 0.0984 0.156 0.891 ncMono L2
ENSG00000172456 FGGY 309436 sc-eQTL 8.53e-01 0.0269 0.145 0.891 ncMono L2
ENSG00000177606 JUN 822027 sc-eQTL 1.22e-01 0.183 0.118 0.891 ncMono L2
ENSG00000162601 MYSM1 905997 sc-eQTL 6.31e-02 -0.304 0.163 0.893 pDC L2
ENSG00000172456 FGGY 309436 sc-eQTL 8.39e-02 -0.252 0.145 0.893 pDC L2
ENSG00000177606 JUN 822027 sc-eQTL 8.66e-01 0.0238 0.141 0.893 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -208712 sc-eQTL 9.08e-01 -0.0148 0.129 0.889 B_Memory LOneK1K
ENSG00000162601 MYSM1 905997 sc-eQTL 1.16e-01 -0.189 0.12 0.889 B_Memory LOneK1K
ENSG00000172456 FGGY 309436 sc-eQTL 2.49e-01 -0.155 0.134 0.889 B_Memory LOneK1K
ENSG00000177606 JUN 822027 sc-eQTL 9.22e-01 0.00907 0.0931 0.889 B_Memory LOneK1K
ENSG00000237352 LINC01358 672431 sc-eQTL 1.13e-01 0.218 0.137 0.889 B_Memory LOneK1K
ENSG00000134709 HOOK1 -208712 sc-eQTL 8.80e-01 0.0209 0.138 0.889 B_Naive LOneK1K
ENSG00000162601 MYSM1 905997 sc-eQTL 4.60e-01 0.0812 0.11 0.889 B_Naive LOneK1K
ENSG00000172456 FGGY 309436 sc-eQTL 8.67e-01 -0.0245 0.147 0.889 B_Naive LOneK1K
ENSG00000177606 JUN 822027 sc-eQTL 2.94e-01 -0.0966 0.0919 0.889 B_Naive LOneK1K
ENSG00000237352 LINC01358 672431 sc-eQTL 8.26e-01 -0.0301 0.137 0.889 B_Naive LOneK1K
ENSG00000162601 MYSM1 905997 sc-eQTL 7.49e-01 0.0358 0.112 0.889 CD14_Mono LOneK1K
ENSG00000172456 FGGY 309436 sc-eQTL 3.22e-01 -0.147 0.148 0.889 CD14_Mono LOneK1K
ENSG00000177606 JUN 822027 sc-eQTL 1.97e-01 0.138 0.107 0.889 CD14_Mono LOneK1K
ENSG00000162601 MYSM1 905997 sc-eQTL 4.78e-01 0.104 0.147 0.888 CD16_Mono LOneK1K
ENSG00000172456 FGGY 309436 sc-eQTL 4.26e-01 -0.122 0.153 0.888 CD16_Mono LOneK1K
ENSG00000177606 JUN 822027 sc-eQTL 1.48e-01 0.163 0.112 0.888 CD16_Mono LOneK1K
ENSG00000162601 MYSM1 905997 sc-eQTL 7.39e-02 0.18 0.1 0.888 NK_CD56dim LOneK1K
ENSG00000172456 FGGY 309436 sc-eQTL 8.50e-01 0.0276 0.146 0.888 NK_CD56dim LOneK1K
ENSG00000177606 JUN 822027 sc-eQTL 3.10e-01 -0.092 0.0905 0.888 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172456 FGGY 309436 eQTL 0.000683 -0.135 0.0396 0.0 0.0 0.101
ENSG00000232453 AC105277.1 702327 eQTL 0.0361 0.0768 0.0366 0.00112 0.0 0.101

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172456 FGGY 309436 4.54e-06 7.21e-06 4.64e-07 1.9e-06 4.58e-07 1.21e-06 9.17e-06 4.02e-07 5.06e-06 1.66e-06 1.41e-05 3.43e-06 1.31e-05 1.96e-06 4.39e-06 3.91e-06 1.81e-06 3.49e-06 5.23e-07 7.68e-07 2.2e-06 7.6e-06 3.3e-06 5.6e-07 8.24e-06 1.22e-06 2.18e-06 1.83e-06 4.47e-06 3.61e-06 4.13e-06 4.53e-08 2.19e-07 1.21e-06 9.46e-07 8.93e-07 3.96e-07 2.24e-07 5.99e-07 3.53e-07 1.95e-07 0.000501 8.82e-07 1.43e-08 1.85e-07 3.56e-07 1.37e-07 2.85e-09 5.76e-08