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Genes within 1Mb (chr1:58949805:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000134709 HOOK1 -864981 sc-eQTL 1.45e-01 0.246 0.168 0.051 B_Activated L2
ENSG00000162600 OMA1 403003 sc-eQTL 4.21e-01 -0.16 0.198 0.051 B_Activated L2
ENSG00000162601 MYSM1 249728 sc-eQTL 5.63e-01 -0.126 0.217 0.051 B_Activated L2
ENSG00000172456 FGGY -346833 sc-eQTL 9.14e-01 -0.0213 0.198 0.051 B_Activated L2
ENSG00000177606 JUN 165758 sc-eQTL 9.61e-01 -0.00896 0.181 0.051 B_Activated L2
ENSG00000237352 LINC01358 16162 sc-eQTL 6.65e-01 -0.0798 0.184 0.051 B_Activated L2
ENSG00000134709 HOOK1 -864981 sc-eQTL 4.13e-01 -0.15 0.183 0.052 CD4_CTL L2
ENSG00000162600 OMA1 403003 sc-eQTL 9.56e-01 0.0119 0.214 0.052 CD4_CTL L2
ENSG00000162601 MYSM1 249728 sc-eQTL 2.16e-01 0.274 0.22 0.052 CD4_CTL L2
ENSG00000172456 FGGY -346833 sc-eQTL 1.95e-01 0.256 0.196 0.052 CD4_CTL L2
ENSG00000177606 JUN 165758 sc-eQTL 6.79e-01 -0.0731 0.176 0.052 CD4_CTL L2
ENSG00000162600 OMA1 403003 sc-eQTL 9.72e-01 0.0074 0.208 0.051 NK_CD56bright L2
ENSG00000162601 MYSM1 249728 sc-eQTL 6.52e-01 0.0906 0.201 0.051 NK_CD56bright L2
ENSG00000172456 FGGY -346833 sc-eQTL 2.45e-02 0.457 0.202 0.051 NK_CD56bright L2
ENSG00000177606 JUN 165758 sc-eQTL 1.18e-01 0.24 0.153 0.051 NK_CD56bright L2
ENSG00000162600 OMA1 403003 sc-eQTL 9.08e-01 -0.0237 0.206 0.053 NK_HLA L2
ENSG00000162601 MYSM1 249728 sc-eQTL 2.94e-01 0.213 0.203 0.053 NK_HLA L2
ENSG00000172456 FGGY -346833 sc-eQTL 4.32e-02 0.408 0.201 0.053 NK_HLA L2
ENSG00000177606 JUN 165758 sc-eQTL 7.78e-01 -0.0519 0.184 0.053 NK_HLA L2
ENSG00000134709 HOOK1 -864981 sc-eQTL 5.23e-01 -0.137 0.213 0.059 PB L2
ENSG00000162600 OMA1 403003 sc-eQTL 2.65e-01 -0.247 0.221 0.059 PB L2
ENSG00000162601 MYSM1 249728 sc-eQTL 9.62e-01 -0.0101 0.209 0.059 PB L2
ENSG00000172456 FGGY -346833 sc-eQTL 4.05e-01 -0.175 0.209 0.059 PB L2
ENSG00000177606 JUN 165758 sc-eQTL 9.80e-01 0.0054 0.218 0.059 PB L2
ENSG00000237352 LINC01358 16162 sc-eQTL 5.66e-01 0.103 0.178 0.059 PB L2
ENSG00000134709 HOOK1 -864981 sc-eQTL 7.66e-01 -0.0508 0.171 0.05 Pro_T L2
ENSG00000162600 OMA1 403003 sc-eQTL 6.73e-01 0.0759 0.179 0.05 Pro_T L2
ENSG00000162601 MYSM1 249728 sc-eQTL 9.07e-01 0.0245 0.209 0.05 Pro_T L2
ENSG00000172456 FGGY -346833 sc-eQTL 2.43e-01 -0.231 0.198 0.05 Pro_T L2
ENSG00000173406 DAB1 403071 sc-eQTL 9.71e-01 0.00514 0.141 0.05 Pro_T L2
ENSG00000177606 JUN 165758 sc-eQTL 6.66e-01 0.0584 0.135 0.05 Pro_T L2
ENSG00000162600 OMA1 403003 sc-eQTL 5.59e-01 -0.111 0.19 0.051 cDC L2
ENSG00000162601 MYSM1 249728 sc-eQTL 3.09e-01 -0.216 0.211 0.051 cDC L2
ENSG00000172456 FGGY -346833 sc-eQTL 9.50e-01 -0.012 0.19 0.051 cDC L2
ENSG00000177606 JUN 165758 sc-eQTL 7.58e-01 0.0525 0.17 0.051 cDC L2
ENSG00000134709 HOOK1 -864981 sc-eQTL 6.08e-01 0.114 0.222 0.052 gdT L2
ENSG00000162600 OMA1 403003 sc-eQTL 8.97e-01 -0.0291 0.225 0.052 gdT L2
ENSG00000162601 MYSM1 249728 sc-eQTL 2.53e-01 0.308 0.268 0.052 gdT L2
ENSG00000172456 FGGY -346833 sc-eQTL 9.85e-01 0.00451 0.242 0.052 gdT L2
ENSG00000173406 DAB1 403071 sc-eQTL 3.24e-01 -0.168 0.17 0.052 gdT L2
ENSG00000177606 JUN 165758 sc-eQTL 6.72e-01 0.0715 0.169 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162600 OMA1 403003 eQTL 1.23e-05 0.168 0.0382 0.0 0.0 0.0658
ENSG00000184292 TACSTD2 372032 eQTL 0.00142 0.14 0.0437 0.0 0.0 0.0658
ENSG00000234807 LINC01135 164677 eQTL 0.00508 -0.192 0.0683 0.00365 0.00194 0.0658
ENSG00000237352 LINC01358 16162 eQTL 0.054 0.136 0.0705 0.00103 0.0 0.0658

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162600 OMA1 403003 1.09e-06 6.78e-07 1.46e-07 4.29e-07 1.07e-07 2.08e-07 5.9e-07 9.69e-08 4.74e-07 2.28e-07 8.08e-07 4.21e-07 9.57e-07 1.48e-07 2.18e-07 2.69e-07 3.13e-07 4.11e-07 2.13e-07 1.53e-07 1.91e-07 3.95e-07 3.69e-07 1.36e-07 9.71e-07 2.39e-07 2.94e-07 2.24e-07 3.88e-07 6.47e-07 3.32e-07 8.14e-08 4.35e-08 1.16e-07 3.47e-07 7.86e-08 1e-07 7.62e-08 6.01e-08 5.77e-08 1.03e-07 7.53e-07 3.55e-08 5.64e-09 1.33e-07 1.61e-08 7.36e-08 1.28e-08 6.03e-08
ENSG00000184292 TACSTD2 372032 1.29e-06 8.33e-07 1.85e-07 4.25e-07 9.29e-08 2.77e-07 6.54e-07 1.37e-07 6.52e-07 2.8e-07 1.03e-06 5.15e-07 1.1e-06 1.59e-07 3.1e-07 3.35e-07 4.73e-07 4.31e-07 2.65e-07 1.86e-07 2.01e-07 5.11e-07 4.08e-07 2.17e-07 1.35e-06 2.74e-07 4.16e-07 2.59e-07 4.9e-07 7.92e-07 3.79e-07 7.41e-08 5.86e-08 1.57e-07 3.23e-07 1.28e-07 1.05e-07 8.04e-08 7.81e-08 2.74e-08 1.15e-07 9.76e-07 5.38e-08 1.23e-08 1.71e-07 1.42e-08 1.07e-07 3.05e-08 5.95e-08