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Genes within 1Mb (chr1:59353630:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -461156 sc-eQTL 1.43e-01 0.253 0.172 0.054 B_Activated L2
ENSG00000162600 OMA1 806828 sc-eQTL 2.05e-01 0.258 0.203 0.054 B_Activated L2
ENSG00000162601 MYSM1 653553 sc-eQTL 8.94e-01 -0.0295 0.222 0.054 B_Activated L2
ENSG00000172456 FGGY 56992 sc-eQTL 6.74e-01 0.0856 0.203 0.054 B_Activated L2
ENSG00000177606 JUN 569583 sc-eQTL 7.60e-01 0.0567 0.185 0.054 B_Activated L2
ENSG00000237352 LINC01358 419987 sc-eQTL 4.34e-01 -0.148 0.188 0.054 B_Activated L2
ENSG00000134709 HOOK1 -461156 sc-eQTL 6.01e-01 -0.0943 0.18 0.05 CD4_CTL L2
ENSG00000162600 OMA1 806828 sc-eQTL 3.32e-01 0.204 0.21 0.05 CD4_CTL L2
ENSG00000162601 MYSM1 653553 sc-eQTL 4.99e-01 0.147 0.217 0.05 CD4_CTL L2
ENSG00000172456 FGGY 56992 sc-eQTL 8.53e-01 -0.0359 0.194 0.05 CD4_CTL L2
ENSG00000177606 JUN 569583 sc-eQTL 9.49e-01 0.0112 0.173 0.05 CD4_CTL L2
ENSG00000134709 HOOK1 -461156 sc-eQTL 7.89e-01 0.0539 0.201 0.051 CD8_TCM L2
ENSG00000162600 OMA1 806828 sc-eQTL 3.02e-01 -0.211 0.204 0.051 CD8_TCM L2
ENSG00000162601 MYSM1 653553 sc-eQTL 8.48e-01 0.0429 0.223 0.051 CD8_TCM L2
ENSG00000172456 FGGY 56992 sc-eQTL 3.81e-01 0.188 0.214 0.051 CD8_TCM L2
ENSG00000177606 JUN 569583 sc-eQTL 4.78e-01 0.112 0.157 0.051 CD8_TCM L2
ENSG00000134709 HOOK1 -461156 sc-eQTL 6.39e-01 0.108 0.231 0.052 PB L2
ENSG00000162600 OMA1 806828 sc-eQTL 7.40e-01 -0.0797 0.24 0.052 PB L2
ENSG00000162601 MYSM1 653553 sc-eQTL 2.57e-01 0.256 0.224 0.052 PB L2
ENSG00000172456 FGGY 56992 sc-eQTL 6.10e-01 0.116 0.227 0.052 PB L2
ENSG00000177606 JUN 569583 sc-eQTL 9.32e-01 0.0202 0.235 0.052 PB L2
ENSG00000237352 LINC01358 419987 sc-eQTL 7.29e-01 0.0669 0.193 0.052 PB L2
ENSG00000134709 HOOK1 -461156 sc-eQTL 4.66e-01 0.153 0.209 0.055 gdT L2
ENSG00000162600 OMA1 806828 sc-eQTL 9.84e-01 0.00433 0.211 0.055 gdT L2
ENSG00000162601 MYSM1 653553 sc-eQTL 3.31e-01 0.246 0.252 0.055 gdT L2
ENSG00000172456 FGGY 56992 sc-eQTL 8.77e-01 0.0353 0.227 0.055 gdT L2
ENSG00000173406 DAB1 806896 sc-eQTL 6.07e-01 0.0826 0.16 0.055 gdT L2
ENSG00000177606 JUN 569583 sc-eQTL 7.14e-01 -0.0581 0.158 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162600 OMA1 806828 eQTL 0.02 0.0845 0.0363 0.0 0.0 0.0756
ENSG00000172456 FGGY 56992 eQTL 4.23e-05 0.181 0.044 0.0 0.0 0.0756
ENSG00000184292 TACSTD2 775857 pQTL 0.0371 -0.106 0.0508 0.0 0.0 0.0683

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172456 FGGY 56992 1.41e-05 1.58e-05 1.89e-06 8.12e-06 2.36e-06 5.49e-06 1.56e-05 2.43e-06 1.32e-05 5.93e-06 1.75e-05 6.5e-06 2.33e-05 4.99e-06 3.8e-06 8.04e-06 6.86e-06 1e-05 3.32e-06 3.17e-06 6.77e-06 1.27e-05 1.14e-05 3.4e-06 2.4e-05 4.33e-06 7.15e-06 5.39e-06 1.37e-05 9.42e-06 8.9e-06 1.04e-06 1.12e-06 3.5e-06 5.63e-06 2.65e-06 1.86e-06 1.96e-06 2.11e-06 1.03e-06 9.9e-07 1.86e-05 1.61e-06 1.96e-07 7.93e-07 1.89e-06 1.79e-06 7.75e-07 4.86e-07